Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2471 Fragaria x ananassa HOM05D007127 ORTHO05D008803 2.5e-167 592.0 302 100.0
FAN16G1842 Fragaria x ananassa HOM05D000097 ORTHO05D008803 2.3e-104 382.9 203 96.6
FAN25G0358 Fragaria x ananassa HOM05D007127 ORTHO05D008803 2.8e-94 349.4 200 89.0
FAN11G0992 Fragaria x ananassa HOM05D007127 ORTHO05D008803 8.3e-94 347.8 224 81.7
RcHm_v2.0_Chr5g0075531 Rosa chinensis HOM05D007127 ORTHO05D008803 3.5e-84 315.8 200 82.5
Prupe.6G028700 Prunus persica HOM05D007127 ORTHO05D008803 6.6e-75 285.0 216 72.7
FvH4_3g42230 Fragaria vesca HOM05D007127 ORTHO05D008803 1.9e-74 283.5 144 96.5
MD03G1036700 Malus domestica HOM05D007127 ORTHO05D008803 6.0e-68 261.9 205 68.3
QL08p002654 Quercus lobata HOM05D007127 ORTHO05D008803 7.8e-60 235.0 206 60.7
Duzib213G0866 Durio zibethinus HOM05D007127 ORTHO05D008803 7.3e-58 228.4 241 55.2
Dinv40887 Davidia involucrata HOM05D003312 ORTHO05D003792 1.2e-57 227.6 206 59.7
Potri.001G467100 Populus trichocarpa HOM05D007127 ORTHO05D008803 9.9e-55 218.0 206 59.7
Ciclev10009425m.g Citrus clementina HOM05D007127 ORTHO05D008803 1.7e-54 217.2 206 58.3
Eucgr.F03672 Eucalyptus grandis HOM05D007127 ORTHO05D008803 2.2e-54 216.9 194 59.3
Thecc.07G007600 Theobroma cacao HOM05D007127 ORTHO05D008803 2.9e-54 216.5 206 57.3
GSVIVG01014748001 Vitis vinifera HOM05D007127 ORTHO05D008803 3.7e-54 216.1 206 59.2
Sabra16G0317000 Salix brachista HOM05D007127 ORTHO05D008803 1.2e-52 211.1 177 63.3
Gohir.D01G078500 Gossypium hirsutum HOM05D007127 ORTHO05D008803 1.6e-52 210.7 206 56.3
TAR627G0858 Trochodendron aralioides HOM05D007127 ORTHO05D008803 4.6e-52 209.1 206 58.3
Haze_09871 Corylus avellana HOM05D007127 ORTHO05D008803 1.7e-51 207.2 286 45.5
Gorai.002G103100 Gossypium raimondii HOM05D007127 ORTHO05D008803 1.7e-51 207.2 206 55.8
Hma1.2p1_0193F.1_g083963 Hydrangea macrophylla HOM05D007127 ORTHO05D008803 3.9e-51 206.1 177 63.3
CAN.G492.47 Capsicum annuum HOM05D007127 ORTHO05D008803 1.5e-50 204.1 196 59.2
PGR031G3625 Punica granatum HOM05D007127 ORTHO05D008803 1.5e-50 204.1 183 59.6
Gohir.A01G094000 Gossypium hirsutum HOM05D007127 ORTHO05D008803 4.3e-50 202.6 175 61.7
Lalb_Chr15g0082331 Lupinus albus HOM05D007127 ORTHO05D008803 4.3e-50 202.6 201 57.2
Solyc10g005870.4 Solanum lycopersicum HOM05D007127 ORTHO05D008803 1.2e-49 201.1 175 61.1
CANSAT11G1343 Cannabis sativa HOM05D007127 ORTHO05D008803 2.8e-49 199.9 223 54.7
Carub.0007s1432 Capsella rubella HOM05D007127 ORTHO05D008803 2.8e-49 199.9 159 65.4
Sopen10g001820 Solanum pennellii HOM05D007127 ORTHO05D008803 2.8e-49 199.9 160 65.0
C07p55280 Brassica napus HOM05D007127 ORTHO05D008803 3.6e-49 199.5 164 64.6
A03p56780 Brassica napus HOM05D000491 ORTHO05D008803 6.2e-49 198.7 163 63.8
DCAR_013258 Daucus carota HOM05D007127 ORTHO05D008803 8.1e-49 198.4 159 63.5
