Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2799 Fragaria x ananassa HOM05D007274 ORTHO05D009194 2.4e-125 452.2 231 100.0
FAN21G0952 Fragaria x ananassa HOM05D007274 ORTHO05D009194 6.0e-36 155.2 184 53.3
FAN11G1565 Fragaria x ananassa HOM05D007274 ORTHO05D009194 1.5e-34 150.6 78 96.2
FvH4_3g30550 Fragaria vesca HOM05D007274 ORTHO05D009194 1.2e-31 141.0 73 95.9
RcHm_v2.0_Chr5g0056551 Rosa chinensis HOM05D007274 ORTHO05D009194 9.9e-31 137.9 69 97.1
Aa31LG1G12850 Aethionema arabicum HOM05D007274 ORTHO05D009194 1.6e-28 130.6 82 78.0
THA.LOC109116051 Tarenaya hassleriana HOM05D007274 ORTHO05D009194 1.0e-27 127.9 69 89.9
BcaB05g22677 Brassica carinata HOM05D007274 ORTHO05D009194 1.3e-27 127.5 69 89.9
BcaB08g36400 Brassica carinata HOM05D007274 ORTHO05D009194 1.3e-27 127.5 69 89.9
BcaC04g19606 Brassica carinata HOM05D007274 ORTHO05D009194 1.3e-27 127.5 69 89.9
C09p53770 Brassica napus HOM05D007274 ORTHO05D009194 1.3e-27 127.5 69 89.9
BolC9t58252H Brassica oleracea HOM05D007274 ORTHO05D009194 1.3e-27 127.5 69 89.9
CARHR190660 Cardamine hirsuta HOM05D007274 ORTHO05D009194 1.3e-27 127.5 69 89.9
Thhalv10015213m.g Eutrema salsugineum HOM05D007274 ORTHO05D009194 1.3e-27 127.5 69 89.9
Sp6g22530 Schrenkiella parvula HOM05D007274 ORTHO05D009194 1.3e-27 127.5 69 89.9
MD03G1128500 Malus domestica HOM05D007274 ORTHO05D009194 3.0e-27 126.3 78 79.5
AT5G22875 Arabidopsis thaliana HOM05D007274 ORTHO05D009194 3.9e-27 125.9 69 88.4
AL6G34010 Arabidopsis lyrata HOM05D007274 ORTHO05D009194 5.1e-27 125.6 69 88.4
A10p18160 Brassica napus HOM05D007274 ORTHO05D009194 8.7e-27 124.8 69 88.4
BraA10t43891Z Brassica rapa HOM05D007274 ORTHO05D009194 8.7e-27 124.8 69 88.4
CANSAT64G0704 Cannabis sativa HOM05D007274 ORTHO05D009194 8.7e-27 124.8 69 87.0
Carub.0006s2065 Capsella rubella HOM05D007274 ORTHO05D009194 1.1e-26 124.4 69 88.4
Haze_23527 Corylus avellana HOM05D007274 ORTHO05D009194 4.3e-26 122.5 69 84.1
Prupe.6G113700 Prunus persica HOM05D007274 ORTHO05D009194 4.3e-26 122.5 69 85.5
Sed0003405 Sechium edule HOM05D007274 ORTHO05D009194 7.4e-26 121.7 77 75.3
Cfa010139 Carpinus fangiana HOM05D007274 ORTHO05D009194 9.6e-26 121.3 69 84.1
Psat7g223680 Pisum sativum HOM05D007274 ORTHO05D009194 9.6e-26 121.3 69 84.1
Lalb_Chr19g0136881 Lupinus albus HOM05D007274 ORTHO05D009194 2.1e-25 120.2 69 81.2
TPR.G36741 Trifolium pratense HOM05D007274 ORTHO05D009194 2.1e-25 120.2 69 82.6
Ciclev10029644m.g Citrus clementina HOM05D007274 ORTHO05D009194 4.8e-25 119.0 70 84.3
Ca_10763_v3 Cicer arietinum L. HOM05D007274 ORTHO05D009194 1.1e-24 117.9 69 81.2
Medtr4g057190 Medicago truncatula HOM05D007274 ORTHO05D009194 1.1e-24 117.9 69 79.7
QL01p014890 Quercus lobata HOM05D007274 ORTHO05D009194 1.1e-24 117.9 68 80.9
Thecc.09G297800 Theobroma cacao HOM05D007274 ORTHO05D009194 1.4e-24 117.5 69 81.2
Lj3g0015703 Lotus japonicus HOM05D007274 ORTHO05D009194 1.8e-24 117.1 69 81.2
ClCG02G021670 Citrullus lanatus HOM05D007274 ORTHO05D009194 2.4e-24 116.7 69 81.2
Cpa.g.sc47.5 Carica papaya HOM05D007274 ORTHO05D009194 4.0e-24 115.9 69 81.2
