Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2533 Fragaria x ananassa HOM05D000088 ORTHO05D020740 5.1e-56 220.7 101 100.0
FAN26G3349 Fragaria x ananassa HOM05D000088 ORTHO05D020740 2.5e-42 175.3 80 98.8
FAN16G2657 Fragaria x ananassa HOM05D015346 ORTHO05D020740 8.2e-38 160.2 224 43.3
FAN09G4857 Fragaria x ananassa HOM05D000088 ORTHO05D020740 1.6e-25 119.4 53 98.1
FAN11G3157 Fragaria x ananassa HOM05D015346 ORTHO05D020740 6.7e-24 114.0 66 83.3
FvH4_4g30780 Fragaria vesca HOM05D000088 ORTHO05D002723 3.7e-22 108.2 64 81.2
FAN12G3418 Fragaria x ananassa HOM05D000088 ORTHO05D002723 3.7e-22 108.2 64 81.2
FAN22G1820 Fragaria x ananassa HOM05D000088 ORTHO05D002723 1.1e-21 106.7 64 79.7
FAN07G1717 Fragaria x ananassa HOM05D000088 ORTHO05D002723 1.8e-21 105.9 64 79.7
RcHm_v2.0_Chr4g0439171 Rosa chinensis HOM05D000088 ORTHO05D002723 1.8e-21 105.9 64 79.7
Prupe.1G279200 Prunus persica HOM05D000088 ORTHO05D002723 6.9e-21 104.0 64 78.1
FAN26G0476 Fragaria x ananassa HOM05D013168 ORTHO05D020740 1.2e-20 103.2 53 88.7
FAN06G0049 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.0e-20 102.4 46 97.8
Cc11_g12640 Coffea canephora HOM05D000088 ORTHO05D002723 2.2e-19 99.0 64 73.4
DCAR_027439 Daucus carota HOM05D000088 ORTHO05D002723 2.2e-19 99.0 64 71.9
DCAR_027440 Daucus carota HOM05D000088 ORTHO05D002723 2.2e-19 99.0 64 71.9
Cfa008933 Carpinus fangiana HOM05D000088 ORTHO05D002723 2.9e-19 98.6 64 73.4
Aqoxy3G03481 Aquilegia oxysepala HOM05D000088 ORTHO05D002723 5.0e-19 97.8 64 73.4
ECA233G4788 Erigeron canadensis HOM05D000088 ORTHO05D002723 5.0e-19 97.8 64 75.0
MBI02_g14226_MAGBIO Magnolia biondii HOM05D000088 ORTHO05D002723 6.5e-19 97.4 64 71.9
Atru.chr11.1723 Acer truncatum HOM05D000088 ORTHO05D002723 8.5e-19 97.1 64 71.9
Potri.010G164500 Populus trichocarpa HOM05D000088 ORTHO05D002723 8.5e-19 97.1 64 73.4
Sabra08G0068200 Salix brachista HOM05D000088 ORTHO05D002723 8.5e-19 97.1 64 73.4
Hund25210 Selenicereus undatus HOM05D000088 ORTHO05D002723 1.1e-18 96.7 64 73.4
GSVIVG01003214001 Vitis vinifera HOM05D000088 ORTHO05D002723 1.1e-18 96.7 64 71.9
CSS0044737 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D002723 1.4e-18 96.3 64 71.9
CSS0046870 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D002723 1.4e-18 96.3 64 71.9
ClCG05G024010 Citrullus lanatus HOM05D000088 ORTHO05D002723 1.4e-18 96.3 64 71.9
MELO3C012125.2 Cucumis melo HOM05D000088 ORTHO05D002723 1.4e-18 96.3 64 71.9
CsaV3_5G033030 Cucumis sativus L. HOM05D000088 ORTHO05D002723 1.4e-18 96.3 64 71.9
Duzib268G1625 Durio zibethinus HOM05D000088 ORTHO05D002723 1.4e-18 96.3 64 71.9
Sed0015795 Sechium edule HOM05D000088 ORTHO05D002723 1.4e-18 96.3 64 71.9
Duzib248G1678 Durio zibethinus HOM05D000088 ORTHO05D002723 1.9e-18 95.9 64 71.9
Lsat_1_v5_gn_8_48780 Lactuca sativa HOM05D000088 ORTHO05D002723 1.9e-18 95.9 86 59.3
