Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2964 Fragaria x ananassa HOM05D002924 ORTHO05D003122 4.5e-68 261.2 135 100.0
FAN21G3281 Fragaria x ananassa HOM05D002924 ORTHO05D003122 2.9e-62 241.9 135 93.3
FvH4_3g05360 Fragaria vesca HOM05D002924 ORTHO05D003122 1.3e-59 233.0 131 94.7
RcHm_v2.0_Chr5g0014391 Rosa chinensis HOM05D002924 ORTHO05D003122 1.6e-41 172.9 135 71.9
FAN03G2400 Fragaria x ananassa HOM05D000168 ORTHO05D003122 8.4e-30 134.0 84 83.3
FAN25G0675 Fragaria x ananassa HOM05D000168 ORTHO05D003122 8.4e-30 134.0 84 83.3
FAN11G3789 Fragaria x ananassa HOM05D000168 ORTHO05D003122 2.1e-28 129.4 74 91.9
MD10G1260700 Malus domestica HOM05D002924 ORTHO05D003122 1.9e-18 96.3 134 45.5
COL.COLO4_31051 Corchorus olitorius HOM05D002924 ORTHO05D003122 2.5e-18 95.9 135 45.2
MD05G1282000 Malus domestica HOM05D002924 ORTHO05D003122 7.4e-18 94.4 125 49.6
MD05G1282100 Malus domestica HOM05D002924 ORTHO05D003122 9.6e-18 94.0 134 47.0
Duzib235G1474 Durio zibethinus HOM05D002924 ORTHO05D003122 3.6e-17 92.0 135 45.2
Gohir.D09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 8.1e-17 90.9 141 48.2
Gorai.006G092400 Gossypium raimondii HOM05D002924 ORTHO05D003122 8.1e-17 90.9 141 48.2
Duzib160G0328 Durio zibethinus HOM05D002924 ORTHO05D003122 1.4e-16 90.1 134 47.8
Manes.15G122900 Manihot esculenta HOM05D002924 ORTHO05D003122 2.4e-16 89.4 134 44.0
Thecc.06G148600 Theobroma cacao HOM05D002924 ORTHO05D003122 2.4e-16 89.4 135 45.9
Gohir.A09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 5.3e-16 88.2 136 47.8
Glyma.08G096500 Glycine max HOM05D002924 ORTHO05D003122 1.2e-15 87.0 144 43.1
EL10Ac8g19657 Beta vulgaris HOM05D002924 ORTHO05D003122 2.0e-15 86.3 130 43.1
FvH4_3g05370 Fragaria vesca HOM05D002924 ORTHO05D003122 2.0e-15 86.3 142 48.6
Prupe.4G082500 Prunus persica HOM05D002924 ORTHO05D003122 2.0e-15 86.3 134 47.0
Gohir.D10G042800 Gossypium hirsutum HOM05D002924 ORTHO05D003122 2.6e-15 85.9 136 43.4
Gorai.011G045300 Gossypium raimondii HOM05D002924 ORTHO05D003122 3.4e-15 85.5 136 43.4
CiPaw.10G090800 Carya illinoinensis HOM05D002924 ORTHO05D003122 4.5e-15 85.1 148 43.9
ClCG01G024700 Citrullus lanatus HOM05D002924 ORTHO05D003122 5.8e-15 84.7 99 51.5
Gohir.A10G041900 Gossypium hirsutum HOM05D002924 ORTHO05D003122 5.8e-15 84.7 135 44.4
CsaV3_6G051810 Cucumis sativus L. HOM05D002924 ORTHO05D003122 1.3e-14 83.6 105 48.6
GSVIVG01007188001 Vitis vinifera HOM05D002924 ORTHO05D003122 1.3e-14 83.6 108 50.9
FAN25G1226 Fragaria x ananassa HOM05D002924 ORTHO05D003122 1.7e-14 83.2 143 46.2
MELO3C007125.2 Cucumis melo HOM05D002924 ORTHO05D003122 2.2e-14 82.8 99 51.5
Lsat_1_v5_gn_7_28101 Lactuca sativa HOM05D002924 ORTHO05D003122 2.2e-14 82.8 142 44.4
FAN16G0603 Fragaria x ananassa HOM05D002924 ORTHO05D003122 3.8e-14 82.0 143 46.9
