Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2484 Fragaria x ananassa HOM05D007486 ORTHO05D003673 8.8e-75 283.5 139 100.0
FAN21G3323 Fragaria x ananassa HOM05D007486 ORTHO05D003673 7.2e-69 263.8 130 99.2
FvH4_3g25580 Fragaria vesca HOM05D007486 ORTHO05D003673 7.5e-66 253.8 130 96.9
FAN11G1759 Fragaria x ananassa HOM05D007486 ORTHO05D003673 7.5e-66 253.8 130 96.9
RcHm_v2.0_Chr5g0046411 Rosa chinensis HOM05D007486 ORTHO05D003673 1.6e-55 219.5 145 80.0
Prupe.8G194300 Prunus persica HOM05D007486 ORTHO05D003673 6.6e-46 187.6 142 68.3
FAN25G2586 Fragaria x ananassa HOM05D007486 ORTHO05D003673 7.5e-42 174.1 91 92.3
MD10G1156500 Malus domestica HOM05D007486 ORTHO05D003673 1.4e-40 169.9 115 73.9
Lj3A22G11 Lonicera japonica HOM05D007486 ORTHO05D003673 6.2e-36 154.5 127 65.4
TWI18G0642 Tripterygium wilfordii HOM05D007486 ORTHO05D003673 2.3e-35 152.5 155 58.1
Potri.002G248100 Populus trichocarpa HOM05D007486 ORTHO05D003673 4.0e-35 151.8 141 58.9
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 1.2e-34 150.2 149 58.4
Manes.13G051900 Manihot esculenta HOM05D007486 ORTHO05D003673 2.6e-34 149.1 126 65.1
Thecc.01G215400 Theobroma cacao HOM05D007486 ORTHO05D003673 5.8e-34 147.9 136 58.1
Sabra02G0188800 Salix brachista HOM05D007486 ORTHO05D003673 2.9e-33 145.6 141 56.0
ClCG09G011490 Citrullus lanatus HOM05D007486 ORTHO05D003673 3.7e-33 145.2 114 65.8
Gorai.001G103500 Gossypium raimondii HOM05D007486 ORTHO05D003673 6.4e-33 144.4 141 56.0
Lj2P1121T80 Lonicera japonica HOM05D007486 ORTHO05D003673 8.3e-33 144.1 81 80.2
Gohir.D07G096200 Gossypium hirsutum HOM05D007486 ORTHO05D003673 1.4e-32 143.3 141 56.0
Gohir.A07G091500 Gossypium hirsutum HOM05D007486 ORTHO05D003673 1.9e-32 142.9 141 57.4
Haze_19599 Corylus avellana HOM05D007486 ORTHO05D003673 2.4e-32 142.5 149 56.4
Duzib133G0357 Durio zibethinus HOM05D007486 ORTHO05D003673 2.4e-32 142.5 139 54.7
Nitab4.5_0019111g0010 Nicotiana tabacum HOM05D007486 ORTHO05D003673 5.4e-32 141.4 94 71.3
Eucgr.H00752 Eucalyptus grandis HOM05D007486 ORTHO05D003673 9.2e-32 140.6 83 77.1
Nitab4.5_0003020g0090 Nicotiana tabacum HOM05D007486 ORTHO05D003673 9.2e-32 140.6 104 65.4
Oeu003624.1 Olea europaea HOM05D007486 ORTHO05D003673 9.2e-32 140.6 119 63.0
Cfa016598 Carpinus fangiana HOM05D007486 ORTHO05D003673 1.2e-31 140.2 147 57.1
GSVIVG01009330001 Vitis vinifera HOM05D007486 ORTHO05D003673 1.2e-31 140.2 129 56.6
CsaV3_3G030190 Cucumis sativus L. HOM05D007486 ORTHO05D003673 2.7e-31 139.0 126 61.1
Lalb_Chr20g0117691 Lupinus albus HOM05D007486 ORTHO05D003673 2.7e-31 139.0 92 67.4
CSS0040920 Camellia sinensis var. sinensis HOM05D007486 ORTHO05D003673 3.5e-31 138.7 81 75.3
