Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2481 Fragaria x ananassa HOM05D005633 ORTHO05D007003 0.0e+00 1438.3 712 100.0
FAN25G1993 Fragaria x ananassa HOM05D005633 ORTHO05D007003 0.0e+00 1342.8 738 91.6
FAN21G3099 Fragaria x ananassa HOM05D005633 ORTHO05D007003 0.0e+00 1335.5 738 90.9
FvH4_3g08860 Fragaria vesca HOM05D005633 ORTHO05D007003 0.0e+00 1333.9 738 90.8
FAN11G1234 Fragaria x ananassa HOM05D005633 ORTHO05D007003 0.0e+00 1333.5 738 90.9
MD10G1291600 Malus domestica HOM05D005633 ORTHO05D007003 4.0e-280 968.0 753 68.1
QL05p041669 Quercus lobata HOM05D005633 ORTHO05D007003 4.9e-254 881.3 753 62.2
Cfa000508 Carpinus fangiana HOM05D005633 ORTHO05D007003 5.4e-253 877.9 749 62.5
CiPaw.09G062100 Carya illinoinensis HOM05D005633 ORTHO05D007003 3.2e-245 852.0 748 61.0
CANSAT35G1988 Cannabis sativa HOM05D005633 ORTHO05D007003 2.1e-236 822.8 747 59.3
Potri.004G046900 Populus trichocarpa HOM05D005633 ORTHO05D007003 2.0e-231 806.2 760 58.7
Manes.17G047800 Manihot esculenta HOM05D005633 ORTHO05D007003 1.7e-230 803.1 764 57.7
Sabra04G0029300 Salix brachista HOM05D005633 ORTHO05D007003 1.4e-229 800.0 761 58.5
Potri.011G056100 Populus trichocarpa HOM05D005633 ORTHO05D007003 1.9e-229 799.7 759 57.8
Thecc.06G183700 Theobroma cacao HOM05D005633 ORTHO05D007003 1.2e-228 797.0 753 57.6
Prupe.4G050600 Prunus persica HOM05D005633 ORTHO05D007003 7.4e-226 787.7 559 71.4
Atru.chr10.1839_Atru.chr10.1840 Acer truncatum HOM05D005633 ORTHO05D007003 4.8e-225 785.0 757 57.2
Duzib235G0140 Durio zibethinus HOM05D005633 ORTHO05D007003 3.1e-224 782.3 755 56.8
Gorai.010G155400 Gossypium raimondii HOM05D005633 ORTHO05D007003 1.1e-221 773.9 753 55.8
Gohir.A06G129500 Gossypium hirsutum HOM05D005633 ORTHO05D007003 1.6e-217 760.0 753 55.2
TWI63G0225 Tripterygium wilfordii HOM05D005633 ORTHO05D007003 2.1e-217 759.6 749 55.5
Sabra11G0038100 Salix brachista HOM05D005633 ORTHO05D007003 2.8e-217 759.2 784 54.6
arahy.Tifrunner.gnm1.ann1.QNV263 Arachis hypogaea HOM05D005633 ORTHO05D007003 6.2e-217 758.1 746 56.0
Gohir.D06G133500 Gossypium hirsutum HOM05D005633 ORTHO05D007003 5.3e-216 755.0 751 54.7
TPR.G16498 Trifolium pratense HOM05D005633 ORTHO05D007003 9.0e-216 754.2 744 55.2
Lj6g0019345 Lotus japonicus HOM05D005633 ORTHO05D007003 5.8e-215 751.5 741 55.5
Atru.chr10.1822_Atru.chr10.1823 Acer truncatum HOM05D005633 ORTHO05D007003 1.7e-214 750.0 717 57.3
Medtr2g014210 Medicago truncatula HOM05D005633 ORTHO05D007003 6.5e-214 748.0 747 54.9
GSVIVG01021090001 Vitis vinifera HOM05D005633 ORTHO05D007003 3.9e-211 738.8 757 55.4
TAR629G0889 Trochodendron aralioides HOM05D005633 ORTHO05D007003 5.1e-211 738.4 767 54.2
Phvul.006G183800 Phaseolus vulgaris HOM05D005633 ORTHO05D007003 4.8e-209 731.9 746 55.5
Glyma.13G237200 Glycine max HOM05D005633 ORTHO05D007003 8.2e-209 731.1 751 54.7
