Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 8.4e-70 266.9 137 100.0
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 4.2e-69 264.6 137 98.5
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 5.4e-69 264.2 137 98.5
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 5.4e-69 264.2 137 98.5
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 4.6e-68 261.2 137 98.5
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 3.7e-65 251.5 137 93.4
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 1.5e-47 193.0 137 68.6
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 4.6e-44 181.4 131 71.0
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 4.3e-42 174.9 137 64.2
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 8.2e-41 170.6 131 66.4
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 2.4e-40 169.1 135 62.2
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 2.2e-38 162.5 137 60.6
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 9.4e-37 157.1 137 59.9
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 2.1e-36 156.0 117 65.8
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 2.3e-35 152.5 129 59.7
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 5.1e-35 151.4 130 58.5
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 6.7e-35 151.0 130 59.2
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 8.8e-35 150.6 129 61.2
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 1.1e-34 150.2 136 54.4
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 2.6e-34 149.1 129 60.5
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 3.3e-34 148.7 138 59.4
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 7.4e-34 147.5 129 60.5
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 9.7e-34 147.1 137 56.2
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.7e-33 146.4 129 55.0
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 2.2e-33 146.0 132 56.1
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 2.2e-33 146.0 130 57.7
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.7e-33 145.2 138 56.5
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 3.7e-33 145.2 133 54.9
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 4.8e-33 144.8 130 57.7
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 1.8e-32 142.9 136 52.9
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 2.4e-32 142.5 117 61.5
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 3.1e-32 142.1 138 55.8
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 3.1e-32 142.1 131 56.5
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 1.2e-31 140.2 131 55.0
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 1.5e-31 139.8 135 57.8
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 2.0e-31 139.4 143 53.1
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 2.6e-31 139.0 130 54.6
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.5e-31 138.7 138 54.3
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 4.5e-31 138.3 129 57.4
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 7.7e-31 137.5 140 57.1
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.0e-30 137.1 138 55.8
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.0e-30 137.1 143 51.7
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.3e-30 136.7 139 51.8
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 2.9e-30 135.6 129 52.7
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 8.5e-30 134.0 138 55.1
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.4e-29 133.3 136 52.9
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 1.9e-29 132.9 130 55.4
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 2.5e-29 132.5 129 53.5
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 4.2e-29 131.7 131 60.3
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.5e-29 131.3 140 52.1
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 7.2e-29 131.0 136 52.2
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 7.2e-29 131.0 131 54.2
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 1.2e-28 130.2 121 53.7
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 2.7e-28 129.0 142 52.1
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 3.6e-28 128.6 128 56.2
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 3.6e-28 128.6 132 56.1
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 3.6e-28 128.6 143 54.5
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 8.0e-28 127.5 138 53.6
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 1.4e-27 126.7 130 52.3
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 2.3e-27 125.9 129 48.8
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 2.3e-27 125.9 140 45.7
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 3.0e-27 125.6 131 51.1
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 5.2e-27 124.8 137 48.9
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 6.7e-27 124.4 144 50.0
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 1.5e-26 123.2 143 51.0
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 2.0e-26 122.9 128 52.3
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 4.8e-25 118.2 150 49.3
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 6.3e-25 117.9 142 50.0
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 6.3e-25 117.9 121 52.1
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 1.1e-24 117.1 150 49.3
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 1.4e-24 116.7 130 53.1
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 1.4e-24 116.7 137 46.7
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 1.8e-24 116.3 135 46.7
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 3.1e-24 115.5 130 45.4
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 3.1e-24 115.5 129 48.1
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 4.1e-24 115.2 129 51.9
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 5.3e-24 114.8 104 55.8
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 5.3e-24 114.8 96 57.3
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.9e-22 109.0 131 49.6
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 2.9e-22 109.0 125 48.0
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 6.5e-22 107.8 135 43.0
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 1.1e-21 107.1 99 59.6
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 1.1e-21 107.1 112 56.2
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 1.5e-21 106.7 134 46.3
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 4.2e-21 105.1 132 46.2
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 1.2e-20 103.6 125 46.4
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 3.6e-20 102.1 117 47.9
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 8.0e-20 100.9 144 43.1
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 2.3e-19 99.4 138 43.5
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 4.0e-19 98.6 141 44.7
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 5.2e-19 98.2 134 43.3
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 6.8e-19 97.8 145 44.8
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 8.8e-19 97.4 111 52.3
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.2e-18 97.1 109 49.5
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 1.5e-18 96.7 115 49.6
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 2.0e-18 96.3 111 46.8
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 3.4e-18 95.5 111 47.7
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 3.4e-18 95.5 111 47.7
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 3.4e-18 95.5 109 48.6
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 5.7e-18 94.7 149 43.6
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 9.7e-18 94.0 130 43.1
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 2.2e-17 92.8 116 50.0
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 2.8e-17 92.4 116 46.6
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 2.8e-17 92.4 130 43.1
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 8.3e-17 90.9 114 49.1
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 1.1e-16 90.5 111 49.5
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 1.1e-16 90.5 111 49.5
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 1.4e-16 90.1 103 48.5
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 1.4e-16 90.1 126 42.9
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 1.8e-16 89.7 115 45.2
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 3.1e-16 89.0 111 49.5
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 3.1e-16 89.0 111 49.5
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 4.1e-16 88.6 111 46.8
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 4.1e-16 88.6 111 48.6
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 5.3e-16 88.2 124 45.2
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 1.2e-15 87.0 115 45.2
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 2.7e-15 85.9 111 45.9
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 2.7e-15 85.9 104 49.0
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 4.2e-13 78.6 129 41.1
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 1.2e-12 77.0 130 39.2
Oeu030182.1 Olea europaea HOM05D005728 ORTHO05D005733 2.1e-12 76.3 112 42.9
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 3.6e-12 75.5 148 40.5
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 3.6e-12 75.5 144 39.6
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 3.6e-12 75.5 125 40.8
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 1.0e-11 73.9 109 41.3
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 1.4e-11 73.6 123 36.6
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 2.3e-11 72.8 144 35.4
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 2.3e-11 72.8 144 36.1
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 3.0e-11 72.4 131 38.2
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 3.0e-11 72.4 130 34.6
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 5.2e-11 71.6 136 36.8
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 1.5e-10 70.1 142 40.8
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 1.5e-10 70.1 142 40.8
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 2.0e-10 69.7 148 37.8
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 2.0e-10 69.7 148 36.5
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.0e-10 69.7 136 33.8
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 5.7e-10 68.2 135 40.7
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 7.5e-10 67.8 135 40.0
BcaC04g19726 Brassica carinata HOM05D010860 ORTHO05D005733 2.8e-09 65.9 135 40.0
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 4.8e-09 65.1 73 43.8
CARHR274330 Cardamine hirsuta HOM05D010860 ORTHO05D005733 9.1e-08 60.8 150 32.0
Oeu001270.1 Olea europaea HOM05D005728 ORTHO05D005733 3.5e-07 58.9 128 34.4
unitig_21.g20302 Utricularia gibba HOM05D005728 ORTHO05D005733 8.6e-06 54.3 131 38.2


User provided reference genes

Program Settings