Nn1g07579 Nelumbo nucifera HOM05D007127 ORTHO05D008803 8.1e-49 198.4 209 52.6
CsaV3_7G023830 Cucumis sativus L. HOM05D007127 ORTHO05D008803 1.4e-48 197.6 160 63.1
Peaxi162Scf00339g00004 Petunia axillaris HOM05D007127 ORTHO05D008803 1.8e-48 197.2 160 63.8
Sp7g24510 Schrenkiella parvula HOM05D007127 ORTHO05D008803 1.8e-48 197.2 159 64.8
AT4G26555 Arabidopsis thaliana HOM05D007127 ORTHO05D008803 2.4e-48 196.8 159 64.2
MSTRG.7016 Avicennia marina HOM05D007127 ORTHO05D008803 2.4e-48 196.8 174 60.3
MBI14_g43080_MAGBIO Magnolia biondii HOM05D007127 ORTHO05D008803 4.0e-48 196.1 156 65.4
CARHR234140 Cardamine hirsuta HOM05D007127 ORTHO05D008803 5.2e-48 195.7 159 64.2
AL7G26340 Arabidopsis lyrata HOM05D007127 ORTHO05D008803 6.8e-48 195.3 159 62.9
Cc05_g15330 Coffea canephora HOM05D007127 ORTHO05D008803 6.8e-48 195.3 222 52.3
HanXRQChr08g0232691 Helianthus annuus HOM05D007127 ORTHO05D008803 6.8e-48 195.3 200 53.5
BolC7t45986H Brassica oleracea HOM05D000491 ORTHO05D000359 8.9e-48 194.9 158 65.2
PGSC0003DMG400014371 Solanum tuberosum HOM05D007127 ORTHO05D008803 1.5e-47 194.1 200 56.5
BcaC06g32738 Brassica carinata HOM05D007127 ORTHO05D008803 2.6e-47 193.4 158 64.6
Thhalv10026261m.g Eutrema salsugineum HOM05D007127 ORTHO05D008803 2.6e-47 193.4 159 63.5
BraA03t14746Z Brassica rapa HOM05D000491 ORTHO05D000359 3.4e-47 193.0 158 63.9
TWI39G0351 Tripterygium wilfordii HOM05D007127 ORTHO05D008803 5.8e-47 192.2 195 55.9
THA.LOC104811685 Tarenaya hassleriana HOM05D007127 ORTHO05D008803 9.9e-47 191.4 155 64.5
ClCG09G021550 Citrullus lanatus HOM05D007127 ORTHO05D008803 2.9e-46 189.9 224 51.3
Glyma.18G074000 Glycine max HOM05D007127 ORTHO05D008803 2.9e-46 189.9 160 63.8
EL10Ac4g07544 Beta vulgaris HOM05D007127 ORTHO05D008803 3.8e-46 189.5 160 61.9
Ca_14836_v3 Cicer arietinum L. HOM05D007127 ORTHO05D008803 8.4e-46 188.3 205 53.2
Migut.M01626 Erythranthe guttata HOM05D007127 ORTHO05D008803 8.4e-46 188.3 174 59.8
vmacro11616 Vaccinium macrocarpon HOM05D007127 ORTHO05D008803 1.4e-45 187.6 177 59.3
SGA_v2.0_scaffold171G38842 Striga asiatica HOM05D007127 ORTHO05D008803 1.9e-45 187.2 157 61.8
Lj6g0006308 Lotus japonicus HOM05D007127 ORTHO05D008803 2.4e-45 186.8 202 55.0
SalBow8G4011 Salvia bowleyana HOM05D007127 ORTHO05D008803 2.4e-45 186.8 172 58.7
arahy.Tifrunner.gnm1.ann1.I2ZJD2 Arachis hypogaea HOM05D007127 ORTHO05D008803 3.2e-45 186.4 163 62.0
Aqoxy1G04096 Aquilegia oxysepala HOM05D007127 ORTHO05D008803 4.2e-45 186.0 162 62.3
Lj8A180T97 Lonicera japonica HOM05D007127 ORTHO05D008803 4.2e-45 186.0 149 65.8
ECA246G1683 Erigeron canadensis HOM05D007127 ORTHO05D008803 5.4e-45 185.7 156 61.5
TPR.G17936 Trifolium pratense HOM05D007127 ORTHO05D008803 5.4e-45 185.7 202 53.0
Cfa021894 Carpinus fangiana HOM05D007127 ORTHO05D008803 1.2e-44 184.5 149 64.4
Rhsim06G0232700 Rhododendron simsii HOM05D007127 ORTHO05D008803 1.2e-44 184.5 211 53.1
