Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2340 Fragaria x ananassa HOM05D007447 ORTHO05D009372 1.1e-149 533.5 308 100.0
FvH4_3g08660 Fragaria vesca HOM05D007447 ORTHO05D009372 6.2e-137 491.1 308 88.3
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 1.1e-136 490.3 304 91.8
FAN11G2802 Fragaria x ananassa HOM05D007447 ORTHO05D009372 1.7e-134 483.0 316 88.9
RcHm_v2.0_Chr5g0009131 Rosa chinensis HOM05D007447 ORTHO05D009372 4.3e-122 441.8 298 80.2
MD10G1289400 Malus domestica HOM05D007447 ORTHO05D009372 2.0e-74 283.5 284 58.1
Prupe.3G304000 Prunus persica HOM05D007447 ORTHO05D009372 1.9e-69 266.9 242 62.8
QL05p042219 Quercus lobata HOM05D007447 ORTHO05D009372 7.0e-64 248.4 295 51.2
GSVIVG01021110001 Vitis vinifera HOM05D007447 ORTHO05D009372 3.8e-62 242.7 246 55.3
Atru.chr10.1800 Acer truncatum HOM05D007447 ORTHO05D009372 2.1e-60 236.9 244 54.5
VMungo0540G1135 Vigna mungo HOM05D007447 ORTHO05D009372 3.6e-60 236.1 245 52.7
Gorai.011G030100 Gossypium raimondii HOM05D007447 ORTHO05D009372 4.7e-60 235.7 291 46.0
Thecc.06G181300 Theobroma cacao HOM05D007447 ORTHO05D009372 6.1e-60 235.3 296 48.6
Psat1g202800 Pisum sativum HOM05D007447 ORTHO05D009372 6.7e-59 231.9 285 47.4
Gohir.D10G028300 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.1e-58 231.1 294 45.6
COL.COLO4_31413 Corchorus olitorius HOM05D001455 ORTHO05D001587 2.0e-58 230.3 253 49.4
Dinv40599 Davidia involucrata HOM05D007447 ORTHO05D009372 5.7e-58 228.8 248 52.4
Ciclev10018161m.g Citrus clementina HOM05D007447 ORTHO05D009372 1.7e-57 227.3 219 55.7
Glyma.13G235800 Glycine max HOM05D007447 ORTHO05D009372 1.7e-57 227.3 245 51.8
arahy.Tifrunner.gnm1.ann1.MUCA0D Arachis hypogaea HOM05D007447 ORTHO05D009372 1.6e-55 220.7 250 50.4
PGR042G0911 Punica granatum HOM05D007447 ORTHO05D009372 3.5e-55 219.5 248 48.8
arahy.Tifrunner.gnm1.ann1.45S4HY Arachis hypogaea HOM05D007447 ORTHO05D009372 1.3e-54 217.6 245 50.6
Manes.16G031900 Manihot esculenta HOM05D007447 ORTHO05D009372 2.2e-54 216.9 251 48.6
TAR627G0071 Trochodendron aralioides HOM05D007447 ORTHO05D009372 2.9e-54 216.5 296 43.9
Cfa000525 Carpinus fangiana HOM05D007447 ORTHO05D009372 1.1e-53 214.5 252 50.4
CiPaw.10G052600 Carya illinoinensis HOM05D007447 ORTHO05D009372 1.5e-53 214.2 230 52.2
Phvul.006G182400 Phaseolus vulgaris HOM05D007447 ORTHO05D009372 1.9e-53 213.8 245 48.6
Lj6g0005430 Lotus japonicus HOM05D007447 ORTHO05D009372 2.5e-53 213.4 288 45.5
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 9.4e-53 211.5 246 51.6
CSS0015196 Camellia sinensis var. sinensis HOM05D007447 ORTHO05D009372 6.1e-52 208.8 253 45.1
TWI63G0216 Tripterygium wilfordii HOM05D007447 ORTHO05D009372 2.3e-51 206.8 251 44.6
ClCG03G008020 Citrullus lanatus HOM05D007447 ORTHO05D009372 4.0e-51 206.1 254 45.7
CANSAT35G0297 Cannabis sativa HOM05D007447 ORTHO05D009372 5.2e-51 205.7 247 49.0
CsaV3_1G012550 Cucumis sativus L. HOM05D007447 ORTHO05D009372 1.2e-50 204.5 255 44.3
