Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2301 Fragaria x ananassa HOM05D005012 ORTHO05D005886 0.0e+00 1114.4 615 100.0
FAN26G2139 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.3e-175 620.5 525 70.5
FAN10G0147 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.3e-174 615.9 448 79.0
FAN20G1519 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.8e-173 612.8 483 72.9
FAN16G2537 Fragaria x ananassa HOM05D005012 ORTHO05D005886 9.3e-161 571.2 397 76.8
FAN15G1928 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.1e-153 547.7 451 72.7
FAN13G1160 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.4e-153 547.4 402 76.6
FAN12G0378 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.3e-151 540.0 464 69.2
FAN04G2305 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.0e-138 498.0 300 85.0
FvH4_1g28181 Fragaria vesca HOM05D005012 ORTHO05D005886 9.4e-137 491.5 478 62.8
FAN26G2799 Fragaria x ananassa HOM05D005012 ORTHO05D005886 6.7e-135 485.3 487 62.6
FAN19G1173 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.1e-132 478.0 343 77.0
FAN25G0106 Fragaria x ananassa HOM05D005012 ORTHO05D005886 5.2e-119 432.6 368 64.9
FAN04G2636 Fragaria x ananassa HOM05D005012 ORTHO05D005886 3.4e-118 429.9 367 64.9
FAN04G2098 Fragaria x ananassa HOM05D005012 ORTHO05D005886 9.8e-118 428.3 343 66.8
FvH4_1g28940 Fragaria vesca HOM05D005012 ORTHO05D005886 6.1e-112 409.1 287 77.4
FAN22G1849 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.8e-111 407.5 320 70.3
FvH4_1g29802 Fragaria vesca HOM05D005012 ORTHO05D005886 3.3e-105 386.7 224 88.4
FAN15G1881 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.3e-98 364.0 287 68.6
FAN04G2537 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.5e-97 361.3 287 68.3
FAN07G2178 Fragaria x ananassa HOM05D005012 ORTHO05D005886 4.7e-96 356.3 287 67.9
FvH4_6g21851 Fragaria vesca HOM05D005012 ORTHO05D005886 4.3e-89 333.2 183 91.8
FvH4_5g37421 Fragaria vesca HOM05D005012 ORTHO05D005886 8.1e-80 302.4 171 88.9
FAN04G0818 Fragaria x ananassa HOM05D005012 ORTHO05D005886 8.1e-80 302.4 228 71.9
FAN19G1169 Fragaria x ananassa HOM05D005012 ORTHO05D005886 5.3e-79 299.7 183 84.7
FvH4_4g09832 Fragaria vesca HOM05D005012 ORTHO05D005886 9.9e-78 295.4 294 64.3
RcHm_v2.0_Chr6g0273901 Rosa chinensis HOM05D005012 ORTHO05D005886 2.3e-74 284.3 340 50.6
FAN06G3934 Fragaria x ananassa HOM05D005012 ORTHO05D005886 4.8e-64 250.0 185 70.8
FAN11G2763 Fragaria x ananassa HOM05D005012 ORTHO05D008319 2.8e-56 224.2 274 49.3
FAN17G1574 Fragaria x ananassa HOM05D005012 ORTHO05D005886 5.3e-55 219.9 291 43.0
FvH4_6g37930 Fragaria vesca HOM05D005012 ORTHO05D005886 1.0e-53 215.7 340 43.5
FvH4_3g22860 Fragaria vesca HOM05D005012 ORTHO05D005886 1.3e-53 215.3 329 43.5
FvH4_3g03321 Fragaria vesca HOM05D005012 ORTHO05D005886 4.6e-51 206.8 117 92.3
FAN08G2726 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.3e-50 204.5 153 69.9
TWI79G1319 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 8.7e-50 202.6 353 37.7
FvH4_3g22003 Fragaria vesca HOM05D005012 ORTHO05D005886 1.1e-47 195.7 191 58.1
FAN04G0958 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.4e-47 194.5 150 69.3
Rhsim01G0079300 Rhododendron simsii HOM05D005012 ORTHO05D005886 5.9e-46 189.9 295 36.6
RcHm_v2.0_Chr7g0222641 Rosa chinensis HOM05D005012 ORTHO05D005886 1.0e-45 189.1 319 40.1
CSS0045334 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.8e-45 187.2 357 34.5
CSS0037011 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.5e-44 184.5 258 38.0
Rhsim01G0158900 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.2e-44 184.1 295 35.9
Rhsim01G0079900 Rhododendron simsii HOM05D005012 ORTHO05D005886 4.2e-44 183.7 292 36.6
CSS0027060 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.7e-43 181.0 344 33.7