Sed0025116 Sechium edule HOM05D007486 ORTHO05D003673 3.5e-31 138.7 126 62.7
CANSAT01G2277 Cannabis sativa HOM05D007486 ORTHO05D003673 6.0e-31 137.9 148 52.0
CDE08G0247 Ceratophyllum demersum HOM05D007486 ORTHO05D003673 6.0e-31 137.9 85 72.9
CDE08G0620 Ceratophyllum demersum HOM05D007486 ORTHO05D003673 6.0e-31 137.9 85 72.9
Actinidia23773 Actinidia chinensis HOM05D007486 ORTHO05D003673 1.0e-30 137.1 127 55.9
COL.COLO4_19319 Corchorus olitorius HOM05D007486 ORTHO05D003673 1.3e-30 136.7 134 55.2
PGR083G0899 Punica granatum HOM05D007486 ORTHO05D003673 1.3e-30 136.7 114 62.3
TAR625G0208 Trochodendron aralioides HOM05D007486 ORTHO05D003673 1.3e-30 136.7 81 76.5
Glyma.15G091700 Glycine max HOM05D007486 ORTHO05D003673 2.3e-30 136.0 86 73.3
Glyma.13G220800 Glycine max HOM05D007486 ORTHO05D003673 3.0e-30 135.6 128 59.4
VMungo0540G1511 Vigna mungo HOM05D007486 ORTHO05D003673 5.1e-30 134.8 86 74.4
MSTRG.12763 Avicennia marina HOM05D007486 ORTHO05D003673 6.6e-30 134.4 81 76.5
CANSAT01G2464 Cannabis sativa HOM05D007486 ORTHO05D003673 8.6e-30 134.0 146 53.4
CiPaw.13G051500 Carya illinoinensis HOM05D007486 ORTHO05D003673 8.6e-30 134.0 146 53.4
DCAR_008418 Daucus carota HOM05D007486 ORTHO05D003673 8.6e-30 134.0 81 76.5
Atru.chr6.1455 Acer truncatum HOM05D007486 ORTHO05D003673 1.9e-29 132.9 104 64.4
Aqoxy7G03388 Aquilegia oxysepala HOM05D007486 ORTHO05D003673 1.9e-29 132.9 81 74.1
Phvul.006G167600 Phaseolus vulgaris HOM05D007486 ORTHO05D003673 1.9e-29 132.9 86 72.1
PGSC0003DMG401020106 Solanum tuberosum HOM05D007486 ORTHO05D003673 3.3e-29 132.1 121 57.9
Cc01_g16440 Coffea canephora HOM05D007486 ORTHO05D003673 5.6e-29 131.3 96 68.8
MELO3C022733.2 Cucumis melo HOM05D007486 ORTHO05D003673 5.6e-29 131.3 126 58.7
BcaB06g26711 Brassica carinata HOM05D007486 ORTHO05D003673 9.5e-29 130.6 127 59.1
Lj6g0012572 Lotus japonicus HOM05D007486 ORTHO05D003673 9.5e-29 130.6 97 67.0
SalBow3G3646 Salvia bowleyana HOM05D007486 ORTHO05D003673 1.6e-28 129.8 134 51.5
THA.LOC104804636 Tarenaya hassleriana HOM05D007486 ORTHO05D003673 1.6e-28 129.8 81 74.1
Solyc06g083200.3 Solanum lycopersicum HOM05D007486 ORTHO05D003673 2.1e-28 129.4 121 54.5
Sopen06g034590 Solanum pennellii HOM05D007486 ORTHO05D003673 2.1e-28 129.4 121 56.2
Sp3g22830 Schrenkiella parvula HOM05D007486 ORTHO05D003673 2.8e-28 129.0 101 64.4
ATR0665G439 Amborella trichopoda HOM05D007486 ORTHO05D003673 3.6e-28 128.6 95 61.1
Ciclev10031787m.g Citrus clementina HOM05D007486 ORTHO05D003673 4.7e-28 128.3 140 52.1
Psat1g191400 Pisum sativum HOM05D007486 ORTHO05D003673 4.7e-28 128.3 112 57.1