Sed0024828 Sechium edule HOM05D002924 ORTHO05D003122 3.8e-14 82.0 137 43.8
FAN11G1040 Fragaria x ananassa HOM05D002924 ORTHO05D003122 4.9e-14 81.6 143 48.3
Sabra11G0066500 Salix brachista HOM05D002924 ORTHO05D003122 4.9e-14 81.6 144 43.8
Ciclev10017198m.g Citrus clementina HOM05D002924 ORTHO05D003122 6.4e-14 81.3 143 42.7
Cc00_g01970 Coffea canephora HOM05D002924 ORTHO05D003122 6.4e-14 81.3 134 44.0
Gohir.D05G150200 Gossypium hirsutum HOM05D002924 ORTHO05D003122 8.4e-14 80.9 135 42.2
Gohir.A05G147700 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.1e-13 80.5 135 44.4
Atru.chr10.1192 Acer truncatum HOM05D002924 ORTHO05D003122 1.4e-13 80.1 136 42.6
Eucgr.E02416 Eucalyptus grandis HOM05D002924 ORTHO05D003122 1.4e-13 80.1 101 51.5
FAN21G1101 Fragaria x ananassa HOM05D002924 ORTHO05D003122 1.4e-13 80.1 143 46.9
Nn4g26591 Nelumbo nucifera HOM05D002924 ORTHO05D003122 1.4e-13 80.1 143 38.5
Rhsim13G0114700 Rhododendron simsii HOM05D002924 ORTHO05D003122 1.9e-13 79.7 134 41.0
TWI53G0343 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 1.9e-13 79.7 138 42.8
Gorai.009G154300 Gossypium raimondii HOM05D002924 ORTHO05D003122 2.4e-13 79.3 135 42.2
QL05p059253 Quercus lobata HOM05D002924 ORTHO05D003122 2.4e-13 79.3 143 44.1
VMungo0540G0736 Vigna mungo HOM05D002924 ORTHO05D003122 2.4e-13 79.3 143 42.0
Glyma.05G141200 Glycine max HOM05D002924 ORTHO05D003122 3.2e-13 79.0 142 41.5
Manes.17G071600 Manihot esculenta HOM05D002924 ORTHO05D003122 3.2e-13 79.0 139 41.0
GSVIVG01021514001 Vitis vinifera HOM05D002924 ORTHO05D003122 3.2e-13 79.0 138 42.0
QL05p057398 Quercus lobata HOM05D002924 ORTHO05D003122 5.5e-13 78.2 143 42.7
Sed0007473 Sechium edule HOM05D002924 ORTHO05D003122 5.5e-13 78.2 136 46.3
CiPaw.09G122300 Carya illinoinensis HOM05D002924 ORTHO05D003122 9.3e-13 77.4 149 40.9
Potri.011G083900 Populus trichocarpa HOM05D002924 ORTHO05D003122 9.3e-13 77.4 139 42.4
vmacro03333 Vaccinium macrocarpon HOM05D002924 ORTHO05D003122 9.3e-13 77.4 140 40.0
DCAR_007884 Daucus carota HOM05D002924 ORTHO05D003122 1.6e-12 76.6 140 40.7
GSVIVG01021516001 Vitis vinifera HOM05D002924 ORTHO05D003122 2.1e-12 76.3 138 42.8
Dinv32237 Davidia involucrata HOM05D002924 ORTHO05D003122 2.7e-12 75.9 142 43.0
Lalb_Chr18g0055361 Lupinus albus HOM05D002924 ORTHO05D003122 3.5e-12 75.5 143 44.8
MBI02_g15229_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 3.5e-12 75.5 134 41.8
CANSAT35G0631 Cannabis sativa HOM05D002924 ORTHO05D003122 4.6e-12 75.1 157 37.6
Dinv05213 Davidia involucrata HOM05D002924 ORTHO05D003122 6.0e-12 74.7 143 43.4
HanXRQChr15g0482111 Helianthus annuus HOM05D002924 ORTHO05D003122 6.0e-12 74.7 141 42.6
Peaxi162Scf00394g00120 Petunia axillaris HOM05D002924 ORTHO05D003122 6.0e-12 74.7 136 41.9
Psat1g189800 Pisum sativum HOM05D002924 ORTHO05D003122 6.0e-12 74.7 135 42.2
