Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2589 Fragaria x ananassa HOM05D007298 ORTHO05D009226 2.0e-200 702.2 354 100.0
FvH4_3g45980 Fragaria vesca HOM05D007298 ORTHO05D009226 1.1e-193 679.9 354 97.7
FAN21G1139 Fragaria x ananassa HOM05D007298 ORTHO05D009226 3.3e-187 658.3 338 98.2
FAN25G2175 Fragaria x ananassa HOM05D007298 ORTHO05D009226 3.7e-186 654.8 338 97.9
FAN11G2203 Fragaria x ananassa HOM05D007298 ORTHO05D009226 5.3e-185 651.0 338 97.6
RcHm_v2.0_Chr5g0084091 Rosa chinensis HOM05D007298 ORTHO05D009226 1.1e-156 557.0 371 81.7
MD11G1000700 Malus domestica HOM05D007298 ORTHO05D009226 6.3e-53 212.2 316 47.5
Cfa009528 Carpinus fangiana HOM05D007298 ORTHO05D009226 7.8e-51 205.3 344 45.9
Prupe.6G001000 Prunus persica HOM05D007298 ORTHO05D009226 6.6e-50 202.2 348 43.7
Thecc.03G118900 Theobroma cacao HOM05D007298 ORTHO05D009226 1.5e-49 201.1 319 44.8
CiPaw.13G179900 Carya illinoinensis HOM05D007298 ORTHO05D009226 7.3e-49 198.7 352 44.6
Gohir.A12G186800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 1.2e-48 198.0 315 44.1
Gohir.D12G189800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 2.1e-48 197.2 314 43.6
Hma1.2p1_1436F.1_g283160 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 8.0e-48 195.3 321 44.5
COL.COLO4_37432 Corchorus olitorius HOM05D007298 ORTHO05D009226 1.4e-47 194.5 292 44.9
Gorai.008G203600 Gossypium raimondii HOM05D007298 ORTHO05D009226 1.4e-47 194.5 314 43.0
TAR623G1587 Trochodendron aralioides HOM05D007298 ORTHO05D009226 1.4e-47 194.5 344 43.9
Duzib205G1649 Durio zibethinus HOM05D007298 ORTHO05D009226 5.8e-46 189.1 292 44.9
Lj4g0005920 Lotus japonicus HOM05D007298 ORTHO05D009226 1.3e-45 188.0 332 42.8
Cc11_g17470 Coffea canephora HOM05D007298 ORTHO05D009226 3.7e-45 186.4 346 39.6
Lalb_Chr16g0383911 Lupinus albus HOM05D007298 ORTHO05D009226 6.4e-45 185.7 318 42.1
Nn7g35796 Nelumbo nucifera HOM05D007298 ORTHO05D009226 1.1e-44 184.9 361 41.0
Glyma.07G199400 Glycine max HOM05D007298 ORTHO05D009226 9.2e-44 181.8 297 44.4
Glyma.13G177000 Glycine max HOM05D007298 ORTHO05D009226 9.2e-44 181.8 293 42.7
Haze_22918 Corylus avellana HOM05D007298 ORTHO05D009226 2.0e-43 180.6 329 44.1
CSS0015764 Camellia sinensis var. sinensis HOM05D007298 ORTHO05D009226 2.7e-43 180.3 314 41.7
Ciclev10017525m.g Citrus clementina HOM05D007298 ORTHO05D009226 1.3e-42 177.9 294 45.2
Sabra01G0000900 Salix brachista HOM05D007298 ORTHO05D009226 6.6e-42 175.6 325 41.2
VMungo0251G1522 Vigna mungo HOM05D007298 ORTHO05D009226 8.6e-42 175.3 320 41.2
MELO3C026268.2 Cucumis melo HOM05D007298 ORTHO05D009226 1.1e-41 174.9 277 45.5
Sed0017427 Sechium edule HOM05D007298 ORTHO05D009226 1.9e-41 174.1 324 42.0
MBI13_g02430_MAGBIO Magnolia biondii HOM05D007298 ORTHO05D009226 2.5e-41 173.7 325 42.8
ClCG06G017280 Citrullus lanatus HOM05D007298 ORTHO05D009226 4.3e-41 172.9 329 41.3
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 4.3e-41 172.9 289 41.5
