Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 5.0e-129 464.5 250 100.0
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 2.2e-124 449.1 250 96.8
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 2.4e-123 445.7 250 96.0
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 2.0e-109 399.4 250 86.8
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 3.9e-105 385.2 216 95.8
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.1e-94 350.5 219 87.7
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 1.2e-87 327.0 245 73.1
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 1.3e-73 280.4 251 64.9
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 1.8e-62 243.4 241 57.3
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 1.5e-61 240.4 241 56.8
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 2.6e-61 239.6 239 54.8
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 4.9e-60 235.3 238 56.3
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 1.6e-58 230.3 245 52.2
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 3.5e-58 229.2 241 54.8
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 7.9e-58 228.0 245 52.2
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 9.6e-56 221.1 240 50.0
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 1.3e-55 220.7 245 51.0
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 3.7e-55 219.2 241 52.3
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 9.0e-54 214.5 241 50.6
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 1.5e-53 213.8 245 49.4
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 1.0e-52 211.1 245 48.6
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 1.3e-52 210.7 241 50.6
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 3.8e-52 209.1 245 49.4
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 3.8e-52 209.1 241 49.4
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 1.4e-51 207.2 210 53.8
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 5.5e-51 205.3 238 49.6
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 5.5e-51 205.3 241 49.8
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 2.7e-50 203.0 241 49.8
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 2.7e-50 203.0 233 51.5
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 3.6e-50 202.6 241 50.2
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 7.9e-50 201.4 213 54.0
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 7.9e-50 201.4 241 49.8
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 1.3e-49 200.7 242 47.1
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 1.8e-49 200.3 241 47.7
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 6.7e-49 198.4 246 50.4
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 8.7e-49 198.0 246 49.6
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 3.7e-47 192.6 188 59.6
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 1.4e-46 190.7 242 46.3
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 6.9e-46 188.3 241 47.3
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 9.1e-46 188.0 242 47.9
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 2.0e-45 186.8 241 46.5
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 2.6e-45 186.4 201 53.7
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 4.5e-45 185.7 242 45.9
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 1.0e-44 184.5 269 44.6
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 1.0e-44 184.5 258 45.7
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 1.0e-44 184.5 306 41.5
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 1.7e-44 183.7 241 46.9
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 2.9e-44 183.0 241 44.8
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 1.9e-43 180.3 241 45.6
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 3.2e-43 179.5 241 44.0
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 3.2e-43 179.5 226 46.9
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 1.6e-42 177.2 243 43.6
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 2.1e-42 176.8 242 43.8
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 2.7e-42 176.4 246 46.3
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 6.1e-42 175.3 180 55.0
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 6.1e-42 175.3 249 45.4
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 1.4e-41 174.1 241 44.8
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 1.4e-41 174.1 228 46.1
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 3.0e-41 172.9 241 44.4
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 5.1e-41 172.2 241 44.8
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 6.7e-41 171.8 246 44.7
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 6.7e-41 171.8 305 38.7
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 8.8e-41 171.4 241 44.0
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 8.8e-41 171.4 241 46.1
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 2.0e-40 170.2 188 50.5
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 2.0e-40 170.2 241 44.0
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 1.7e-39 167.2 188 51.1
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 2.4e-38 163.3 188 48.9
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 4.1e-38 162.5 244 45.1
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 6.9e-38 161.8 255 42.0
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 6.9e-38 161.8 239 42.3
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 1.2e-37 161.0 212 46.7
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 1.3e-36 157.5 247 42.5
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 1.3e-36 157.5 265 41.1
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 1.7e-36 157.1 255 41.2
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 3.8e-36 156.0 188 46.8
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 2.5e-35 153.3 191 46.6
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 5.5e-35 152.1 241 40.2
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 7.2e-35 151.8 246 39.0
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 5.2e-33 145.6 118 61.0
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 6.7e-33 145.2 240 40.8
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 8.8e-33 144.8 137 57.7
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 2.0e-32 143.7 346 31.8
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 2.0e-32 143.7 125 60.0
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 9.7e-32 141.4 300 36.3
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 5.3e-30 135.6 189 42.9
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 1.6e-29 134.0 201 43.8
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 1.0e-28 131.3 188 44.7
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 1.6e-26 124.0 246 37.4
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 4.7e-26 122.5 232 37.5
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 3.0e-25 119.8 132 52.3
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 6.7e-25 118.6 232 37.1
vmacro02927 Vaccinium macrocarpon HOM05D007204 ORTHO05D008593 2.2e-23 113.6 195 43.1
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 2.8e-23 113.2 232 35.8
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 1.1e-22 111.3 316 31.0
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 4.5e-21 105.9 138 44.2
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 5.0e-20 102.4 137 43.1
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 5.0e-20 102.4 137 43.1
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 4.8e-15 85.9 234 28.6
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 3.1e-14 83.2 152 37.5
TPR.G22099 Trifolium pratense HOM05D007204 ORTHO05D008593 4.0e-09 66.2 130 35.4
Zm00001eb025660 Zea mays HOM05D007204 ORTHO05D008593 6.3e-07 58.9 53 56.6
SMO358G0161 Selaginella moellendorffii HOM05D007204 ORTHO05D008593 7.0e-06 55.5 132 33.3


User provided reference genes

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