CSS0028188 Camellia sinensis var. sinensis HOM05D002924 ORTHO05D003122 7.9e-12 74.3 146 41.8
Actinidia39583 Actinidia chinensis HOM05D002924 ORTHO05D003122 1.0e-11 73.9 139 40.3
Eucgr.D00289 Eucalyptus grandis HOM05D002924 ORTHO05D003122 1.3e-11 73.6 144 40.3
Glyma.15G093100 Glycine max HOM05D002924 ORTHO05D003122 1.3e-11 73.6 145 39.3
TWI09G0754 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 1.3e-11 73.6 130 42.3
MBI02_g15230_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 1.8e-11 73.2 130 40.0
MSTRG.16253 Avicennia marina HOM05D002924 ORTHO05D003122 2.3e-11 72.8 138 43.5
ECA236G5022 Erigeron canadensis HOM05D002924 ORTHO05D003122 2.3e-11 72.8 147 41.5
Nitab4.5_0001531g0020 Nicotiana tabacum HOM05D002924 ORTHO05D003122 3.0e-11 72.4 137 40.9
AL1G44040 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 3.9e-11 72.0 139 39.6
Peaxi162Scf00317g00117 Petunia axillaris HOM05D002924 ORTHO05D003122 3.9e-11 72.0 142 40.8
PGSC0003DMG400008781 Solanum tuberosum HOM05D002924 ORTHO05D003122 3.9e-11 72.0 135 43.0
Actinidia07706 Actinidia chinensis HOM05D002924 ORTHO05D003122 5.1e-11 71.6 134 40.3
Cpa.g.sc17.12 Carica papaya HOM05D002924 ORTHO05D003122 5.1e-11 71.6 134 41.8
Migut.H01355 Erythranthe guttata HOM05D002924 ORTHO05D003122 5.1e-11 71.6 133 41.4
Glyma.13G219100 Glycine max HOM05D002924 ORTHO05D003122 5.1e-11 71.6 152 37.5
RcHm_v2.0_Chr5g0014381 Rosa chinensis HOM05D002924 ORTHO05D003122 5.1e-11 71.6 142 42.3
SalBow8G3543 Salvia bowleyana HOM05D002924 ORTHO05D003122 5.1e-11 71.6 134 41.8
Peaxi162Scf00317g00121 Petunia axillaris HOM05D002924 ORTHO05D003122 6.7e-11 71.2 139 39.6
MSTRG.7496 Avicennia marina HOM05D002924 ORTHO05D003122 1.1e-10 70.5 129 42.6
DCAR_003905 Daucus carota HOM05D002924 ORTHO05D003122 1.1e-10 70.5 114 39.5
PSO675G3356 Papaver somniferum HOM05D002924 ORTHO05D003122 1.5e-10 70.1 136 39.7
Psat7g082920 Pisum sativum HOM05D002924 ORTHO05D003122 1.5e-10 70.1 129 40.3
Sc05g0006100 Simmondsia chinensis HOM05D002924 ORTHO05D003122 1.5e-10 70.1 135 38.5
Lj6g0009882 Lotus japonicus HOM05D002924 ORTHO05D003122 1.9e-10 69.7 143 37.8
MSTRG.14778 Avicennia marina HOM05D002924 ORTHO05D003122 2.5e-10 69.3 138 39.9
TAR624G0146 Trochodendron aralioides HOM05D002924 ORTHO05D003122 2.5e-10 69.3 99 43.4
Lalb_Chr15g0086781 Lupinus albus HOM05D002924 ORTHO05D003122 3.3e-10 68.9 148 38.5
MBI02_g15233_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.3e-10 68.9 126 40.5
Psat1g194920 Pisum sativum HOM05D002924 ORTHO05D003122 4.3e-10 68.6 99 46.5
MD09G1136800 Malus domestica HOM05D002924 ORTHO05D003122 5.6e-10 68.2 98 45.9
Potri.006G023301 Populus trichocarpa HOM05D002924 ORTHO05D003122 5.6e-10 68.2 135 41.5
GSVIVG01021519001 Vitis vinifera HOM05D002924 ORTHO05D003122 5.6e-10 68.2 131 38.2
Actinidia18522 Actinidia chinensis HOM05D002924 ORTHO05D003122 7.4e-10 67.8 141 35.5
