Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.8e-190 669.1 334 100.0
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.9e-187 659.1 334 98.2
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.6e-186 656.0 334 97.6
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 4.6e-186 654.4 334 97.3
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 9.5e-184 646.7 334 96.7
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 5.8e-181 637.5 334 94.3
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 3.4e-157 558.5 334 80.5
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 3.9e-145 518.5 333 76.3
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 1.1e-139 500.4 331 75.2
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 7.1e-139 497.7 332 74.1
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 3.0e-137 492.3 331 73.7
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 6.7e-137 491.1 332 72.3
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 6.7e-137 491.1 332 73.8
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 8.7e-137 490.7 329 73.6
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 1.5e-136 490.0 332 72.6
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 1.9e-136 489.6 334 71.9
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 1.9e-136 489.6 332 72.0
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 5.8e-133 478.0 331 71.0
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 5.8e-133 478.0 333 68.2
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 1.3e-132 476.9 336 70.2
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.7e-132 476.5 328 71.6
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.7e-132 476.5 332 69.3
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.4e-131 473.4 336 70.2
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 5.5e-131 471.5 328 70.7
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 5.5e-131 471.5 332 67.5
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 7.2e-131 471.1 367 65.9
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 9.3e-131 470.7 331 69.8
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 1.3e-129 466.8 331 70.1
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.3e-129 466.8 364 65.7
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 1.8e-129 466.5 331 70.1
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 1.8e-129 466.5 331 70.1
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 2.3e-129 466.1 331 69.2
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 2.3e-129 466.1 336 68.2
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 2.3e-129 466.1 331 70.4
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 3.0e-129 465.7 332 67.5
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 3.9e-129 465.3 330 67.9
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 6.7e-129 464.5 331 69.8
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 1.1e-128 463.8 331 69.2
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 1.1e-128 463.8 331 69.5
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 1.5e-128 463.4 327 67.0
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 3.3e-128 462.2 348 66.1
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 5.7e-128 461.5 331 69.5
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 5.7e-128 461.5 334 66.5
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 7.4e-128 461.1 324 70.4
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 7.4e-128 461.1 332 67.2
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 1.3e-127 460.3 331 68.6
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 1.3e-127 460.3 336 67.9
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 1.3e-127 460.3 332 66.9
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 1.6e-127 459.9 336 67.0
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 4.8e-127 458.4 324 70.1
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 4.8e-127 458.4 331 68.6
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 4.8e-127 458.4 334 68.9
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 1.8e-126 456.4 331 68.9
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 2.4e-126 456.1 327 68.2
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 3.1e-126 455.7 331 69.2
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 4.1e-126 455.3 331 67.1
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 6.9e-126 454.5 331 68.0
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 9.0e-126 454.1 304 73.7
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 2.0e-125 453.0 325 68.0
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 5.9e-125 451.4 326 68.4
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 2.2e-124 449.5 325 67.7
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 1.9e-123 446.4 324 68.2
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.9e-123 446.4 332 65.7
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 4.2e-123 445.3 322 67.1
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 5.5e-123 444.9 367 61.3
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 9.4e-123 444.1 295 72.2
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 1.6e-122 443.4 331 64.0
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 4.6e-122 441.8 325 67.1
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 3.9e-121 438.7 332 63.3
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 5.1e-121 438.3 327 64.8
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 6.7e-121 438.0 328 66.8
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 1.1e-120 437.2 327 67.0
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 4.3e-120 435.3 332 63.9
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 9.7e-120 434.1 323 65.3
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 5.9e-117 424.9 332 63.9
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 3.8e-116 422.2 331 66.2
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 3.8e-116 422.2 334 63.8
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 5.0e-116 421.8 354 63.3
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 6.5e-116 421.4 318 67.0
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 2.5e-115 419.5 334 65.3
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 4.2e-115 418.7 384 57.6
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 5.5e-115 418.3 345 62.0
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 9.4e-115 417.5 345 62.0
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 2.7e-114 416.0 379 57.3
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 1.0e-113 414.1 247 82.6
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 3.3e-112 409.1 320 62.5
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 9.7e-112 407.5 332 61.1
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 9.7e-112 407.5 334 63.2
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 2.8e-111 406.0 236 82.6
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 1.7e-108 396.7 329 63.8
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 6.7e-105 384.8 292 66.8
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 2.6e-104 382.9 329 58.1
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 3.7e-103 379.0 332 59.3
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 4.8e-103 378.6 327 57.5
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 1.6e-101 373.6 263 67.7
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 1.6e-98 363.6 277 65.0
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 6.1e-98 361.7 256 69.1
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 1.0e-97 360.9 266 66.5
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 1.8e-97 360.1 326 56.7
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 2.2e-92 343.2 295 57.3
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 1.6e-90 337.0 328 53.7
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 1.8e-89 333.6 342 53.2
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 3.0e-89 332.8 325 54.5
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 1.1e-86 324.3 333 52.6
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 4.5e-85 318.9 186 80.1
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 1.0e-76 291.2 195 73.3
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 9.5e-75 284.6 212 65.1
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 1.8e-73 280.4 212 63.2
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 3.4e-72 276.2 334 45.2
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 1.3e-71 274.2 332 44.9
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 3.7e-71 272.7 330 44.5
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 1.0e-68 264.6 323 45.2
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 1.5e-64 250.8 322 48.4
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 6.4e-63 245.4 166 68.1
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 6.8e-57 225.3 170 67.1
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 1.8e-49 200.7 165 61.8
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 3.1e-49 199.9 152 61.2
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 4.0e-49 199.5 124 72.6
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 8.1e-42 175.3 203 53.7
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 9.0e-41 171.8 360 32.8
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 3.4e-40 169.9 349 31.8
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 5.8e-40 169.1 195 43.6
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 4.9e-39 166.0 143 60.1
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 8.7e-36 155.2 307 34.9
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 7.1e-30 135.6 126 58.7
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 3.5e-29 133.3 144 52.8
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 1.6e-26 124.4 354 28.8
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 5.7e-19 99.4 245 29.4
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 4.8e-18 96.3 76 59.2
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 1.5e-16 91.3 70 67.1
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 2.0e-16 90.9 59 72.9
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.9e-14 84.3 66 57.6
Cfa001138 Carpinus fangiana HOM05D000398 ORTHO05D000551 2.7e-13 80.5 69 59.4
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 2.3e-12 77.4 72 52.8
SHI32710 Sapria himalayana HOM05D005903 ORTHO05D007293 7.4e-11 72.4 92 51.1
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 2.4e-09 67.4 66 48.5


User provided reference genes

Program Settings