A07p07090 Brassica napus HOM05D007486 ORTHO05D003673 6.2e-28 127.9 113 59.3
Migut.N00643 Erythranthe guttata HOM05D007486 ORTHO05D003673 6.2e-28 127.9 79 73.4
PSO017G6569 Papaver somniferum HOM05D007486 ORTHO05D003673 8.1e-28 127.5 78 70.5
BcaC06g35800 Brassica carinata HOM05D007486 ORTHO05D003673 1.8e-27 126.3 114 59.6
C07p10710 Brassica napus HOM05D007486 ORTHO05D003673 1.8e-27 126.3 114 59.6
BolC7t41537H Brassica oleracea HOM05D007486 ORTHO05D003673 1.8e-27 126.3 114 59.6
CAN.G874.18 Capsicum annuum HOM05D007486 ORTHO05D003673 2.3e-27 125.9 77 72.7
AT3G25210 Arabidopsis thaliana HOM05D007486 ORTHO05D003673 6.8e-27 124.4 130 53.8
BraA07t28496Z Brassica rapa HOM05D007486 ORTHO05D003673 6.8e-27 124.4 114 58.8
Aa31sc18G110 Aethionema arabicum HOM05D007486 ORTHO05D003673 2.6e-26 122.5 135 51.1
Thhalv10002564m.g Eutrema salsugineum HOM05D007486 ORTHO05D003673 2.6e-26 122.5 116 56.9
AL3G41110 Arabidopsis lyrata HOM05D007486 ORTHO05D003673 3.4e-26 122.1 85 68.2
HanXRQChr06g0172221 Helianthus annuus HOM05D007486 ORTHO05D003673 3.4e-26 122.1 114 54.4
EL10Ac7g17952 Beta vulgaris HOM05D007486 ORTHO05D003673 7.6e-26 120.9 130 50.0
Medtr2g018820 Medicago truncatula HOM05D007486 ORTHO05D003673 8.4e-25 117.5 112 54.5
QL09p049342 Quercus lobata HOM05D007486 ORTHO05D003673 8.4e-25 117.5 81 64.2
Nn7g38080 Nelumbo nucifera HOM05D007486 ORTHO05D003673 1.4e-24 116.7 103 56.3
SHI02273 Sapria himalayana HOM05D007486 ORTHO05D003673 1.4e-24 116.7 131 50.4
Sc17g0001920 Simmondsia chinensis HOM05D007486 ORTHO05D003673 4.1e-24 115.2 128 50.8
Rhsim01G0250000 Rhododendron simsii HOM05D007486 ORTHO05D003673 1.6e-23 113.2 127 48.8
Carub.0003s2558 Capsella rubella HOM05D007486 ORTHO05D003673 2.7e-23 112.5 131 51.1
HPP92_000898 Vanilla planifolia HOM05D007486 ORTHO05D003673 1.7e-22 109.8 94 57.4
MBI15_g18240_MAGBIO Magnolia biondii HOM05D007486 ORTHO05D003673 4.7e-20 101.7 78 57.7
SEGI_09666 Sequoiadendron giganteum HOM05D007402 ORTHO05D003673 8.9e-19 97.4 85 50.6
Zm00001eb374560 Zea mays HOM05D007486 ORTHO05D003673 6.2e-12 74.7 111 34.2
Os06g0184866 Oryza sativa ssp. japonica HOM05D007486 ORTHO05D003673 2.4e-11 72.8 77 40.3
CDE02G0959 Ceratophyllum demersum HOM05D007402 ORTHO05D003673 1.7e-09 66.6 136 33.8
SEGI_29222 Sequoiadendron giganteum HOM05D007402 ORTHO05D003673 8.4e-09 64.3 65 46.2
Lj3g0014788 Lotus japonicus HOM05D007402 ORTHO05D003673 1.7e-06 56.6 122 27.0
TAR623G1033 Trochodendron aralioides HOM05D007402 ORTHO05D003673 3.9e-06 55.5 152 28.9
CDE04G2722 Ceratophyllum demersum HOM05D008470 ORTHO05D010644 8.7e-06 54.3 107 29.0


User provided reference genes

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