PSO675G5366 Papaver somniferum HOM05D007447 ORTHO05D009372 2.4e-48 196.8 249 42.6
PSO675G8572 Papaver somniferum HOM05D007447 ORTHO05D009372 2.4e-48 196.8 249 42.6
Nitab4.5_0001955g0160 Nicotiana tabacum HOM05D007447 ORTHO05D009372 1.2e-47 194.5 253 42.7
Medtr2g014440 Medicago truncatula HOM05D007447 ORTHO05D009372 2.7e-47 193.4 245 45.3
Sed0019225 Sechium edule HOM05D007447 ORTHO05D009372 4.5e-47 192.6 252 44.4
Aqoxy1G02279 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 1.7e-46 190.7 292 37.7
Eucgr.E03244 Eucalyptus grandis HOM05D007447 ORTHO05D009372 2.9e-46 189.9 248 44.4
COL.COLO4_14300 Corchorus olitorius HOM05D001061 ORTHO05D006729 3.8e-46 189.5 298 41.3
Nn1g06424 Nelumbo nucifera HOM05D007447 ORTHO05D009372 3.2e-45 186.4 277 41.5
Lalb_Chr18g0059391 Lupinus albus HOM05D007447 ORTHO05D009372 5.5e-45 185.7 245 44.9
Solyc02g077690.4 Solanum lycopersicum HOM05D007447 ORTHO05D009372 5.5e-45 185.7 253 41.5
Gohir.A05G159100 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.2e-44 184.5 249 43.4
Cpa.g.sc27.6 Carica papaya HOM05D007447 ORTHO05D009372 8.8e-43 178.3 235 43.4
MSTRG.14713 Avicennia marina HOM05D007447 ORTHO05D009372 3.4e-42 176.4 246 41.1
Actinidia07600 Actinidia chinensis HOM05D007447 ORTHO05D009372 8.3e-41 171.8 193 49.2
unitig_61.g26088 Utricularia gibba HOM05D007447 ORTHO05D009372 2.4e-40 170.2 246 38.6
DCAR_008005 Daucus carota HOM05D007447 ORTHO05D009372 2.7e-39 166.8 237 44.7
TPR.G11645 Trifolium pratense HOM05D007447 ORTHO05D009372 2.7e-39 166.8 182 50.0
Hma1.2p1_0558F.1_g178510 Hydrangea macrophylla HOM05D007447 ORTHO05D009372 5.9e-39 165.6 178 52.2
Ca_00359_v3 Cicer arietinum L. HOM05D007447 ORTHO05D009372 1.7e-38 164.1 177 50.3
Thhalv10008438m.g Eutrema salsugineum HOM05D007447 ORTHO05D009372 5.0e-38 162.5 253 36.8
Migut.H01471 Erythranthe guttata HOM05D007447 ORTHO05D009372 5.5e-37 159.1 250 39.6
Duzib160G0617 Durio zibethinus HOM05D007447 ORTHO05D009372 9.5e-37 158.3 296 37.5
Aqoxy193s001 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 3.6e-36 156.4 194 43.3
ECA248G3772 Erigeron canadensis HOM05D007447 ORTHO05D009372 6.1e-36 155.6 243 38.7
vmacro15930 Vaccinium macrocarpon HOM05D007447 ORTHO05D009372 2.3e-35 153.7 280 36.4
AL1G42040 Arabidopsis lyrata HOM05D007447 ORTHO05D009372 5.2e-35 152.5 253 36.8
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 1.2e-34 151.4 219 43.8
CAN.G529.53 Capsicum annuum HOM05D007447 ORTHO05D009372 2.0e-34 150.6 188 42.6
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 4.4e-34 149.4 274 36.5
Carub.0001s2689 Capsella rubella HOM05D007447 ORTHO05D009372 7.5e-34 148.7 252 35.3
AT1G28410 Arabidopsis thaliana HOM05D007447 ORTHO05D009372 1.3e-33 147.9 253 36.0
Hund23805 Selenicereus undatus HOM05D007447 ORTHO05D009372 2.2e-33 147.1 238 37.8
HanXRQChr08g0213981 Helianthus annuus HOM05D007447 ORTHO05D009372 6.3e-33 145.6 242 39.3
Sopen02g022590 Solanum pennellii HOM05D007447 ORTHO05D009372 7.0e-32 142.1 253 35.6
CARHR027920 Cardamine hirsuta HOM05D007447 ORTHO05D009372 9.2e-32 141.7 253 34.0