TWI75G0144 Tripterygium wilfordii HOM05D000088 ORTHO05D002723 1.9e-18 95.9 64 70.3
TAR371G1093 Trochodendron aralioides HOM05D000088 ORTHO05D002723 1.9e-18 95.9 64 71.9
MD16G1067500 Malus domestica HOM05D000088 ORTHO05D002723 2.5e-18 95.5 64 71.9
COL.COLO4_27980 Corchorus olitorius HOM05D000088 ORTHO05D002723 3.2e-18 95.1 64 71.9
Gohir.A03G102400 Gossypium hirsutum HOM05D000088 ORTHO05D002723 3.2e-18 95.1 64 70.3
Gohir.D02G127300 Gossypium hirsutum HOM05D000088 ORTHO05D002723 3.2e-18 95.1 64 70.3
Gorai.005G142900 Gossypium raimondii HOM05D000088 ORTHO05D002723 3.2e-18 95.1 64 70.3
Potri.008G090800 Populus trichocarpa HOM05D000088 ORTHO05D002723 3.2e-18 95.1 64 71.9
Rhsim12G0132900 Rhododendron simsii HOM05D000088 ORTHO05D002723 3.2e-18 95.1 64 71.9
Duzib251G0440 Durio zibethinus HOM05D000088 ORTHO05D002723 4.2e-18 94.7 64 70.3
Cpa.g.sc1.62 Carica papaya HOM05D000088 ORTHO05D002723 5.5e-18 94.4 64 70.3
Dinv16687 Davidia involucrata HOM05D000088 ORTHO05D002723 5.5e-18 94.4 64 70.3
Nn4g23266 Nelumbo nucifera HOM05D000088 ORTHO05D002723 5.5e-18 94.4 64 70.3
Thecc.02G340000 Theobroma cacao HOM05D000088 ORTHO05D002723 5.5e-18 94.4 64 70.3
Gohir.A12G163500 Gossypium hirsutum HOM05D000088 ORTHO05D002723 7.2e-18 94.0 64 70.3
PSO478G1272 Papaver somniferum HOM05D000088 ORTHO05D002723 7.2e-18 94.0 105 48.6
Gorai.008G179300 Gossypium raimondii HOM05D000088 ORTHO05D002723 9.4e-18 93.6 64 70.3
Sc04g0007890 Simmondsia chinensis HOM05D000088 ORTHO05D002723 9.4e-18 93.6 64 70.3
Sabra10G0124900 Salix brachista HOM05D000088 ORTHO05D002723 1.2e-17 93.2 73 64.4
TAR622G0409 Trochodendron aralioides HOM05D000088 ORTHO05D002723 1.2e-17 93.2 64 70.3
CSS0019856 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D002723 1.6e-17 92.8 64 70.3
Hma1.2p1_0354F.1_g133840 Hydrangea macrophylla HOM05D000088 ORTHO05D002723 1.6e-17 92.8 64 68.8
Lj3A1033G51 Lonicera japonica HOM05D000088 ORTHO05D002723 1.6e-17 92.8 64 68.8
vmacro16350 Vaccinium macrocarpon HOM05D000088 ORTHO05D002723 1.6e-17 92.8 64 70.3
EL10Ac6g13259 Beta vulgaris HOM05D000088 ORTHO05D002723 2.1e-17 92.4 64 70.3
Lj4g0024034 Lotus japonicus HOM05D000088 ORTHO05D002723 2.1e-17 92.4 64 70.3
Nitab4.5_0000391g0280 Nicotiana tabacum HOM05D000088 ORTHO05D002723 2.1e-17 92.4 64 70.3
Nitab4.5_0004906g0030 Nicotiana tabacum HOM05D000088 ORTHO05D002723 2.1e-17 92.4 64 70.3
Peaxi162Scf00222g00246 Petunia axillaris HOM05D000088 ORTHO05D002723 2.1e-17 92.4 64 70.3
Sopen05g007840 Solanum pennellii HOM05D000088 ORTHO05D002723 2.1e-17 92.4 64 70.3
Actinidia33222 Actinidia chinensis HOM05D000088 ORTHO05D002723 2.7e-17 92.0 64 68.8
Dinv34091 Davidia involucrata HOM05D000088 ORTHO05D002723 2.7e-17 92.0 64 68.8
Gohir.A13G085100 Gossypium hirsutum HOM05D000088 ORTHO05D002723 2.7e-17 92.0 64 68.8
Gohir.D13G077900 Gossypium hirsutum HOM05D000088 ORTHO05D002723 2.7e-17 92.0 64 68.8