AUR62008624 Chenopodium quinoa HOM05D007298 ORTHO05D009226 7.3e-41 172.2 289 43.9
CsaV3_1G001220 Cucumis sativus L. HOM05D007298 ORTHO05D009226 1.6e-40 171.0 288 43.8
PGR119G1464 Punica granatum HOM05D007298 ORTHO05D009226 1.6e-40 171.0 296 43.2
QL01p007822 Quercus lobata HOM05D007298 ORTHO05D009226 2.1e-40 170.6 274 45.3
Nn2g15906 Nelumbo nucifera HOM05D007298 ORTHO05D009226 8.0e-40 168.7 354 40.4
Potri.001G001000 Populus trichocarpa HOM05D007298 ORTHO05D009226 8.0e-40 168.7 325 39.1
vmacro16084 Vaccinium macrocarpon HOM05D007298 ORTHO05D009226 1.4e-39 167.9 320 40.3
Manes.15G111000 Manihot esculenta HOM05D007298 ORTHO05D009226 1.8e-39 167.5 317 40.4
arahy.Tifrunner.gnm1.ann1.IS7ZQD Arachis hypogaea HOM05D002349 ORTHO05D002464 2.3e-39 167.2 290 40.3
arahy.Tifrunner.gnm1.ann1.MB6W4F Arachis hypogaea HOM05D002349 ORTHO05D002464 2.3e-39 167.2 290 40.3
Carub.0007s1454 Capsella rubella HOM05D007298 ORTHO05D009226 2.3e-39 167.2 276 42.8
AT4G26415 Arabidopsis thaliana HOM05D007298 ORTHO05D009226 3.1e-39 166.8 297 41.8
Phvul.002G230700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 3.1e-39 166.8 316 42.1
Actinidia30606 Actinidia chinensis HOM05D007298 ORTHO05D009226 5.2e-39 166.0 287 40.8
Migut.K01030 Erythranthe guttata HOM05D007298 ORTHO05D009226 8.9e-39 165.2 314 39.5
AUR62033147 Chenopodium quinoa HOM05D007298 ORTHO05D009226 1.2e-38 164.9 282 43.3
Aqoxy2G04036 Aquilegia oxysepala HOM05D007298 ORTHO05D009226 1.5e-38 164.5 301 41.9
TPR.G16338 Trifolium pratense HOM05D007298 ORTHO05D009226 2.6e-38 163.7 294 41.2
Duzib084G1143 Durio zibethinus HOM05D007298 ORTHO05D009226 3.4e-38 163.3 263 43.7
Peaxi162Scf00128g01770 Petunia axillaris HOM05D007298 ORTHO05D009226 5.8e-38 162.5 345 37.7
TWI32G0891 Tripterygium wilfordii HOM05D007298 ORTHO05D009226 7.5e-38 162.2 277 43.0
Psat7g113280 Pisum sativum HOM05D007298 ORTHO05D009226 9.8e-38 161.8 298 40.3
Lalb_Chr05g0218531 Lupinus albus HOM05D007298 ORTHO05D009226 2.9e-37 160.2 250 45.2
Medtr4g088515 Medicago truncatula HOM05D000062 ORTHO05D000043 4.9e-37 159.5 326 39.9
Sc05g0003880 Simmondsia chinensis HOM05D007298 ORTHO05D009226 2.4e-36 157.1 300 39.7
Dinv31519 Davidia involucrata HOM05D007298 ORTHO05D009226 3.2e-36 156.8 295 41.7
CARHR233970 Cardamine hirsuta HOM05D007298 ORTHO05D009226 4.1e-36 156.4 283 41.3
Nitab4.5_0008442g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 4.1e-36 156.4 344 36.0
AL7G26540 Arabidopsis lyrata HOM05D007298 ORTHO05D009226 5.4e-36 156.0 259 42.1
DCAR_006996 Daucus carota HOM05D007298 ORTHO05D009226 9.2e-36 155.2 272 39.0
Ah.08g213460 Amaranthus hybridus HOM05D007298 ORTHO05D009226 1.2e-35 154.8 292 38.4
Ca_18576_v3 Cicer arietinum L. HOM05D007298 ORTHO05D009226 1.6e-35 154.5 272 40.4
Lsat_1_v5_gn_4_2201 Lactuca sativa HOM05D007298 ORTHO05D009226 1.6e-35 154.5 257 40.5
EL10Ac4g07728 Beta vulgaris HOM05D007298 ORTHO05D009226 2.7e-35 153.7 313 39.6