COL.COLO4_31438 Corchorus olitorius HOM05D005633 ORTHO05D007003 1.1e-208 730.7 810 51.7
Psat1g203720 Pisum sativum HOM05D005633 ORTHO05D007003 3.4e-207 725.7 744 53.9
Ca_00349_v3 Cicer arietinum L. HOM05D005633 ORTHO05D007003 5.0e-206 721.8 747 53.9
Lalb_Chr18g0059461 Lupinus albus HOM05D005633 ORTHO05D007003 5.0e-206 721.8 734 54.0
arahy.Tifrunner.gnm1.ann1.U0Q0B6 Arachis hypogaea HOM05D005633 ORTHO05D007003 7.9e-204 714.5 746 54.2
Hma1.2p1_0208F.1_g088350 Hydrangea macrophylla HOM05D005633 ORTHO05D007003 1.4e-203 713.8 758 54.0
Rhsim02G0132600 Rhododendron simsii HOM05D005633 ORTHO05D007003 4.3e-202 708.8 750 52.0
ClCG01G023110 Citrullus lanatus HOM05D005633 ORTHO05D007003 1.4e-197 693.7 757 51.4
CsaV3_6G050250 Cucumis sativus L. HOM05D005633 ORTHO05D007003 1.2e-196 690.6 763 51.4
Sed0020009 Sechium edule HOM05D005633 ORTHO05D007003 1.1e-194 684.1 757 50.6
Nn1g04161 Nelumbo nucifera HOM05D005633 ORTHO05D007003 2.6e-194 682.9 755 51.9
Cc02_g13630 Coffea canephora HOM05D005633 ORTHO05D007003 4.4e-194 682.2 763 50.7
Ciclev10014582m.g Citrus clementina HOM05D005633 ORTHO05D007003 3.7e-193 679.1 645 58.6
Lj2C290G9 Lonicera japonica HOM05D005633 ORTHO05D007003 3.1e-192 676.0 757 51.7
Haze_06405 Corylus avellana HOM05D005633 ORTHO05D007003 1.3e-190 670.6 567 61.9
DCAR_004057 Daucus carota HOM05D005633 ORTHO05D007003 1.1e-189 667.5 754 49.3
Nitab4.5_0016285g0010 Nicotiana tabacum HOM05D005633 ORTHO05D007003 3.2e-189 666.0 750 50.8
Solyc02g077900.4 Solanum lycopersicum HOM05D005633 ORTHO05D007003 2.7e-188 662.9 762 50.4
Dinv17333 Davidia involucrata HOM05D005633 ORTHO05D007003 3.6e-188 662.5 749 51.7
Sopen02g022750 Solanum pennellii HOM05D005633 ORTHO05D007003 3.9e-187 659.1 762 49.9
Actinidia26133 Actinidia chinensis HOM05D005633 ORTHO05D007003 1.1e-184 651.0 655 54.2
Oeu029366.1 Olea europaea HOM05D005633 ORTHO05D007003 1.4e-184 650.6 739 50.6
Migut.M01122 Erythranthe guttata HOM05D005633 ORTHO05D007003 7.0e-184 648.3 742 49.7
Sc05g0007520 Simmondsia chinensis HOM05D005633 ORTHO05D007003 7.0e-184 648.3 761 49.0
CARHR027810 Cardamine hirsuta HOM05D005633 ORTHO05D007003 1.6e-183 647.1 739 49.9
CAN.G529.25 Capsicum annuum HOM05D005633 ORTHO05D007003 2.0e-183 646.7 769 49.3
PSO675G0497 Papaver somniferum HOM05D005633 ORTHO05D007003 5.9e-183 645.2 766 49.3
THA.LOC104820553 Tarenaya hassleriana HOM05D005633 ORTHO05D007003 6.5e-182 641.7 756 49.2
Thhalv10006942m.g Eutrema salsugineum HOM05D005633 ORTHO05D007003 1.1e-181 641.0 744 48.8
AT1G28320 Arabidopsis thaliana HOM05D005633 ORTHO05D007003 1.9e-181 640.2 740 48.8
Sp1g24540 Schrenkiella parvula HOM05D005633 ORTHO05D007003 3.2e-181 639.4 750 48.8
PGR042G0490 Punica granatum HOM05D005633 ORTHO05D007003 7.2e-181 638.3 742 47.6
RcHm_v2.0_Chr5g0008891 Rosa chinensis HOM05D005633 ORTHO05D007003 7.2e-181 638.3 375 84.5
