Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 6.9e-113 410.6 200 100.0
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.0e-112 409.1 200 99.5
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 4.5e-112 407.9 200 99.0
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.7e-111 406.0 200 98.5
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.1e-110 403.3 200 97.5
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 1.5e-107 392.9 200 94.5
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 2.3e-100 369.0 197 87.8
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 7.4e-99 364.0 199 85.9
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 2.1e-98 362.5 199 85.4
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 3.7e-98 361.7 199 85.4
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 8.2e-98 360.5 196 84.7
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 1.8e-97 359.4 196 86.7
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 3.1e-97 358.6 197 85.3
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 1.2e-96 356.7 198 83.8
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 2.0e-96 355.9 198 84.3
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 3.4e-96 355.1 196 84.7
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 3.4e-96 355.1 196 84.7
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 5.8e-96 354.4 196 84.7
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 5.8e-96 354.4 195 86.2
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 2.2e-95 352.4 197 83.8
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 2.9e-95 352.1 196 84.2
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 3.8e-95 351.7 197 83.8
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 4.9e-95 351.3 197 83.8
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 4.9e-95 351.3 196 84.2
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 6.5e-95 350.9 197 83.8
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 6.5e-95 350.9 198 81.3
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 1.4e-94 349.7 199 82.9
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 1.9e-94 349.4 196 84.2
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 1.9e-94 349.4 198 81.8
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 2.5e-94 349.0 196 83.2
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 2.5e-94 349.0 195 83.6
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 2.5e-94 349.0 196 84.2
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 2.5e-94 349.0 221 76.5
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 3.2e-94 348.6 197 82.2
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 3.2e-94 348.6 196 83.2
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 9.3e-94 347.1 197 83.8
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 1.2e-93 346.7 197 81.7
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.2e-93 346.7 196 84.2
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 1.6e-93 346.3 196 83.7
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 2.7e-93 345.5 199 81.4
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 4.6e-93 344.7 196 82.1
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 7.9e-93 344.0 196 83.7
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.3e-92 343.2 196 82.1
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.3e-92 343.2 195 82.1
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.3e-92 343.2 196 82.7
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 2.3e-92 342.4 199 79.9
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 2.3e-92 342.4 198 83.3
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 3.0e-92 342.0 196 83.7
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 3.9e-92 341.7 199 78.9
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 6.7e-92 340.9 199 80.9
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 8.7e-92 340.5 197 81.2
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 8.7e-92 340.5 196 81.1
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 1.1e-91 340.1 200 81.0
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 1.5e-91 339.7 196 80.6
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 3.3e-91 338.6 196 80.6
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 3.3e-91 338.6 200 80.0
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 3.3e-91 338.6 197 82.2
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 3.3e-91 338.6 199 77.9
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 3.3e-91 338.6 196 83.2
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 3.3e-91 338.6 196 83.2
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 5.7e-91 337.8 192 81.8
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 3.7e-90 335.1 214 75.2
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 3.7e-90 335.1 199 77.4
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 6.3e-90 334.3 196 78.1
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.4e-89 333.2 196 78.6
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 1.8e-89 332.8 199 76.4
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.8e-89 332.8 196 78.6
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 3.1e-89 332.0 199 75.9
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 3.1e-89 332.0 199 75.4
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 3.1e-89 332.0 196 79.1
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 3.1e-89 332.0 196 77.0
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 4.1e-89 331.6 197 77.7
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 5.3e-89 331.3 199 74.9
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 5.3e-89 331.3 196 78.1
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 9.0e-89 330.5 198 76.8
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 2.0e-88 329.3 199 75.9
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 3.4e-88 328.6 196 76.5
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 4.5e-88 328.2 196 78.1
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 4.5e-88 328.2 199 75.9
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 1.3e-87 326.6 199 74.9
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 1.3e-87 326.6 215 72.6
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 2.2e-87 325.9 225 70.7
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 3.8e-87 325.1 185 81.6
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 5.0e-87 324.7 200 75.0
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 5.0e-87 324.7 200 75.0
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 5.0e-87 324.7 200 75.0
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 5.0e-87 324.7 200 75.0
