Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2322 Fragaria x ananassa HOM05D007160 ORTHO05D005331 1.5e-112 410.2 330 100.0
FAN21G2372 Fragaria x ananassa HOM05D007160 ORTHO05D005331 1.3e-100 370.5 339 90.3
FAN11G0877 Fragaria x ananassa HOM05D007160 ORTHO05D005331 7.7e-77 291.6 306 89.9
FvH4_3g08671 Fragaria vesca HOM05D007160 ORTHO05D005331 6.1e-74 282.0 306 79.4
Cfa000523 Carpinus fangiana HOM05D007160 ORTHO05D005331 1.1e-17 95.1 181 38.7
QL05p042103 Quercus lobata HOM05D007160 ORTHO05D005331 7.6e-16 89.0 187 42.2
QL05p042154 Quercus lobata HOM05D007160 ORTHO05D005331 7.6e-16 89.0 187 42.2
Duzib192G1060 Durio zibethinus HOM05D007160 ORTHO05D005331 1.1e-14 85.1 188 36.7
Prupe.4G052000 Prunus persica HOM05D007160 ORTHO05D005331 2.4e-14 84.0 93 61.3
Duzib235G1074 Durio zibethinus HOM05D007160 ORTHO05D005331 7.1e-14 82.4 117 47.0
CiPaw.10G052400 Carya illinoinensis HOM05D007160 ORTHO05D005331 9.2e-14 82.0 187 40.1
Ca_00358_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 1.0e-12 78.6 88 47.7
Ca_30973_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 1.0e-12 78.6 88 47.7
Glyma.13G236100 Glycine max HOM05D007160 ORTHO05D005331 1.0e-12 78.6 157 51.0
Glyma.15G077600 Glycine max HOM05D007160 ORTHO05D005331 1.0e-12 78.6 89 50.6
Prupe.4G052200 Prunus persica HOM05D007160 ORTHO05D005331 1.3e-12 78.2 321 44.2
Potri.004G048301 Populus trichocarpa HOM05D007160 ORTHO05D005331 2.3e-12 77.4 109 46.8
Duzib160G0215 Durio zibethinus HOM05D007160 ORTHO05D005331 3.9e-12 76.6 89 52.8
VMungo0540G2483 Vigna mungo HOM05D007160 ORTHO05D005331 3.9e-12 76.6 156 37.2
Gohir.A10G027800 Gossypium hirsutum HOM05D007160 ORTHO05D005331 5.1e-12 76.3 94 51.1
CiPaw.09G063200 Carya illinoinensis HOM05D007160 ORTHO05D005331 6.6e-12 75.9 199 41.7
Gohir.D10G028200 Gossypium hirsutum HOM05D007160 ORTHO05D005331 8.6e-12 75.5 168 38.1
Phvul.002G232100 Phaseolus vulgaris HOM05D007160 ORTHO05D005331 1.1e-11 75.1 83 49.4
Sed0008189 Sechium edule HOM05D007160 ORTHO05D005331 1.5e-11 74.7 89 51.7
Glyma.13G175300 Glycine max HOM05D007160 ORTHO05D005331 1.9e-11 74.3 82 51.2
Medtr4g088385 Medicago truncatula HOM05D007160 ORTHO05D005331 1.9e-11 74.3 170 35.9
VMungo0251G1795 Vigna mungo HOM05D007160 ORTHO05D005331 1.9e-11 74.3 153 38.6
Dinv17351 Davidia involucrata HOM05D007160 ORTHO05D005331 3.3e-11 73.6 138 38.4
Glyma.07G201100 Glycine max HOM05D007160 ORTHO05D005331 3.3e-11 73.6 153 45.1
Oeu014779.1 Olea europaea HOM05D007160 ORTHO05D005331 4.3e-11 73.2 94 48.9
Gorai.011G030000 Gossypium raimondii HOM05D007160 ORTHO05D005331 5.6e-11 72.8 168 36.9