CSS0001231 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.6e-43 180.6 357 33.9
CSS0028601 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.6e-43 180.3 274 36.9
CSS0033025 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 7.9e-43 179.5 340 34.4
CSS0033950 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 7.9e-43 179.5 340 34.4
CSS0041437 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 7.9e-43 179.5 340 34.4
CSS0003542 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.0e-42 179.1 340 34.1
CSS0041327 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.4e-42 178.7 340 33.5
CSS0000891 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.8e-42 178.3 340 34.4
CSS0044969 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.3e-41 174.1 359 33.7
CSS0004182 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 7.4e-41 172.9 351 33.3
FvH4_4g09791 Fragaria vesca HOM05D000107 ORTHO05D000062 1.3e-40 172.2 148 68.2
CSS0009064 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 8.2e-40 169.5 258 37.6
CSS0040160 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.9e-36 158.3 288 34.7
FvH4_5g37430 Fragaria vesca HOM05D000107 ORTHO05D000062 2.1e-35 154.8 146 65.8
CSS0046119 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.7e-35 154.5 275 34.9
CSS0005185 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.7e-35 153.7 288 34.0
CSS0013618 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 6.1e-35 153.3 286 34.6
CSS0008214 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 7.9e-35 152.9 275 34.5
CSS0042015 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.8e-34 151.8 288 33.7
CSS0018539 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.9e-34 150.6 277 35.7
CSS0007522 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 5.1e-34 150.2 275 34.2
CSS0001339 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.3e-33 147.5 277 35.0
FAN08G1587 Fragaria x ananassa HOM05D005012 ORTHO05D005886 5.7e-33 146.7 314 34.7
FvH4_4g08110 Fragaria vesca HOM05D005012 ORTHO05D005886 2.6e-30 137.9 105 73.3
FAN11G1235 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.6e-30 137.9 156 55.8
CSS0016088 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.5e-28 131.3 346 30.6
FvH4_4g23330 Fragaria vesca HOM05D005012 ORTHO05D005886 2.5e-28 131.3 71 91.5
vmacro22380 Vaccinium macrocarpon HOM05D005012 ORTHO05D005886 3.2e-28 131.0 259 30.5
CSS0010423 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.0e-26 125.9 383 29.8
Rhsim09G0006300 Rhododendron simsii HOM05D005012 ORTHO05D005886 2.3e-26 124.8 269 30.5
Rhsim07G0133200 Rhododendron simsii HOM05D005012 ORTHO05D005886 3.3e-25 120.9 347 28.2
CSS0022677 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.2e-21 108.2 191 35.1
CSS0012868 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.9e-21 107.8 191 35.1
FAN28G1702 Fragaria x ananassa HOM05D005012 ORTHO05D005886 6.5e-21 106.7 114 50.0
TWI77G0909 Tripterygium wilfordii HOM05D005012 ORTHO05D005886 1.9e-20 105.1 204 34.3
CSS0028764 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.5e-20 104.8 257 30.0
RcHm_v2.0_Chr1g0341871 Rosa chinensis HOM05D005012 ORTHO05D005886 3.2e-20 104.4 117 50.4
CSS0019574 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.2e-20 104.0 191 34.6
FAN26G1690 Fragaria x ananassa HOM05D005012 ORTHO05D005886 4.2e-20 104.0 82 61.0
CSS0038015 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.0e-18 97.4 180 33.9
Rhsim07G0167600 Rhododendron simsii HOM05D005012 ORTHO05D005886 4.0e-18 97.4 184 33.2
FAN17G1975 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.5e-17 95.5 169 36.1
CSS0035704 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.6e-17 94.7 195 35.9
Rhsim05G0112900 Rhododendron simsii HOM05D005012 ORTHO05D005886 3.4e-17 94.4 277 28.5