PSO210G6734 Papaver somniferum HOM05D007127 ORTHO05D008803 2.1e-44 183.7 203 49.3
Lsat_1_v5_gn_5_2120 Lactuca sativa HOM05D007127 ORTHO05D008803 1.0e-43 181.4 161 59.6
AUR62017126 Chenopodium quinoa HOM05D007127 ORTHO05D008803 1.7e-43 180.6 212 50.5
Oeu005465.2 Olea europaea HOM05D007127 ORTHO05D008803 1.7e-43 180.6 172 58.1
Medtr3g060750 Medicago truncatula HOM05D007127 ORTHO05D008803 6.6e-43 178.7 205 52.2
COL.COLO4_07744 Corchorus olitorius HOM05D007127 ORTHO05D008803 9.0e-40 168.3 227 46.3
Aa31LG5G11910 Aethionema arabicum HOM05D007127 ORTHO05D008803 1.5e-39 167.5 125 68.0
AUR62035684 Chenopodium quinoa HOM05D007127 ORTHO05D008803 2.0e-39 167.2 214 46.7
CiPaw.11G207200 Carya illinoinensis HOM05D007127 ORTHO05D008803 1.7e-38 164.1 118 68.6
Actinidia10571 Actinidia chinensis HOM05D007127 ORTHO05D008803 8.4e-38 161.8 173 54.9
ATR0751G120 Amborella trichopoda HOM05D007127 ORTHO05D008803 4.2e-37 159.5 125 66.4
HPP92_021913 Vanilla planifolia HOM05D007127 ORTHO05D008803 9.3e-37 158.3 159 53.5
Os02g0199300 Oryza sativa ssp. japonica HOM05D007127 ORTHO05D008803 1.2e-36 157.9 127 61.4
SEGI_17483 Sequoiadendron giganteum HOM05D007127 ORTHO05D008803 1.6e-36 157.5 136 57.4
Atru.BG.133.p Acer truncatum HOM05D007127 ORTHO05D008803 1.0e-35 154.8 110 68.2
RcHm_v2.0_Chr5g0075491 Rosa chinensis HOM05D007127 ORTHO05D008803 1.9e-34 150.6 116 70.7
arahy.Tifrunner.gnm1.ann1.SL03ST Arachis hypogaea HOM05D007127 ORTHO05D008803 3.3e-34 149.8 185 49.2
Cpa.g.sc12.104 Carica papaya HOM05D007127 ORTHO05D008803 7.4e-34 148.7 110 67.3
Hma1.2p1_0193F.1_g083966 Hydrangea macrophylla HOM05D007127 ORTHO05D008803 2.1e-33 147.1 107 67.3
Actinidia30375 Actinidia chinensis HOM05D007127 ORTHO05D008803 2.8e-33 146.7 113 64.6
SalBow1G6811 Salvia bowleyana HOM05D007127 ORTHO05D008803 3.6e-33 146.4 141 54.6
Zm00001eb205840 Zea mays HOM05D007127 ORTHO05D008803 6.2e-33 145.6 137 54.7
Manes.09G155700 Manihot esculenta HOM05D007127 ORTHO05D008803 1.4e-32 144.4 138 61.6
VMungo0540G0661 Vigna mungo HOM05D007127 ORTHO05D008803 2.0e-31 140.6 169 52.7
AagrBONN_evm.TU.Sc2ySwM_368.1220 Anthoceros agrestis HOM05D007127 ORTHO05D008803 4.5e-31 139.4 154 50.6
Pp3c5_10020 Physcomitrium patens HOM05D007127 ORTHO05D008803 4.9e-30 136.0 159 46.5
Hund01879 Selenicereus undatus HOM05D007127 ORTHO05D008803 6.4e-30 135.6 214 42.5
Glyma.08G333000 Glycine max HOM05D007127 ORTHO05D008803 7.1e-29 132.1 110 61.8
Nitab4.5_0001622g0030 Nicotiana tabacum HOM05D007127 ORTHO05D008803 7.1e-29 132.1 102 65.7
CDE11G0730 Ceratophyllum demersum HOM05D007127 ORTHO05D008803 3.5e-28 129.8 97 67.0
SMO356G0109 Selaginella moellendorffii HOM05D007127 ORTHO05D008803 7.1e-21 105.5 110 49.1
Phvul.006G059272 Phaseolus vulgaris HOM05D007127 ORTHO05D008803 6.0e-20 102.4 83 63.9
FvH4_3g42220 Fragaria vesca HOM05D000097 ORTHO05D000041 1.3e-19 101.3 74 74.3