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 5.0e-87 324.7 200 75.0
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 5.0e-87 324.7 200 75.0
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 8.5e-87 323.9 198 74.2
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 1.1e-86 323.6 195 75.9
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 1.9e-86 322.8 196 78.1
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 4.2e-86 321.6 198 73.2
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 7.2e-86 320.9 194 73.7
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.6e-85 319.7 198 73.7
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 2.1e-85 319.3 196 75.5
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 3.6e-85 318.5 196 76.5
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 6.1e-85 317.8 198 73.2
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 6.1e-85 317.8 198 73.7
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.3e-84 316.6 196 74.5
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 1.8e-84 316.2 185 79.5
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 6.7e-84 314.3 200 70.5
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 1.1e-83 313.5 198 70.2
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 5.7e-83 311.2 199 70.4
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 9.7e-83 310.5 198 69.7
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 9.7e-83 310.5 198 69.7
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 1.1e-81 307.0 198 70.2
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 1.1e-81 307.0 200 70.0
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 3.1e-81 305.4 198 70.7
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.2e-80 303.5 198 71.2
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.2e-80 303.5 198 69.2
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 2.0e-80 302.8 208 68.3
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 2.0e-80 302.8 196 70.4
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 4.5e-80 301.6 196 75.5
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 5.9e-80 301.2 200 67.5
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 7.7e-80 300.8 198 72.7
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 5.0e-79 298.1 185 70.8
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 5.0e-79 298.1 165 85.5
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 7.2e-78 294.3 196 71.9
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 9.4e-78 293.9 196 73.0
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 9.4e-78 293.9 165 84.2
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 2.7e-77 292.4 165 83.0
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 2.8e-74 282.3 199 67.8
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 1.1e-73 280.4 191 67.5
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 2.4e-73 279.3 165 81.2
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 7.7e-72 274.2 165 80.6
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 4.2e-70 268.5 221 60.6
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 7.2e-70 267.7 199 57.8
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 9.4e-70 267.3 196 66.3
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 3.6e-69 265.4 196 61.2
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 3.0e-68 262.3 196 60.2
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 3.9e-68 261.9 155 77.4
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 3.9e-68 261.9 155 77.4
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 2.0e-67 259.6 195 61.5
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.6e-64 249.2 141 83.0
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 2.5e-62 242.7 143 78.3
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 2.7e-61 239.2 199 58.8
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 1.0e-60 237.3 223 51.1
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 4.0e-60 235.3 165 70.9
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 8.0e-53 211.1 145 73.8
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 1.4e-52 210.3 143 73.4
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.8e-50 202.6 122 77.0
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.1e-49 200.7 122 77.0
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 7.5e-43 177.9 124 73.4
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 1.7e-42 176.8 95 85.3
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 3.7e-42 175.6 94 88.3
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 5.4e-41 171.8 196 48.0
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 3.6e-37 159.1 196 43.9
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 1.5e-35 153.7 139 56.1
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 2.2e-34 149.8 206 41.7
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 8.3e-34 147.9 257 39.7
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 1.2e-27 127.5 196 40.3
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 3.4e-27 125.9 76 72.4
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 5.4e-25 118.6 60 93.3
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 2.0e-24 116.7 74 70.3
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 5.6e-22 108.6 120 46.7
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 7.3e-22 108.2 53 98.1
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 3.6e-21 105.9 63 74.6
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 5.2e-20 102.1 55 87.3
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 2.9e-18 96.3 63 68.3
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 2.9e-18 96.3 52 88.5
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 4.1e-17 92.4 82 61.0
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 1.6e-16 90.5 55 80.0
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 2.7e-16 89.7 82 58.5
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 3.5e-16 89.4 55 78.2
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 3.5e-16 89.4 82 59.8
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 4.6e-16 89.0 55 78.2
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 1.0e-15 87.8 55 76.4
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 1.7e-15 87.0 55 76.4
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 6.6e-15 85.1 55 76.4
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 4.7e-13 79.0 202 31.2
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 2.4e-09 66.6 45 66.7
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 7.8e-08 61.6 39 71.8
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 7.8e-08 61.6 39 71.8


User provided reference genes

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