RcHm_v2.0_Chr3g0475981 Rosa chinensis HOM05D005012 ORTHO05D005886 9.7e-17 92.8 94 48.9
CSS0007280 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.3e-16 92.4 192 34.4
CSS0040728 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.7e-16 90.9 192 35.9
CSS0030618 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 8.3e-16 89.7 192 34.4
Atru.chr3.1415 Acer truncatum HOM05D005012 ORTHO05D005886 5.3e-15 87.0 269 28.6
FAN19G0357 Fragaria x ananassa HOM05D012792 ORTHO05D005886 9.1e-15 86.3 67 85.1
FvH4_2g06731 Fragaria vesca HOM05D000003 ORTHO05D020649 1.6e-14 85.5 147 38.8
Rhsim09G0115800 Rhododendron simsii HOM05D005012 ORTHO05D005886 1.0e-13 82.8 160 34.4
FAN05G1721 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.3e-13 82.4 133 40.6
FAN07G1674 Fragaria x ananassa HOM05D001975 ORTHO05D013113 2.2e-13 81.6 80 57.5
FAN19G0671 Fragaria x ananassa HOM05D005012 ORTHO05D013113 5.0e-13 80.5 80 56.2
CSS0019248 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.9e-12 78.6 117 33.3
CSS0022576 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.9e-12 78.6 107 40.2
FvH4_3g32806 Fragaria vesca HOM05D000617 ORTHO05D000478 2.5e-12 78.2 39 94.9
FvH4_6g30440 Fragaria vesca HOM05D000617 ORTHO05D000478 2.5e-12 78.2 39 94.9
FAN18G1592 Fragaria x ananassa HOM05D000617 ORTHO05D000478 2.5e-12 78.2 39 94.9
FvH4_5g25220 Fragaria vesca HOM05D000617 ORTHO05D000478 4.2e-12 77.4 70 60.0
FAN04G3247 Fragaria x ananassa HOM05D012792 ORTHO05D005886 4.2e-12 77.4 38 97.4
RcHm_v2.0_Chr3g0486471 Rosa chinensis HOM05D000003 ORTHO05D000022 4.2e-12 77.4 171 35.7
FvH4_5g32340 Fragaria vesca HOM05D000617 ORTHO05D000478 7.2e-12 76.6 39 92.3
FvH4_5g34262 Fragaria vesca HOM05D000003 ORTHO05D000022 1.6e-11 75.5 60 61.7
Rhsim05G0024300 Rhododendron simsii HOM05D005012 ORTHO05D005886 1.6e-11 75.5 123 30.9
Rhsim05G0034600 Rhododendron simsii HOM05D005012 ORTHO05D005886 1.6e-11 75.5 123 30.9
FvH4_6g46881 Fragaria vesca HOM05D000003 ORTHO05D000022 2.1e-11 75.1 60 61.7
CSS0029998 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.7e-11 74.7 105 41.0
FAN05G4851 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.7e-11 74.7 40 92.5
Atru.chr6.1842 Acer truncatum HOM05D005012 ORTHO05D005886 4.7e-11 73.9 178 29.8
CSS0013518 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.7e-11 73.9 105 39.0
RcHm_v2.0_Chr3g0492911 Rosa chinensis HOM05D008564 ORTHO05D013877 4.7e-11 73.9 59 55.9
FAN14G5316 Fragaria x ananassa HOM05D000617 ORTHO05D000478 6.1e-11 73.6 39 89.7
FAN12G1890 Fragaria x ananassa HOM05D001975 ORTHO05D002436 8.0e-11 73.2 80 55.0
FAN03G2808 Fragaria x ananassa HOM05D008564 ORTHO05D013877 1.0e-10 72.8 53 69.8
FAN18G2703 Fragaria x ananassa HOM05D000617 ORTHO05D021539 1.4e-10 72.4 40 85.0
FvH4_2g12061 Fragaria vesca HOM05D000003 ORTHO05D000022 1.8e-10 72.0 60 60.0
CSS0018351 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.3e-10 71.6 105 40.0
RcHm_v2.0_Chr5g0053531 Rosa chinensis HOM05D000003 ORTHO05D000004 2.3e-10 71.6 59 54.2
FvH4_6g22855 Fragaria vesca HOM05D005012 ORTHO05D005886 3.0e-10 71.2 39 89.7
FAN19G3101 Fragaria x ananassa HOM05D008564 ORTHO05D013877 6.8e-10 70.1 60 58.3
Rhsim01G0081500 Rhododendron simsii HOM05D005012 ORTHO05D005886 8.8e-10 69.7 175 32.0
Prupe.2G006600 Prunus persica HOM05D005012 ORTHO05D000385 1.2e-09 69.3 222 27.9
Rhsim07G0081300 Rhododendron simsii HOM05D000074 ORTHO05D002343 1.2e-09 69.3 78 44.9
RcHm_v2.0_Chr7g0220741 Rosa chinensis HOM05D005012 ORTHO05D005886 1.2e-09 69.3 104 43.3
FAN17G1129 Fragaria x ananassa HOM05D001160 ORTHO05D013113 1.5e-09 68.9 39 84.6
RcHm_v2.0_Chr5g0068021 Rosa chinensis HOM05D005012 ORTHO05D050742 2.6e-09 68.2 82 53.7
RcHm_v2.0_Chr6g0281481 Rosa chinensis HOM05D005012 ORTHO05D050742 2.6e-09 68.2 82 53.7
FAN06G3618 Fragaria x ananassa HOM05D008564 ORTHO05D013877 3.4e-09 67.8 58 55.2