SalBow8G0351 Salvia bowleyana HOM05D005633 ORTHO05D007003 7.2e-181 638.3 765 49.2
PGSC0003DMG400029731 Solanum tuberosum HOM05D005633 ORTHO05D007003 1.6e-180 637.1 773 48.6
AL1G41900 Arabidopsis lyrata HOM05D005633 ORTHO05D007003 1.0e-179 634.4 741 48.4
VMungo0540G1564 Vigna mungo HOM05D005633 ORTHO05D007003 1.8e-179 633.6 746 50.9
BraA09t39286Z Brassica rapa HOM05D005633 ORTHO05D007003 9.1e-176 621.3 741 49.3
A09p37740 Brassica napus HOM05D005633 ORTHO05D007003 2.0e-175 620.2 739 48.8
EL10Ac8g20419 Beta vulgaris HOM05D005633 ORTHO05D007003 4.5e-175 619.0 742 48.7
Carub.0001s2677 Capsella rubella HOM05D005633 ORTHO05D007003 7.7e-175 618.2 749 48.1
Aqoxy1G02351 Aquilegia oxysepala HOM05D005633 ORTHO05D007003 1.1e-173 614.4 759 48.9
C05p27200 Brassica napus HOM05D005633 ORTHO05D007003 8.0e-172 608.2 732 49.0
MELO3C007272.2 Cucumis melo HOM05D005633 ORTHO05D007003 1.2e-170 604.4 708 49.9
ECA248G0126 Erigeron canadensis HOM05D005633 ORTHO05D007003 2.0e-170 603.6 715 48.4
BolC5t31434H Brassica oleracea HOM05D005633 ORTHO05D007003 1.7e-169 600.5 744 48.4
Hund21211 Selenicereus undatus HOM05D005633 ORTHO05D007003 2.8e-169 599.7 803 45.7
SGA_v2.0_scaffold100G29699 Striga asiatica HOM05D005633 ORTHO05D007003 4.8e-169 599.0 744 47.8
Actinidia07591 Actinidia chinensis HOM05D005633 ORTHO05D007003 6.3e-169 598.6 760 47.0
Aa31sc86G40 Aethionema arabicum HOM05D005633 ORTHO05D007003 1.4e-168 597.4 770 46.5
HanXRQChr01g0004651 Helianthus annuus HOM05D005633 ORTHO05D007003 2.7e-167 593.2 726 47.9
Ah.14g089640 Amaranthus hybridus HOM05D005633 ORTHO05D007003 2.3e-166 590.1 724 47.8
Lsat_1_v5_gn_1_124421 Lactuca sativa HOM05D005633 ORTHO05D007003 6.1e-164 582.0 728 46.2
Nitab4.5_0002219g0050 Nicotiana tabacum HOM05D005633 ORTHO05D007003 1.5e-162 577.4 748 46.4
Peaxi162Scf01100g00118 Petunia axillaris HOM05D005633 ORTHO05D007003 1.5e-162 577.4 741 47.0
ATR0752G234 Amborella trichopoda HOM05D005633 ORTHO05D007003 2.6e-162 576.6 733 46.2
Eucgr.E03258 Eucalyptus grandis HOM05D005633 ORTHO05D007003 4.1e-160 569.3 559 54.9
AUR62014850 Chenopodium quinoa HOM05D005633 ORTHO05D007003 3.4e-154 549.7 742 45.1
vmacro15920 Vaccinium macrocarpon HOM05D005633 ORTHO05D007003 8.3e-153 545.0 529 55.0
Cpa.g.sc373.8 Carica papaya HOM05D005633 ORTHO05D007003 2.0e-146 523.9 496 57.3
SEGI_06204 Sequoiadendron giganteum HOM05D005633 ORTHO05D007003 1.2e-143 514.6 760 43.6
RcHm_v2.0_Chr5g0008901 Rosa chinensis HOM05D005633 ORTHO05D007003 3.9e-142 509.6 310 84.5
AUR62017045 Chenopodium quinoa HOM05D005633 ORTHO05D007003 6.6e-142 508.8 740 42.8
Zm00001eb291760 Zea mays HOM05D005633 ORTHO05D007003 2.7e-135 486.9 763 39.1
Mapoly0045s0140 Marchantia polymorpha HOM05D005633 ORTHO05D007003 7.1e-128 462.2 814 38.6
Pp3c24_9210 Physcomitrium patens HOM05D005633 ORTHO05D007003 7.1e-128 462.2 778 39.1
