Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 0.0e+00 1426.4 811 100.0
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 0.0e+00 1311.2 832 88.5
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 0.0e+00 1251.9 817 88.7
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 0.0e+00 1204.1 744 90.6
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 0.0e+00 1144.0 744 87.4
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 1.2e-275 953.4 752 78.1
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 1.0e-191 674.5 798 58.1
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 9.1e-172 608.2 795 54.6
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 8.8e-167 591.7 797 53.3
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 1.3e-141 508.1 774 52.7
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 4.6e-139 499.6 779 53.0
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.1e-135 488.4 786 49.2
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 5.2e-135 486.1 781 49.4
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 6.8e-135 485.7 802 47.6
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 1.3e-133 481.5 825 47.9
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 1.7e-133 481.1 771 46.6
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.4e-124 450.7 776 46.1
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 7.1e-124 449.1 790 44.6
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 9.2e-124 448.7 794 44.3
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.6e-123 448.0 752 46.5
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 2.7e-123 447.2 803 44.3
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 4.6e-123 446.4 749 46.2
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 2.3e-122 444.1 791 45.9
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 1.1e-121 441.8 746 47.3
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 1.2e-120 438.3 748 47.1
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 6.2e-120 436.0 772 44.8
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 8.1e-120 435.6 790 48.0
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 6.8e-119 432.6 788 45.2
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 2.0e-118 431.0 786 49.2
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 2.6e-118 430.6 779 48.4
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 5.8e-118 429.5 730 45.9
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.7e-117 427.9 784 45.5
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 1.1e-116 425.2 769 47.9
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 5.4e-116 422.9 772 45.1
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 1.6e-115 421.4 790 41.8
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 8.7e-114 415.6 771 46.4
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 9.6e-113 412.1 765 48.0
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 3.6e-112 410.2 734 45.1
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 1.8e-111 407.9 821 42.6
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 2.4e-111 407.5 771 49.0
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 5.3e-111 406.4 886 42.3
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.5e-110 404.8 806 43.8
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 4.4e-110 403.3 752 43.4
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 2.9e-109 400.6 746 44.2
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 6.4e-109 399.4 797 44.0
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 1.2e-107 395.2 810 44.7
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.2e-107 395.2 803 44.3
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 3.0e-106 390.6 812 43.7
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 3.0e-106 390.6 780 47.1
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 3.9e-106 390.2 755 44.5
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 3.9e-106 390.2 711 44.9
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 4.0e-103 380.2 780 46.5
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 3.4e-102 377.1 753 44.8
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 4.5e-102 376.7 774 41.9
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 1.3e-101 375.2 738 42.3
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 6.4e-101 372.9 726 46.4
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 7.1e-100 369.4 739 44.9
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 6.0e-99 366.3 797 41.4
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.3e-98 365.2 796 42.5
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 1.9e-97 361.3 814 42.9
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 1.9e-97 361.3 774 46.6
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 9.6e-97 359.0 779 41.3
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 1.3e-96 358.6 797 43.8
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 1.1e-95 355.5 739 40.2
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 1.1e-95 355.5 748 41.6
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 1.1e-95 355.5 768 42.3
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 3.1e-95 354.0 760 42.6
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 4.0e-95 353.6 703 44.1
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 1.2e-94 352.1 629 51.0
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 1.7e-93 348.2 767 39.1
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 1.7e-93 348.2 773 40.5
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.7e-93 348.2 735 39.2
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.9e-93 347.4 696 43.4
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 6.5e-93 346.3 770 38.4
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 3.2e-92 344.0 767 40.5
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 2.7e-91 340.9 794 43.2
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 3.5e-91 340.5 748 42.8
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 7.9e-91 339.3 722 40.3
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.8e-90 338.2 694 43.8
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 2.3e-90 337.8 762 39.8
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 3.9e-90 337.0 770 41.0
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 6.7e-90 336.3 774 38.8
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 1.9e-89 334.7 793 45.0
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 2.5e-89 334.3 745 39.2
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 2.4e-87 327.8 741 43.3
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 6.9e-87 326.2 732 36.7
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 2.0e-86 324.7 743 39.7