PGSC0003DMG400025413 Solanum tuberosum HOM05D007298 ORTHO05D009226 2.7e-35 153.7 334 36.8
THA.LOC104813474 Tarenaya hassleriana HOM05D007298 ORTHO05D009226 4.6e-35 152.9 287 40.8
Eucgr.J01725 Eucalyptus grandis HOM05D007298 ORTHO05D009226 6.0e-35 152.5 287 41.5
C07p54880 Brassica napus HOM05D007298 ORTHO05D009226 1.3e-34 151.4 282 40.8
BolC7t45976H Brassica oleracea HOM05D007298 ORTHO05D009226 1.3e-34 151.4 282 40.8
Sp7g24320 Schrenkiella parvula HOM05D007298 ORTHO05D009226 1.3e-34 151.4 285 41.8
A03p56680 Brassica napus HOM05D007298 ORTHO05D009226 3.9e-34 149.8 282 40.8
BraA03t14738Z Brassica rapa HOM05D007298 ORTHO05D009226 3.9e-34 149.8 282 40.8
Thhalv10026008m.g Eutrema salsugineum HOM05D007298 ORTHO05D009226 6.6e-34 149.1 260 41.9
Lalb_Chr09g0327771 Lupinus albus HOM05D007298 ORTHO05D009226 6.6e-34 149.1 299 39.1
Rhsim12G0097800 Rhododendron simsii HOM05D007298 ORTHO05D009226 8.6e-34 148.7 315 38.1
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 1.5e-33 147.9 275 41.1
BcaC06g32750 Brassica carinata HOM05D007298 ORTHO05D009226 3.3e-33 146.7 259 41.3
SGA_v2.0_scaffold9G04794 Striga asiatica HOM05D002076 ORTHO05D002087 5.6e-33 146.0 246 40.7
CANSAT11G1103 Cannabis sativa HOM05D007298 ORTHO05D009226 2.8e-32 143.7 254 43.3
HanXRQChr12g0385721 Helianthus annuus HOM05D007298 ORTHO05D009226 2.3e-31 140.6 248 40.3
Sopen05g018720 Solanum pennellii HOM05D007298 ORTHO05D009226 3.1e-31 140.2 324 36.7
Sed0020092 Sechium edule HOM05D007298 ORTHO05D009226 1.2e-30 138.3 253 42.3
BcaNung02423 Brassica carinata HOM05D007298 ORTHO05D009226 2.6e-30 137.1 283 38.5
DCAR_006994 Daucus carota HOM05D007298 ORTHO05D009226 3.4e-30 136.7 258 37.6
ATR0068G085 Amborella trichopoda HOM05D007298 ORTHO05D009226 1.7e-29 134.4 318 36.8
Actinidia09612 Actinidia chinensis HOM05D007298 ORTHO05D009226 4.1e-28 129.8 295 38.0
Solyc05g024020.1 Solanum lycopersicum HOM05D007298 ORTHO05D009226 4.1e-28 129.8 274 39.4
unitig_22.g6385 Utricularia gibba HOM05D007298 ORTHO05D009226 1.6e-27 127.9 264 36.0
SalBow2G0405 Salvia bowleyana HOM05D007298 ORTHO05D009226 3.0e-26 123.6 241 38.2
SalBow2G1404 Salvia bowleyana HOM05D007298 ORTHO05D009226 3.0e-26 123.6 241 38.2
Hma1.2p1_0459F.1_g157260 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 1.1e-25 121.7 290 36.6
Zm00001eb127960 Zea mays HOM05D007298 ORTHO05D009226 3.3e-25 120.2 249 39.4
Cpa.g.sc119.13 Carica papaya HOM05D007298 ORTHO05D009226 2.8e-24 117.1 319 33.2
Glyma.15G076400 Glycine max HOM05D007298 ORTHO05D009226 1.6e-16 91.3 133 46.6
Glyma.13G237100 Glycine max HOM05D007298 ORTHO05D009226 6.9e-15 85.9 140 43.6
CDE07G0295 Ceratophyllum demersum HOM05D000114 ORTHO05D000038 4.9e-13 79.7 178 37.6
Phvul.006G183700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 1.9e-12 77.8 148 39.9
Nitab4.5_0000340g0060 Nicotiana tabacum HOM05D007298 ORTHO05D009226 6.0e-11 72.8 95 43.2


User provided reference genes

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