Os05g0497700 Oryza sativa ssp. japonica HOM05D005633 ORTHO05D007003 5.6e-125 452.6 728 40.1
Hma1.2p1_0208F.1_g088340 Hydrangea macrophylla HOM05D005633 ORTHO05D007003 1.2e-119 434.9 462 53.7
AagrBONN_evm.TU.Sc2ySwM_228.2766 Anthoceros agrestis HOM05D005633 ORTHO05D007003 2.8e-116 423.7 790 38.4
Thhalv10007180m.g Eutrema salsugineum HOM05D005633 ORTHO05D007003 3.1e-115 420.2 742 38.3
Glyma.15G076300 Glycine max HOM05D005633 ORTHO05D007003 1.0e-110 405.2 728 39.1
unitig_27.g24969 Utricularia gibba HOM05D005633 ORTHO05D007003 2.9e-97 360.5 768 34.4
BcaB07g32447 Brassica carinata HOM05D005633 ORTHO05D007003 8.2e-92 342.4 364 53.6
MBI02_g35620_MAGBIO Magnolia biondii HOM05D005633 ORTHO05D007003 1.4e-80 305.1 498 40.8
BcaB07g32448 Brassica carinata HOM05D005633 ORTHO05D007003 1.9e-72 278.1 310 48.7
CDE11G0431 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 4.4e-69 266.9 341 44.0
CBR_g49783 Chara braunii HOM05D005633 ORTHO05D001702 2.0e-58 231.5 609 32.0
HPP92_025315 Vanilla planifolia HOM05D005633 ORTHO05D007003 2.0e-58 231.5 421 38.0
Haze_06406 Corylus avellana HOM05D005633 ORTHO05D007003 2.7e-58 231.1 204 61.3
HPP92_025316 Vanilla planifolia HOM05D005633 ORTHO05D007003 5.0e-49 200.3 220 51.8
Cpa.g.sc373.5 Carica papaya HOM05D005633 ORTHO05D007003 3.3e-48 197.6 173 57.8
Actinidia39471 Actinidia chinensis HOM05D005633 ORTHO05D007003 2.3e-41 174.9 393 36.4
MBI02_g35622_MAGBIO Magnolia biondii HOM05D005633 ORTHO05D007003 2.6e-37 161.4 255 43.9
MCO12G111 Micromonas commoda HOM05D005633 ORTHO05D007003 5.2e-30 137.1 717 27.9
CDE11G0408 Ceratophyllum demersum HOM05D005633 ORTHO05D007003 4.4e-29 134.0 258 35.7
vmacro15921 Vaccinium macrocarpon HOM05D005633 ORTHO05D007003 1.4e-27 129.0 142 47.2
MBI02_g19360_MAGBIO Magnolia biondii HOM05D005633 ORTHO05D007003 1.1e-24 119.4 257 34.2
MBI02_g35619_MAGBIO Magnolia biondii HOM05D005633 ORTHO05D007003 1.5e-24 119.0 221 38.9
MapolyY_B0048 Marchantia polymorpha HOM05D005633 ORTHO05D007003 1.2e-21 109.4 124 43.5
MD05G1312100 Malus domestica HOM05D005633 ORTHO05D007003 9.9e-21 106.3 61 82.0
MBI02_g35618_MAGBIO Magnolia biondii HOM05D005633 ORTHO05D007003 3.5e-18 97.8 287 29.6
Cre12.g548200 Chlamydomonas reinhardtii HOM05D005633 ORTHO05D007003 1.4e-11 75.9 112 34.8
MBI02_g19359_MAGBIO Magnolia biondii HOM05D005633 ORTHO05D007003 6.0e-10 70.5 55 54.5
Sabra05G0135200 Salix brachista HOM05D005633 ORTHO05D007003 1.7e-09 68.9 45 68.9
CBR_g8333 Chara braunii HOM05D001104 ORTHO05D006535 8.7e-09 66.6 165 31.5
CBR_g49781 Chara braunii HOM05D005633 ORTHO05D007003 5.6e-08 63.9 321 25.5
CDE05G1605 Ceratophyllum demersum HOM05D005633 ORTHO05D007003 4.0e-06 57.8 57 52.6
AUR62034399 Chenopodium quinoa HOM05D001104 ORTHO05D008876 6.9e-06 57.0 135 31.1


User provided reference genes

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