Gorai.013G089100 Gossypium raimondii HOM05D000088 ORTHO05D002723 2.7e-17 92.0 64 68.8
PGR102G1758 Punica granatum HOM05D000088 ORTHO05D002723 2.7e-17 92.0 64 68.8
FvH4_5g24830 Fragaria vesca HOM05D000539 ORTHO05D000592 3.6e-17 91.7 46 89.1
Glyma.01G052600 Glycine max HOM05D000088 ORTHO05D002723 3.6e-17 91.7 64 67.2
Gohir.D12G166500 Gossypium hirsutum HOM05D000088 ORTHO05D002723 3.6e-17 91.7 64 68.8
Lj6A784T66 Lonicera japonica HOM05D000088 ORTHO05D002723 3.6e-17 91.7 64 68.8
Manes.01G033000 Manihot esculenta HOM05D000088 ORTHO05D002723 3.6e-17 91.7 73 63.0
PGSC0003DMG400028346 Solanum tuberosum HOM05D000088 ORTHO05D002723 3.6e-17 91.7 64 68.8
TAR374G0898 Trochodendron aralioides HOM05D000088 ORTHO05D002723 3.6e-17 91.7 64 70.3
CiPaw.06G088300 Carya illinoinensis HOM05D000088 ORTHO05D002723 4.7e-17 91.3 64 68.8
DCAR_007175 Daucus carota HOM05D000088 ORTHO05D002723 4.7e-17 91.3 64 68.8
Glyma.07G228000 Glycine max HOM05D000088 ORTHO05D002723 4.7e-17 91.3 64 67.2
Glyma.20G031300 Glycine max HOM05D000088 ORTHO05D002723 4.7e-17 91.3 64 67.2
Actinidia12303 Actinidia chinensis HOM05D000088 ORTHO05D002723 6.1e-17 90.9 64 68.8
Manes.05G105800 Manihot esculenta HOM05D000088 ORTHO05D002723 6.1e-17 90.9 64 65.6
Sed0006999 Sechium edule HOM05D000088 ORTHO05D002723 6.1e-17 90.9 64 67.2
Solyc05g013070.3 Solanum lycopersicum HOM05D000088 ORTHO05D002723 6.1e-17 90.9 64 68.8
CiPaw.05G130000 Carya illinoinensis HOM05D000088 ORTHO05D002723 7.9e-17 90.5 64 68.8
HanXRQChr08g0210651 Helianthus annuus HOM05D000088 ORTHO05D002723 7.9e-17 90.5 64 68.8
Solyc01g010950.3 Solanum lycopersicum HOM05D000088 ORTHO05D002723 7.9e-17 90.5 64 68.8
Sopen01g006790 Solanum pennellii HOM05D000088 ORTHO05D002723 7.9e-17 90.5 64 68.8
vmacro01348 Vaccinium macrocarpon HOM05D000088 ORTHO05D002723 7.9e-17 90.5 64 68.8
Migut.L01250 Erythranthe guttata HOM05D000088 ORTHO05D002723 1.0e-16 90.1 64 68.8
DCAR_030993 Daucus carota HOM05D000088 ORTHO05D002723 1.4e-16 89.7 64 68.8
FAN27G2983 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.4e-16 89.7 46 87.0
THA.LOC104805177 Tarenaya hassleriana HOM05D000088 ORTHO05D002723 1.4e-16 89.7 64 65.6
MSTRG.13430 Avicennia marina HOM05D000088 ORTHO05D002723 1.8e-16 89.4 64 65.6
Sp1g12360 Schrenkiella parvula HOM05D000088 ORTHO05D002723 1.8e-16 89.4 64 65.6
THA.LOC104801810 Tarenaya hassleriana HOM05D000088 ORTHO05D002723 1.8e-16 89.4 64 65.6
ATR0564G423 Amborella trichopoda HOM05D000088 ORTHO05D002723 2.3e-16 89.0 64 67.2
AL1G25840 Arabidopsis lyrata HOM05D000088 ORTHO05D002723 2.3e-16 89.0 64 65.6
AT1G14000 Arabidopsis thaliana HOM05D000088 ORTHO05D002723 2.3e-16 89.0 64 65.6
BcaB08g34352 Brassica carinata HOM05D000088 ORTHO05D002723 2.3e-16 89.0 64 65.6
BcaB08g34353 Brassica carinata HOM05D000088 ORTHO05D002723 2.3e-16 89.0 64 65.6
BcaB08g34354 Brassica carinata HOM05D000088 ORTHO05D002723 2.3e-16 89.0 64 65.6