CiPaw.14G106900 Carya illinoinensis HOM05D007274 ORTHO05D009194 6.9e-24 115.2 69 78.3
Oeu007727.1 Olea europaea HOM05D007274 ORTHO05D009194 1.2e-23 114.4 71 80.3
AUR62024013 Chenopodium quinoa HOM05D007274 ORTHO05D009194 2.6e-23 113.2 72 77.8
vmacro03251 Vaccinium macrocarpon HOM05D007274 ORTHO05D009194 2.6e-23 113.2 72 77.8
Solyc11g066450.2 Solanum lycopersicum HOM05D007274 ORTHO05D009194 3.4e-23 112.8 72 76.4
Sopen11g026200 Solanum pennellii HOM05D007274 ORTHO05D009194 3.4e-23 112.8 72 76.4
PGSC0003DMG401000458 Solanum tuberosum HOM05D007274 ORTHO05D009194 3.4e-23 112.8 72 76.4
arahy.Tifrunner.gnm1.ann1.BZT54Z Arachis hypogaea HOM05D007274 ORTHO05D009194 4.5e-23 112.5 69 79.7
arahy.Tifrunner.gnm1.ann1.F7FWRZ Arachis hypogaea HOM05D007274 ORTHO05D009194 4.5e-23 112.5 69 79.7
Rhsim13G0101500 Rhododendron simsii HOM05D007274 ORTHO05D009194 4.5e-23 112.5 72 77.8
Hund00829 Selenicereus undatus HOM05D007274 ORTHO05D009194 5.8e-23 112.1 72 77.8
Peaxi162Scf00983g00003 Petunia axillaris HOM05D007274 ORTHO05D009194 7.6e-23 111.7 72 76.4
AUR62041328 Chenopodium quinoa HOM05D007274 ORTHO05D009194 1.7e-22 110.5 70 78.6
Sc06g0006140 Simmondsia chinensis HOM05D007274 ORTHO05D009194 1.7e-22 110.5 71 74.6
Lsat_1_v5_gn_1_64881 Lactuca sativa HOM05D007274 ORTHO05D009194 2.2e-22 110.2 74 74.3
Manes.04G012400 Manihot esculenta HOM05D007274 ORTHO05D009194 2.2e-22 110.2 70 77.1
Rhsim13G0101200 Rhododendron simsii HOM05D007274 ORTHO05D009194 2.2e-22 110.2 72 76.4
Actinidia07190 Actinidia chinensis HOM05D007274 ORTHO05D009194 2.9e-22 109.8 72 75.0
Ah.01g004810 Amaranthus hybridus HOM05D007274 ORTHO05D009194 3.8e-22 109.4 71 77.5
CSS0018211 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 3.8e-22 109.4 70 77.1
Haze_23532 Corylus avellana HOM05D007274 ORTHO05D009194 3.8e-22 109.4 69 75.4
ECA248G0925 Erigeron canadensis HOM05D007274 ORTHO05D009194 4.9e-22 109.0 71 76.1
Glyma.12G082200 Glycine max HOM05D007274 ORTHO05D009194 4.9e-22 109.0 62 83.9
Atru.chr3.3502 Acer truncatum HOM05D007274 ORTHO05D009194 6.4e-22 108.6 93 67.7
PGR102G1958 Punica granatum HOM05D007274 ORTHO05D009194 6.4e-22 108.6 70 72.9
DCAR_022681 Daucus carota HOM05D007274 ORTHO05D009194 8.4e-22 108.2 71 76.1
Duzib150G1296 Durio zibethinus HOM05D007274 ORTHO05D009194 8.4e-22 108.2 69 75.4
Duzib150G1526 Durio zibethinus HOM05D007274 ORTHO05D009194 8.4e-22 108.2 69 75.4
Nitab4.5_0009628g0020 Nicotiana tabacum HOM05D007274 ORTHO05D009194 8.4e-22 108.2 72 73.6
Sabra04G0148000 Salix brachista HOM05D007274 ORTHO05D009194 1.1e-21 107.8 70 75.7
Cc01_g10210 Coffea canephora HOM05D007274 ORTHO05D009194 1.4e-21 107.5 72 72.2
SGA_v2.0_scaffold277G46704 Striga asiatica HOM05D007274 ORTHO05D009194 1.4e-21 107.5 90 63.3
CAN.G546.54 Capsicum annuum HOM05D007274 ORTHO05D009194 1.9e-21 107.1 72 73.6
Migut.D02299 Erythranthe guttata HOM05D007274 ORTHO05D009194 1.9e-21 107.1 71 77.5
Gohir.A09G064000 Gossypium hirsutum HOM05D007274 ORTHO05D009194 1.9e-21 107.1 69 75.4
Gohir.D09G062900 Gossypium hirsutum HOM05D007274 ORTHO05D009194 1.9e-21 107.1 69 75.4