arahy.Tifrunner.gnm1.ann1.IG3UT7 Arachis hypogaea HOM05D002924 ORTHO05D003122 7.4e-10 67.8 145 38.6
Nitab4.5_0001531g0050 Nicotiana tabacum HOM05D002924 ORTHO05D003122 7.4e-10 67.8 102 42.2
MD17G1127000 Malus domestica HOM05D002924 ORTHO05D003122 9.6e-10 67.4 104 40.4
Medtr2g019190 Medicago truncatula HOM05D002924 ORTHO05D003122 9.6e-10 67.4 142 40.8
Nitab4.5_0005246g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 9.6e-10 67.4 140 38.6
Psat1g195000 Pisum sativum HOM05D002924 ORTHO05D003122 1.3e-09 67.0 99 45.5
Sed0008794 Sechium edule HOM05D002924 ORTHO05D003122 1.3e-09 67.0 141 38.3
TPR.G36164 Trifolium pratense HOM05D002924 ORTHO05D003122 1.3e-09 67.0 138 39.9
AT1G30135 Arabidopsis thaliana HOM05D002924 ORTHO05D003122 1.6e-09 66.6 141 38.3
MBI18_g24474_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 1.6e-09 66.6 106 40.6
Manes.15G122700 Manihot esculenta HOM05D002924 ORTHO05D003122 1.6e-09 66.6 139 37.4
Nitab4.5_0009991g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 2.8e-09 65.9 142 38.0
Phvul.006G165800 Phaseolus vulgaris HOM05D002924 ORTHO05D003122 2.8e-09 65.9 146 38.4
TAR626G0560 Trochodendron aralioides HOM05D002924 ORTHO05D003122 2.8e-09 65.9 134 40.3
Aqoxy1G01686 Aquilegia oxysepala HOM05D002924 ORTHO05D003122 3.7e-09 65.5 137 39.4
Solyc08g036620.4 Solanum lycopersicum HOM05D002924 ORTHO05D003122 3.7e-09 65.5 134 39.6
Solyc08g036640.3 Solanum lycopersicum HOM05D002924 ORTHO05D003122 4.8e-09 65.1 134 38.8
Sopen08g011400 Solanum pennellii HOM05D002924 ORTHO05D003122 4.8e-09 65.1 134 38.8
arahy.Tifrunner.gnm1.ann1.P4WXL8 Arachis hypogaea HOM05D002924 ORTHO05D003122 6.2e-09 64.7 140 36.4
CARHR128700 Cardamine hirsuta HOM05D002924 ORTHO05D003122 6.2e-09 64.7 138 37.7
TAR626G1845 Trochodendron aralioides HOM05D002924 ORTHO05D003122 6.2e-09 64.7 133 38.3
TAR488G0001 Trochodendron aralioides HOM05D002924 ORTHO05D003122 8.2e-09 64.3 132 40.9
ClCG03G006750 Citrullus lanatus HOM05D002924 ORTHO05D003122 1.1e-08 63.9 149 36.9
HanXRQChr04g0114381 Helianthus annuus HOM05D002924 ORTHO05D003122 1.1e-08 63.9 143 36.4
Lj4g0026158 Lotus japonicus HOM05D002924 ORTHO05D003122 1.1e-08 63.9 141 34.8
PGSC0003DMG400001174 Solanum tuberosum HOM05D002924 ORTHO05D003122 1.1e-08 63.9 134 40.3
THA.LOC104812674 Tarenaya hassleriana HOM05D002924 ORTHO05D003122 1.1e-08 63.9 136 37.5
arahy.Tifrunner.gnm1.ann1.A76KD4 Arachis hypogaea HOM05D002924 ORTHO05D003122 1.8e-08 63.2 140 36.4
PGR031G1937 Punica granatum HOM05D002924 ORTHO05D003122 1.8e-08 63.2 152 32.2
unitig_26.g9758 Utricularia gibba HOM05D002924 ORTHO05D003122 3.1e-08 62.4 133 36.1
Prupe.3G188200 Prunus persica HOM05D002924 ORTHO05D003122 4.0e-08 62.0 101 39.6
Solyc08g036660.4 Solanum lycopersicum HOM05D002924 ORTHO05D003122 4.0e-08 62.0 145 34.5