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.3e-85 322.0 754 36.6
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.7e-85 321.6 789 39.0
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 5.5e-84 316.6 722 41.3
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 9.3e-84 315.8 661 44.9
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.2e-83 315.5 722 40.3
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 3.0e-82 310.8 690 44.2
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 3.9e-82 310.5 755 36.4
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 3.9e-82 310.5 828 39.0
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 1.1e-81 308.9 712 43.1
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 7.4e-81 306.2 815 41.6
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 9.7e-81 305.8 761 38.4
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 4.8e-80 303.5 711 38.0
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 6.9e-79 299.7 741 39.7
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 9.0e-79 299.3 842 38.1
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 1.7e-77 295.0 772 39.0
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 2.9e-77 294.3 784 37.8
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 3.2e-76 290.8 711 37.8
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 4.6e-75 287.0 707 37.5
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 6.1e-75 286.6 738 40.7
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 1.5e-73 282.0 745 39.3
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.1e-71 275.8 784 39.8
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 1.2e-70 272.3 769 36.7
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 1.2e-70 272.3 727 35.9
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 4.5e-70 270.4 803 35.0
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 2.2e-69 268.1 791 37.5
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 1.1e-68 265.8 727 35.5
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 4.2e-68 263.8 714 35.9
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 3.6e-67 260.8 776 38.7
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 2.3e-66 258.1 714 35.2
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 5.3e-63 246.9 696 33.0
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 6.5e-61 240.0 770 37.1
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 1.8e-58 231.9 732 34.3
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 1.7e-56 225.3 615 34.6
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 7.7e-54 216.5 778 31.5
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 2.2e-53 214.9 763 32.9
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 6.5e-53 213.4 766 31.7
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 6.5e-53 213.4 761 32.3
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 6.5e-53 213.4 761 32.3
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 2.1e-51 208.4 899 31.6
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 6.1e-51 206.8 880 31.4
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.3e-50 204.9 739 31.7
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 2.0e-49 201.8 865 32.0
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.8e-48 197.2 742 31.5
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 6.3e-48 196.8 797 33.5
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.1e-47 194.5 742 31.1
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 7.0e-47 193.4 744 32.3
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 7.7e-46 189.9 472 42.4
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 1.0e-45 189.5 692 32.7
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.7e-45 188.7 775 31.1
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 2.7e-43 181.4 660 32.1
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 3.6e-43 181.0 659 32.6
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 3.6e-43 181.0 689 32.9
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 1.8e-42 178.7 677 32.5
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 2.0e-41 175.3 813 31.7
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 2.0e-41 175.3 703 33.6
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 2.2e-40 171.8 633 35.9
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 1.6e-38 165.6 354 39.8
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 7.7e-38 163.3 587 32.4
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.0e-37 162.9 699 31.0
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 1.3e-37 162.5 453 37.1
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.1e-36 159.5 329 42.9
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 4.2e-36 157.5 205 49.3
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.6e-35 155.6 352 35.5
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 2.8e-35 154.8 226 50.4
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 5.2e-34 150.6 157 56.1
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 1.5e-33 149.1 227 43.6
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 1.3e-32 146.0 725 29.8
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 1.7e-32 145.6 264 42.0
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.3e-29 136.0 512 36.7
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 2.9e-29 134.8 134 58.2
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 3.9e-29 134.4 193 45.6
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 2.1e-27 128.6 171 46.2
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 4.0e-26 124.4 171 50.9
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 3.3e-20 104.8 694 26.8
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 3.3e-20 104.8 123 61.0
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 4.7e-19 100.9 138 55.1
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.4e-17 94.7 152 40.8
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 4.4e-17 94.4 107 50.5
FAN21G3133 Fragaria x ananassa HOM05D012862 ORTHO05D014226 8.3e-16 90.1 71 69.0
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 2.3e-13 82.0 48 81.2
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.5e-12 78.6 264 28.8
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 4.7e-11 74.3 367 25.6
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 3.7e-08 64.7 77 59.7
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 6.4e-08 63.9 316 27.8
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 4.1e-07 61.2 321 27.7
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 2.1e-06 58.9 322 27.6
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 6.0e-06 57.4 85 48.2
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 6.0e-06 57.4 85 48.2


User provided reference genes

Program Settings