Gorai.006G077700 Gossypium raimondii HOM05D007274 ORTHO05D009194 1.9e-21 107.1 69 75.4
Nitab4.5_0000173g0170 Nicotiana tabacum HOM05D007274 ORTHO05D009194 1.9e-21 107.1 72 72.2
PSO384G1249 Papaver somniferum HOM05D007274 ORTHO05D009194 1.9e-21 107.1 73 74.0
Phvul.005G069100 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 1.9e-21 107.1 62 82.3
Phvul.011G086800 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 1.9e-21 107.1 62 82.3
SalBow6G3121 Salvia bowleyana HOM05D007274 ORTHO05D009194 1.9e-21 107.1 71 76.1
Potri.004G217300 Populus trichocarpa HOM05D007274 ORTHO05D009194 2.5e-21 106.7 70 74.3
COL.COLO4_19207 Corchorus olitorius HOM05D007274 ORTHO05D009194 3.2e-21 106.3 69 73.9
Haze_08394 Corylus avellana HOM05D007274 ORTHO05D009194 3.2e-21 106.3 81 65.4
EL10Ac9g21016 Beta vulgaris HOM05D007274 ORTHO05D009194 4.2e-21 105.9 70 74.3
HanXRQChr11g0346021 Helianthus annuus HOM05D007274 ORTHO05D009194 5.5e-21 105.5 71 73.2
C02p11370 Brassica napus HOM05D007274 ORTHO05D009194 7.1e-21 105.1 64 84.4
CSS0039770 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 7.1e-21 105.1 72 72.2
unitig_899.g15364 Utricularia gibba HOM05D000376 ORTHO05D000237 9.3e-21 104.8 81 70.4
MBI04_g08417_MAGBIO Magnolia biondii HOM05D007274 ORTHO05D009194 1.2e-20 104.4 69 73.9
BNapus_Darmor_BZH_scaffold_38p00270 Brassica napus HOM05D007274 ORTHO05D009194 2.1e-20 103.6 64 82.8
Os04g0165500 Oryza sativa ssp. japonica HOM05D007274 ORTHO05D009194 3.5e-20 102.8 70 71.4
BraA02t05697Z Brassica rapa HOM05D007274 ORTHO05D009194 6.0e-20 102.1 64 82.8
Nn2g13873 Nelumbo nucifera HOM05D007274 ORTHO05D009194 1.0e-19 101.3 65 72.3
CSS0045495 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 1.8e-19 100.5 72 69.4
CSS0014818 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 2.3e-19 100.1 72 69.4
Glyma.11G192200 Glycine max HOM05D007274 ORTHO05D009194 3.9e-19 99.4 61 77.0
HPP92_002407 Vanilla planifolia HOM05D007274 ORTHO05D009194 3.9e-19 99.4 69 68.1
Aqoxy1G01060 Aquilegia oxysepala HOM05D007274 ORTHO05D009194 3.3e-18 96.3 65 69.2
Nn5g27554 Nelumbo nucifera HOM05D007274 ORTHO05D009194 2.1e-17 93.6 64 68.8
GSVIVG01031456001 Vitis vinifera HOM05D007274 ORTHO05D009194 6.2e-17 92.0 67 64.2
ATR0043G009 Amborella trichopoda HOM05D007274 ORTHO05D009194 1.8e-16 90.5 63 68.3
CDE04G2982 Ceratophyllum demersum HOM05D007274 ORTHO05D009194 9.0e-16 88.2 64 67.2
MD11G1149300 Malus domestica HOM05D007274 ORTHO05D009194 5.8e-15 85.5 50 86.0
SEGI_23633 Sequoiadendron giganteum HOM05D007274 ORTHO05D009194 5.8e-15 85.5 143 41.3
Mapoly0009s0144 Marchantia polymorpha HOM05D007274 ORTHO05D009194 1.7e-14 84.0 60 63.3
Pp3c6_6370 Physcomitrium patens HOM05D007274 ORTHO05D009194 1.2e-12 77.8 67 61.2
Lsat_1_v5_gn_1_64921 Lactuca sativa HOM05D007274 ORTHO05D009194 2.3e-11 73.6 64 62.5
SHI06197 Sapria himalayana HOM05D005377 ORTHO05D003034 1.8e-08 63.9 58 60.3
TAR369G0919 Trochodendron aralioides HOM05D007274 ORTHO05D009194 5.3e-08 62.4 42 69.0


User provided reference genes

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