FAN11G0227 Fragaria x ananassa HOM05D000097 ORTHO05D009232 8.7e-19 98.6 71 77.5
RcHm_v2.0_Chr5g0075521 Rosa chinensis HOM05D007127 ORTHO05D008803 1.1e-18 98.2 82 67.1
Cre07.g315700 Chlamydomonas reinhardtii HOM05D007127 ORTHO05D008803 1.6e-17 94.4 143 40.6
Medtr3g060790 Medicago truncatula HOM05D007127 ORTHO05D008803 3.9e-11 73.2 53 58.5
MCO15G274 Micromonas commoda HOM05D007127 ORTHO05D008803 5.1e-11 72.8 146 32.2
Sed0017011 Sechium edule HOM05D007127 ORTHO05D008803 1.3e-09 68.2 102 44.1
Medtr3g060760 Medicago truncatula HOM05D007127 ORTHO05D008803 1.6e-09 67.8 61 49.2
Medtr1g061080 Medicago truncatula HOM05D007400 ORTHO05D009351 8.2e-09 65.5 174 30.5
Psat6g078400 Pisum sativum HOM05D007400 ORTHO05D009351 2.4e-08 63.9 152 30.9
Glyma.10G066600 Glycine max HOM05D007400 ORTHO05D009351 4.1e-08 63.2 145 31.0
VMungo0720G1846 Vigna mungo HOM05D007400 ORTHO05D009351 1.2e-07 61.6 122 32.0
Sopen02g018260 Solanum pennellii HOM05D007400 ORTHO05D009351 1.5e-07 61.2 130 33.8
MELO3C028909.2 Cucumis melo HOM05D007127 ORTHO05D008803 4.5e-07 59.7 61 52.5
Solyc02g069130.3 Solanum lycopersicum HOM05D007400 ORTHO05D009351 4.5e-07 59.7 130 33.1
Eucgr.E01894 Eucalyptus grandis HOM05D007400 ORTHO05D009351 5.9e-07 59.3 146 32.2
Peaxi162Scf00149g01015 Petunia axillaris HOM05D007400 ORTHO05D009351 5.9e-07 59.3 130 33.1
TPR.G5680 Trifolium pratense HOM05D007400 ORTHO05D009351 5.9e-07 59.3 148 29.7
Zm00001eb416620 Zea mays HOM05D000723 ORTHO05D008803 5.9e-07 59.3 85 36.5
Ciclev10016614m.g Citrus clementina HOM05D007400 ORTHO05D009351 1.3e-06 58.2 124 34.7
Carub.0007s2138 Capsella rubella HOM05D007400 ORTHO05D009351 1.7e-06 57.8 117 33.3
Potri.012G119800 Populus trichocarpa HOM05D007400 ORTHO05D009351 1.7e-06 57.8 124 33.1
AL7G34250 Arabidopsis lyrata HOM05D007400 ORTHO05D009351 2.2e-06 57.4 117 32.5
CARHR226600 Cardamine hirsuta HOM05D007400 ORTHO05D009351 2.2e-06 57.4 133 30.8
PGR042G1002 Punica granatum HOM05D007400 ORTHO05D009351 2.9e-06 57.0 150 30.0
AT4G19830 Arabidopsis thaliana HOM05D007400 ORTHO05D009351 3.8e-06 56.6 117 32.5
CSS0019726 Camellia sinensis var. sinensis HOM05D007400 ORTHO05D009351 3.8e-06 56.6 137 31.4
Lalb_Chr09g0328751 Lupinus albus HOM05D007400 ORTHO05D009351 3.8e-06 56.6 150 28.0
Pp3c2_2300 Physcomitrium patens HOM05D007400 ORTHO05D009351 3.8e-06 56.6 140 31.4
unitig_61.g26077 Utricularia gibba HOM05D007400 ORTHO05D009351 3.8e-06 56.6 154 28.6
COL.COLO4_30978 Corchorus olitorius HOM05D000065 ORTHO05D001606 5.0e-06 56.2 125 32.0
CAN.G1222.5 Capsicum annuum HOM05D007400 ORTHO05D009351 6.5e-06 55.8 129 31.0
Phvul.007G223000 Phaseolus vulgaris HOM05D007400 ORTHO05D009351 6.5e-06 55.8 117 30.8
Psat5g167080 Pisum sativum HOM05D007127 ORTHO05D008803 8.5e-06 55.5 58 53.4


User provided reference genes

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