BcaC05g25296 Brassica carinata HOM05D000088 ORTHO05D002723 2.3e-16 89.0 64 65.6
A06p10000 Brassica napus HOM05D000088 ORTHO05D002723 2.3e-16 89.0 64 65.6
A09p62570 Brassica napus HOM05D000088 ORTHO05D002723 2.3e-16 89.0 64 65.6
C05p11760 Brassica napus HOM05D000088 ORTHO05D002723 2.3e-16 89.0 64 65.6
C08p46130 Brassica napus HOM05D000088 ORTHO05D002723 2.3e-16 89.0 64 65.6
BolC5t29922H Brassica oleracea HOM05D000088 ORTHO05D002723 2.3e-16 89.0 64 65.6
BolC8t52163H Brassica oleracea HOM05D000088 ORTHO05D002723 2.3e-16 89.0 64 65.6
BraA06t24186Z Brassica rapa HOM05D000088 ORTHO05D002723 2.3e-16 89.0 64 65.6
Ca_23883_v3 Cicer arietinum L. HOM05D000088 ORTHO05D002723 2.3e-16 89.0 64 65.6
Thhalv10007646m.g Eutrema salsugineum HOM05D000088 ORTHO05D002723 2.3e-16 89.0 64 65.6
SGA_v2.0_scaffold455G51908 Striga asiatica HOM05D000088 ORTHO05D002723 2.3e-16 89.0 64 64.1
SalBow8G2740 Salvia bowleyana HOM05D000088 ORTHO05D002723 3.0e-16 88.6 64 65.6
HPP92_016904 Vanilla planifolia HOM05D000088 ORTHO05D002723 3.0e-16 88.6 64 65.6
CARHR014370 Cardamine hirsuta HOM05D000088 ORTHO05D002723 3.9e-16 88.2 64 65.6
AUR62005837 Chenopodium quinoa HOM05D000088 ORTHO05D002723 3.9e-16 88.2 64 65.6
AUR62032831 Chenopodium quinoa HOM05D000088 ORTHO05D002723 3.9e-16 88.2 64 65.6
Carub.0001s1369 Capsella rubella HOM05D000088 ORTHO05D002723 5.1e-16 87.8 64 64.1
FAN22G0636 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.1e-16 87.8 57 75.4
Lj2g0027547 Lotus japonicus HOM05D000088 ORTHO05D002723 5.1e-16 87.8 64 62.5
MSTRG.2333 Avicennia marina HOM05D000088 ORTHO05D002723 6.7e-16 87.4 64 65.6
Ciclev10031585m.g Citrus clementina HOM05D000088 ORTHO05D002723 6.7e-16 87.4 64 64.1
FAN19G0444 Fragaria x ananassa HOM05D000539 ORTHO05D000592 6.7e-16 87.4 46 87.0
CDE07G0214 Ceratophyllum demersum HOM05D000088 ORTHO05D002723 8.8e-16 87.0 64 67.2
Aa31LG1G1030 Aethionema arabicum HOM05D000088 ORTHO05D002723 1.5e-15 86.3 64 62.5
MD13G1068700 Malus domestica HOM05D000088 ORTHO05D002723 1.5e-15 86.3 64 67.2
arahy.Tifrunner.gnm1.ann1.0QRZ59 Arachis hypogaea HOM05D000088 ORTHO05D002723 2.0e-15 85.9 64 60.9
Migut.E00071 Erythranthe guttata HOM05D000088 ORTHO05D002723 2.0e-15 85.9 64 64.1
PSO063G1164 Papaver somniferum HOM05D000088 ORTHO05D002723 2.0e-15 85.9 64 65.6
PSO063G1877 Papaver somniferum HOM05D000088 ORTHO05D002723 2.0e-15 85.9 64 65.6
PSO198G0068 Papaver somniferum HOM05D000088 ORTHO05D002723 2.0e-15 85.9 64 65.6
Phvul.002G091900 Phaseolus vulgaris HOM05D000088 ORTHO05D002723 2.0e-15 85.9 64 65.6
SGA_v2.0_scaffold389G50546 Striga asiatica HOM05D000088 ORTHO05D002723 2.0e-15 85.9 64 62.5
VMungo0251G2979 Vigna mungo HOM05D000088 ORTHO05D002723 2.0e-15 85.9 64 65.6
HanXRQChr17g0545371 Helianthus annuus HOM05D000088 ORTHO05D002723 2.6e-15 85.5 86 51.2
Phvul.002G169100 Phaseolus vulgaris HOM05D000088 ORTHO05D002723 3.3e-15 85.1 64 65.6