Sp1g24690 Schrenkiella parvula HOM05D007447 ORTHO05D009372 1.2e-31 141.4 225 36.9
THA.LOC104814436 Tarenaya hassleriana HOM05D007447 ORTHO05D009372 7.8e-31 138.7 251 35.1
Oeu012152.1 Olea europaea HOM05D007447 ORTHO05D009372 1.0e-30 138.3 156 48.7
Gohir.A09G104400 Gossypium hirsutum HOM05D007447 ORTHO05D009372 2.3e-30 137.1 207 39.6
Gohir.A10G027900 Gossypium hirsutum HOM05D007447 ORTHO05D009372 2.9e-30 136.7 154 48.7
SalBow7G4252 Salvia bowleyana HOM05D007447 ORTHO05D009372 6.6e-30 135.6 204 39.7
SalBow7G4859 Salvia bowleyana HOM05D007447 ORTHO05D009372 6.6e-30 135.6 204 39.7
Rhsim02G0134600 Rhododendron simsii HOM05D007447 ORTHO05D009372 1.1e-29 134.8 247 38.1
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 1.1e-29 134.8 239 35.6
BraA09t39273Z Brassica rapa HOM05D007447 ORTHO05D009372 2.5e-29 133.7 216 36.6
A09p37630 Brassica napus HOM05D007447 ORTHO05D009372 3.3e-29 133.3 216 36.6
C05p27420 Brassica napus HOM05D007447 ORTHO05D009372 5.6e-29 132.5 216 35.6
Cc02_g13820 Coffea canephora HOM05D007447 ORTHO05D009372 5.6e-29 132.5 211 38.9
Ah.09g237570 Amaranthus hybridus HOM05D007447 ORTHO05D009372 7.3e-29 132.1 238 34.9
MELO3C000075.2 Cucumis melo HOM05D007447 ORTHO05D009372 9.5e-29 131.7 138 48.6
Peaxi162Scf00926g00028 Petunia axillaris HOM05D007447 ORTHO05D009372 9.5e-29 131.7 255 34.5
BolC5t31458H Brassica oleracea HOM05D007447 ORTHO05D009372 1.6e-28 131.0 214 35.5
BcaC05g26860 Brassica carinata HOM05D007447 ORTHO05D009372 4.0e-27 126.3 220 35.0
EL10Ac8g20436 Beta vulgaris HOM05D007447 ORTHO05D009372 2.6e-26 123.6 244 32.8
AUR62014866 Chenopodium quinoa HOM05D007447 ORTHO05D009372 5.8e-26 122.5 293 31.7
MBI06_g04396_MAGBIO Magnolia biondii HOM05D007447 ORTHO05D009372 8.6e-22 108.6 248 30.6
Lsat_1_v5_gn_1_120761 Lactuca sativa HOM05D007447 ORTHO05D009372 2.3e-19 100.5 116 49.1
Os02g0305600 Oryza sativa ssp. japonica HOM05D007447 ORTHO05D009372 2.2e-17 94.0 306 24.8
Gohir.A02G158500 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.4e-16 91.3 70 64.3
Gohir.A01G124600 Gossypium hirsutum HOM05D007447 ORTHO05D009372 4.1e-16 89.7 71 62.0
Gohir.A01G131222 Gossypium hirsutum HOM05D007447 ORTHO05D009372 4.1e-16 89.7 71 62.0
Potri.004G048500 Populus trichocarpa HOM05D007447 ORTHO05D009372 1.9e-13 80.9 119 39.5
CDE04G0034 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 2.5e-13 80.5 110 40.9
ATR0730G049 Amborella trichopoda HOM05D007447 ORTHO05D009372 2.1e-12 77.4 212 30.2
AUR62031072 Chenopodium quinoa HOM05D007447 ORTHO05D009372 1.2e-10 71.6 218 28.0
Zm00001eb203200 Zea mays HOM05D007447 ORTHO05D009372 3.7e-09 66.6 305 23.0
MELO3C027350.2 Cucumis melo HOM05D007447 ORTHO05D009372 4.1e-08 63.2 84 42.9
HPP92_005282 Vanilla planifolia HOM05D007447 ORTHO05D009372 7.1e-08 62.4 140 32.9
Prupe.1G318200 Prunus persica HOM05D007447 ORTHO05D009372 1.3e-06 58.2 124 39.5


User provided reference genes

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