PGSC0003DMG400008782 Solanum tuberosum HOM05D002924 ORTHO05D003122 4.0e-08 62.0 143 37.8
Sed0009253 Sechium edule HOM05D002924 ORTHO05D003122 5.3e-08 61.6 138 34.8
CDE12G0054 Ceratophyllum demersum HOM05D002924 ORTHO05D003122 6.9e-08 61.2 133 39.8
Solyc08g036505.2 Solanum lycopersicum HOM05D002924 ORTHO05D003122 9.0e-08 60.8 135 37.0
Medtr8g107300 Medicago truncatula HOM05D002924 ORTHO05D003122 1.2e-07 60.5 137 38.0
CAN.G50.1 Capsicum annuum HOM05D002924 ORTHO05D003122 1.5e-07 60.1 134 37.3
PGR004G2368 Punica granatum HOM05D002924 ORTHO05D003122 1.5e-07 60.1 130 36.2
Sopen08g011370 Solanum pennellii HOM05D002924 ORTHO05D003122 1.5e-07 60.1 134 38.8
THA.LOC104814306 Tarenaya hassleriana HOM05D002924 ORTHO05D003122 2.0e-07 59.7 148 33.8
AT2G34600 Arabidopsis thaliana HOM05D002924 ORTHO05D003122 2.6e-07 59.3 137 38.0
BolC4t27859H Brassica oleracea HOM05D002924 ORTHO05D003122 2.6e-07 59.3 135 37.0
Thhalv10009598m.g Eutrema salsugineum HOM05D002924 ORTHO05D003122 2.6e-07 59.3 135 35.6
Hund21543 Selenicereus undatus HOM05D002924 ORTHO05D003122 3.4e-07 58.9 140 34.3
PGSC0003DMG400001178 Solanum tuberosum HOM05D002924 ORTHO05D003122 3.4e-07 58.9 134 37.3
GSVIVG01021518001 Vitis vinifera HOM05D002924 ORTHO05D003122 3.4e-07 58.9 96 40.6
Sp4g16870 Schrenkiella parvula HOM05D002924 ORTHO05D003122 4.5e-07 58.5 135 35.6
Carub.0004s1628 Capsella rubella HOM05D002924 ORTHO05D003122 5.8e-07 58.2 142 38.7
TWI53G1424 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 5.8e-07 58.2 140 39.3
SGA_v2.0_scaffold223G42810 Striga asiatica HOM05D002924 ORTHO05D003122 7.6e-07 57.8 138 33.3
AL270U10010 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 1.3e-06 57.0 137 36.5
Cc02_g30950 Coffea canephora HOM05D002924 ORTHO05D003122 1.3e-06 57.0 134 35.8
Sopen08g011170 Solanum pennellii HOM05D002924 ORTHO05D003122 1.3e-06 57.0 135 34.1
TWI09G0054 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 1.3e-06 57.0 142 38.0
AL4G30580 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 1.7e-06 56.6 137 37.2
ClCG07G010850 Citrullus lanatus HOM05D002924 ORTHO05D003122 1.7e-06 56.6 137 35.8
Migut.M00900 Erythranthe guttata HOM05D002924 ORTHO05D003122 1.7e-06 56.6 145 36.6
Sp1g26000 Schrenkiella parvula HOM05D002924 ORTHO05D003122 2.2e-06 56.2 142 33.8
CDE01G0236 Ceratophyllum demersum HOM05D002924 ORTHO05D003122 2.9e-06 55.8 133 35.3
THA.LOC104820654 Tarenaya hassleriana HOM05D002924 ORTHO05D003122 2.9e-06 55.8 143 35.7
CARHR029250 Cardamine hirsuta HOM05D002924 ORTHO05D003122 4.9e-06 55.1 128 38.3
CsaV3_4G007460 Cucumis sativus L. HOM05D002924 ORTHO05D003122 4.9e-06 55.1 103 39.8
Oeu031277.1 Olea europaea HOM05D002924 ORTHO05D003122 8.4e-06 54.3 146 34.2
PGR083G2757 Punica granatum HOM05D002924 ORTHO05D003122 8.4e-06 54.3 101 37.6


User provided reference genes

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