FAN19G0085 Fragaria x ananassa HOM05D008564 ORTHO05D013877 4.4e-09 67.4 57 56.1
CSS0042621 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 5.7e-09 67.0 128 32.8
FvH4_4g10141 Fragaria vesca HOM05D000003 ORTHO05D013877 7.5e-09 66.6 67 53.7
FAN06G1843 Fragaria x ananassa HOM05D000230 ORTHO05D013113 7.5e-09 66.6 105 41.9
RcHm_v2.0_Chr2g0138651 Rosa chinensis HOM05D005012 ORTHO05D005886 9.8e-09 66.2 105 39.0
CSS0048721 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.7e-08 65.5 107 35.5
FvH4_2g09413 Fragaria vesca HOM05D000003 ORTHO05D000022 1.7e-08 65.5 59 57.6
FvH4_3g36953 Fragaria vesca HOM05D000003 ORTHO05D000022 2.2e-08 65.1 61 59.0
FAN16G2320 Fragaria x ananassa HOM05D000003 ORTHO05D000022 2.2e-08 65.1 86 47.7
FAN17G2412 Fragaria x ananassa HOM05D000003 ORTHO05D011454 2.2e-08 65.1 51 66.7
FAN18G0940 Fragaria x ananassa HOM05D008564 ORTHO05D010893 2.2e-08 65.1 52 63.5
FAN10G2941 Fragaria x ananassa HOM05D005012 ORTHO05D013113 2.8e-08 64.7 40 77.5
RcHm_v2.0_Chr1g0346721 Rosa chinensis HOM05D005012 ORTHO05D005886 2.8e-08 64.7 120 39.2
CSS0002487 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.7e-08 64.3 128 31.2
CSS0012893 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.7e-08 64.3 128 31.2
CSS0020953 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.7e-08 64.3 128 31.2
CSS0015098 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 4.8e-08 63.9 313 24.0
CSS0032614 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.8e-08 63.9 129 31.0
FAN09G0205 Fragaria x ananassa HOM05D008564 ORTHO05D010893 4.8e-08 63.9 64 50.0
CSS0037492 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 6.3e-08 63.5 109 37.6
FvH4_4g11162 Fragaria vesca HOM05D000003 ORTHO05D013877 6.3e-08 63.5 66 53.0
FAN07G2751 Fragaria x ananassa HOM05D008564 ORTHO05D013877 6.3e-08 63.5 47 66.0
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 8.3e-08 63.2 252 23.4
FAN09G4767 Fragaria x ananassa HOM05D008564 ORTHO05D013877 8.3e-08 63.2 63 52.4
FAN21G1750 Fragaria x ananassa HOM05D008564 ORTHO05D000215 1.8e-07 62.0 48 64.6
RcHm_v2.0_Chr4g0416921 Rosa chinensis HOM05D005012 ORTHO05D005886 1.8e-07 62.0 48 52.1
RcHm_v2.0_Chr6g0306091 Rosa chinensis HOM05D020638 ORTHO05D015199 1.8e-07 62.0 153 30.1
RcHm_v2.0_Chr7g0200931 Rosa chinensis HOM05D000003 ORTHO05D000022 2.4e-07 61.6 54 53.7
CSS0007177 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.1e-07 61.2 107 32.7
Nitab4.5_0010535g0040 Nicotiana tabacum HOM05D009290 ORTHO05D009597 3.1e-07 61.2 210 27.6
vmacro03774 Vaccinium macrocarpon HOM05D005012 ORTHO05D005886 4.1e-07 60.8 171 27.5
FAN18G2039 Fragaria x ananassa HOM05D000617 ORTHO05D000478 5.4e-07 60.5 64 56.2
RcHm_v2.0_Chr1g0382581 Rosa chinensis HOM05D000003 ORTHO05D000022 5.4e-07 60.5 52 57.7
FAN14G0420 Fragaria x ananassa HOM05D005012 ORTHO05D005886 7.0e-07 60.1 63 44.4
Nitab4.5_0000111g0060 Nicotiana tabacum HOM05D008455 ORTHO05D009597 7.0e-07 60.1 176 29.0
FvH4_6g38710 Fragaria vesca HOM05D008209 ORTHO05D010322 9.1e-07 59.7 63 44.4
FAN26G0757 Fragaria x ananassa HOM05D000356 ORTHO05D000265 9.1e-07 59.7 66 48.5
RcHm_v2.0_Chr2g0127141 Rosa chinensis HOM05D000003 ORTHO05D000022 9.1e-07 59.7 163 30.7
RcHm_v2.0_Chr7g0230481 Rosa chinensis HOM05D005012 ORTHO05D005886 1.2e-06 59.3 35 77.1
CSS0034991 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.6e-06 58.9 79 39.2
FAN18G0418 Fragaria x ananassa HOM05D000003 ORTHO05D000022 1.6e-06 58.9 59 52.5
FAN14G2173 Fragaria x ananassa HOM05D000031 ORTHO05D013877 2.0e-06 58.5 46 63.0
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 3.5e-06 57.8 53 56.6
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 3.5e-06 57.8 52 55.8
FvH4_2g38351 Fragaria vesca HOM05D008564 ORTHO05D013877 5.9e-06 57.0 53 52.8


User provided reference genes

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