MD05G1310400 Malus domestica HOM05D007160 ORTHO05D005331 5.6e-11 72.8 350 36.0
Sabra04G0030300 Salix brachista HOM05D007160 ORTHO05D005331 5.6e-11 72.8 109 45.9
ClCG01G023230 Citrullus lanatus HOM05D007160 ORTHO05D005331 9.6e-11 72.0 189 36.0
Lj6g0014856 Lotus japonicus HOM05D007160 ORTHO05D005331 9.6e-11 72.0 145 39.3
Rhsim02G0134300 Rhododendron simsii HOM05D007160 ORTHO05D005331 9.6e-11 72.0 186 40.9
MD10G1289700 Malus domestica HOM05D007160 ORTHO05D005331 2.1e-10 70.9 313 43.5
Manes.17G049000 Manihot esculenta HOM05D007160 ORTHO05D005331 2.8e-10 70.5 98 45.9
TWI63G1823 Tripterygium wilfordii HOM05D007160 ORTHO05D005331 2.8e-10 70.5 91 48.4
DCAR_008006 Daucus carota HOM05D007160 ORTHO05D005331 3.6e-10 70.1 163 39.3
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 4.7e-10 69.7 55 63.6
Phvul.006G182700 Phaseolus vulgaris HOM05D007160 ORTHO05D005331 4.7e-10 69.7 170 38.2
Actinidia16571 Actinidia chinensis HOM05D007160 ORTHO05D005331 6.2e-10 69.3 88 48.9
Lj4g0028244 Lotus japonicus HOM05D007160 ORTHO05D005331 6.2e-10 69.3 188 44.1
Peaxi162Scf01018g00012 Petunia axillaris HOM05D007160 ORTHO05D005331 6.2e-10 69.3 104 44.2
Thecc.06G181500 Theobroma cacao HOM05D007160 ORTHO05D005331 1.1e-09 68.6 187 34.2
Lalb_Chr20g0121591 Lupinus albus HOM05D007160 ORTHO05D005331 3.1e-09 67.0 146 37.0
Medtr2g014400 Medicago truncatula HOM05D007160 ORTHO05D005331 5.2e-09 66.2 165 36.4
Nitab4.5_0000516g0060 Nicotiana tabacum HOM05D007160 ORTHO05D005331 6.8e-09 65.9 100 50.0
Nitab4.5_0001375g0150 Nicotiana tabacum HOM05D007160 ORTHO05D005331 6.8e-09 65.9 100 50.0
Ca_18588_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 8.9e-09 65.5 141 36.2
TAR627G1090 Trochodendron aralioides HOM05D018497 ORTHO05D005331 8.9e-09 65.5 171 35.1
Cc02_g13790 Coffea canephora HOM05D007160 ORTHO05D005331 1.2e-08 65.1 167 32.9
Nitab4.5_0001375g0120 Nicotiana tabacum HOM05D007160 ORTHO05D005331 1.2e-08 65.1 89 49.4
Haze_06386 Corylus avellana HOM05D007160 ORTHO05D005331 1.5e-08 64.7 84 48.8
CANSAT35G1941 Cannabis sativa HOM05D007160 ORTHO05D005331 2.0e-08 64.3 104 45.2
MELO3C007263.2 Cucumis melo HOM05D007160 ORTHO05D005331 2.0e-08 64.3 105 38.1
DCAR_004048 Daucus carota HOM05D007160 ORTHO05D005331 2.0e-08 64.3 151 38.4
Nitab4.5_0000516g0070 Nicotiana tabacum HOM05D007160 ORTHO05D005331 2.6e-08 63.9 89 48.3
Potri.011G057500 Populus trichocarpa HOM05D007160 ORTHO05D005331 2.6e-08 63.9 178 40.4
Manes.16G031700 Manihot esculenta HOM05D007160 ORTHO05D005331 3.4e-08 63.5 164 37.8
Sabra11G0039600 Salix brachista HOM05D007160 ORTHO05D005331 3.4e-08 63.5 107 41.1