Medtr4g082325 Medicago truncatula HOM05D000088 ORTHO05D002723 4.4e-15 84.7 64 64.1
Psat7g156080 Pisum sativum HOM05D000088 ORTHO05D002723 4.4e-15 84.7 64 60.9
Lalb_Chr16g0385661 Lupinus albus HOM05D000088 ORTHO05D002723 5.7e-15 84.3 64 59.4
Lalb_Chr05g0220221 Lupinus albus HOM05D000088 ORTHO05D002723 7.4e-15 84.0 64 59.4
Lalb_Chr09g0329171 Lupinus albus HOM05D000088 ORTHO05D002723 9.7e-15 83.6 64 59.4
arahy.Tifrunner.gnm1.ann1.47C61G Arachis hypogaea HOM05D000088 ORTHO05D002723 1.3e-14 83.2 64 59.4
arahy.Tifrunner.gnm1.ann1.EJ8ZFW Arachis hypogaea HOM05D000088 ORTHO05D002723 1.3e-14 83.2 64 59.4
ECA246G4818 Erigeron canadensis HOM05D000088 ORTHO05D002723 1.3e-14 83.2 86 51.2
TPR.G34086 Trifolium pratense HOM05D000088 ORTHO05D002723 1.7e-14 82.8 64 59.4
Oeu021075.6 Olea europaea HOM05D000088 ORTHO05D002723 2.8e-14 82.0 97 46.4
VMungo1215G0771 Vigna mungo HOM05D000088 ORTHO05D002723 2.8e-14 82.0 64 62.5
TWI79G1035 Tripterygium wilfordii HOM05D000088 ORTHO05D002723 3.7e-14 81.6 64 60.9
Lsat_1_v5_gn_3_51840 Lactuca sativa HOM05D000088 ORTHO05D002723 1.8e-13 79.3 64 60.9
Os07g0632800 Oryza sativa ssp. japonica HOM05D000088 ORTHO05D002723 1.8e-13 79.3 64 59.4
BraA09t41620Z Brassica rapa HOM05D000088 ORTHO05D002723 5.3e-13 77.8 93 45.2
Rhsim12G0079000 Rhododendron simsii HOM05D000088 ORTHO05D002723 1.2e-12 76.6 90 47.8
Oeu016240.4 Olea europaea HOM05D000088 ORTHO05D002723 1.6e-12 76.3 148 35.1
FAN19G0052 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.0e-12 75.9 37 89.2
SEGI_00429 Sequoiadendron giganteum HOM05D000088 ORTHO05D002723 5.9e-12 74.3 87 47.1
Zm00001eb328410 Zea mays HOM05D000088 ORTHO05D002723 7.7e-12 73.9 64 56.2
CAN.G964.31 Capsicum annuum HOM05D000088 ORTHO05D002723 1.9e-10 69.3 52 63.5
Eucgr.B03199 Eucalyptus grandis HOM05D000088 ORTHO05D002723 5.5e-10 67.8 52 63.5
BolC1t01806H Brassica oleracea HOM05D059596 ORTHO05D039216 1.6e-09 66.2 52 61.5
FAN14G5169 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.6e-09 66.2 29 96.6
BcaC04g20116 Brassica carinata HOM05D000088 ORTHO05D002723 4.7e-09 64.7 52 57.7
FAN19G0485 Fragaria x ananassa HOM05D015346 ORTHO05D020740 8.8e-08 60.5 27 100.0
TAR622G1310 Trochodendron aralioides HOM05D000088 ORTHO05D002723 8.8e-08 60.5 44 70.5
FvH4_3g24321 Fragaria vesca HOM05D000539 ORTHO05D000592 7.5e-07 57.4 24 100.0
Haze_11962 Corylus avellana HOM05D000088 ORTHO05D002723 9.7e-07 57.0 29 79.3
arahy.Tifrunner.gnm1.ann1.SA054G Arachis hypogaea HOM05D000088 ORTHO05D002723 1.3e-06 56.6 29 72.4
Ah.03g134730 Amaranthus hybridus HOM05D000088 ORTHO05D002723 4.8e-06 54.7 28 78.6
FvH4_2g11482 Fragaria vesca HOM05D000539 ORTHO05D000592 8.2e-06 53.9 25 92.0
FAN12G0214 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.2e-06 53.9 25 92.0
FAN13G1596 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.2e-06 53.9 25 92.0


User provided reference genes

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