Nitab4.5_0001375g0140 Nicotiana tabacum HOM05D007160 ORTHO05D005331 5.8e-08 62.8 98 48.0
EL10Ac8g20435 Beta vulgaris HOM05D007160 ORTHO05D005331 7.6e-08 62.4 104 44.2
TPR.G19911 Trifolium pratense HOM05D007160 ORTHO05D005331 7.6e-08 62.4 166 34.9
Nitab4.5_0004359g0050 Nicotiana tabacum HOM05D007160 ORTHO05D005331 1.3e-07 61.6 98 42.9
SalBow8G5472 Salvia bowleyana HOM05D007160 ORTHO05D005331 1.7e-07 61.2 84 46.4
Psat1g203080 Pisum sativum HOM05D007160 ORTHO05D005331 2.2e-07 60.8 154 36.4
SalBow8G2878 Salvia bowleyana HOM05D007160 ORTHO05D005331 2.9e-07 60.5 83 47.0
SalBow8G4606 Salvia bowleyana HOM05D007160 ORTHO05D005331 2.9e-07 60.5 83 47.0
TAR629G2975 Trochodendron aralioides HOM05D018497 ORTHO05D021348 2.9e-07 60.5 161 35.4
Aqoxy4G00632 Aquilegia oxysepala HOM05D018497 ORTHO05D021348 4.9e-07 59.7 174 36.8
arahy.Tifrunner.gnm1.ann1.704E4A Arachis hypogaea HOM05D007160 ORTHO05D005331 4.9e-07 59.7 169 39.1
Hma1.2p1_0558F.1_g178530 Hydrangea macrophylla HOM05D007160 ORTHO05D005331 6.4e-07 59.3 98 46.9
TAR624G0339 Trochodendron aralioides HOM05D007160 ORTHO05D005331 6.4e-07 59.3 175 34.9
Eucgr.E03246 Eucalyptus grandis HOM05D049980 ORTHO05D005331 8.4e-07 58.9 110 39.1
PGSC0003DMG400022807 Solanum tuberosum HOM05D007160 ORTHO05D005331 8.4e-07 58.9 81 46.9
MSTRG.13207 Avicennia marina HOM05D007160 ORTHO05D005331 1.4e-06 58.2 93 40.9
Nitab4.5_0000516g0090 Nicotiana tabacum HOM05D007160 ORTHO05D005331 1.4e-06 58.2 94 47.9
BcaB03g12106 Brassica carinata HOM05D009159 ORTHO05D005331 1.9e-06 57.8 89 43.8
CAN.G529.50 Capsicum annuum HOM05D007160 ORTHO05D005331 1.9e-06 57.8 88 45.5
Nitab4.5_0003341g0030 Nicotiana tabacum HOM05D007160 ORTHO05D005331 1.9e-06 57.8 80 45.0
Medtr2g090660 Medicago truncatula HOM05D008876 ORTHO05D010747 2.4e-06 57.4 193 34.2
CsaV3_6G050380 Cucumis sativus L. HOM05D007160 ORTHO05D005331 3.2e-06 57.0 110 38.2
ECA236G4287 Erigeron canadensis HOM05D007160 ORTHO05D005331 3.2e-06 57.0 91 40.7
Aa31LG6G10320 Aethionema arabicum HOM05D009159 ORTHO05D005331 4.2e-06 56.6 105 40.0
arahy.Tifrunner.gnm1.ann1.AUV6LD Arachis hypogaea HOM05D007160 ORTHO05D005331 4.2e-06 56.6 162 40.1
C03p75110 Brassica napus HOM05D009159 ORTHO05D005331 5.4e-06 56.2 86 41.9
Cpa.g.sc27.8 Carica papaya HOM05D007160 ORTHO05D005331 5.4e-06 56.2 77 40.3
PGSC0003DMG400031775 Solanum tuberosum HOM05D007160 ORTHO05D005331 5.4e-06 56.2 81 48.1
Peaxi162Scf00926g00031 Petunia axillaris HOM05D007160 ORTHO05D005331 7.1e-06 55.8 77 46.8


User provided reference genes

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