Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.2e-214 748.8 406 100.0
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.6e-209 731.5 406 94.8
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 8.2e-206 720.3 406 95.8
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 1.7e-182 642.9 406 88.7
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.4e-181 639.0 406 88.2
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 2.2e-174 615.9 404 81.7
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 3.3e-90 336.3 392 55.1
FAN21G2890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.7e-84 315.8 158 98.7
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 4.8e-81 305.8 381 52.8
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 3.4e-74 283.1 378 49.7
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 1.6e-63 247.7 432 44.0
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 4.5e-63 246.1 420 45.7
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 8.0e-60 235.3 442 41.2
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 6.8e-59 232.3 453 42.2
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 2.7e-55 220.3 448 40.2
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 4.6e-55 219.5 437 39.6
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 1.5e-53 214.5 427 39.6
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 2.3e-51 207.2 414 38.6
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 6.8e-51 205.7 445 40.0
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 8.9e-51 205.3 456 38.8
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 4.4e-50 203.0 455 38.7
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 5.8e-50 202.6 449 39.0
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 2.1e-47 194.1 419 37.0
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 2.7e-47 193.7 428 37.1
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 2.5e-45 187.2 447 36.5
FAN21G2593 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.1e-44 184.1 119 83.2
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 5.2e-43 179.5 399 35.3
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 4.4e-42 176.4 345 41.7
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 7.5e-42 175.6 393 36.6
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 2.2e-41 174.1 402 35.8
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 2.9e-41 173.7 437 35.2
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 2.4e-40 170.6 403 36.2
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 2.1e-39 167.5 395 37.0
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.0e-38 163.7 407 33.9
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 2.5e-37 160.6 400 34.0
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 2.8e-36 157.1 398 35.7
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 3.6e-36 156.8 387 36.2
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 1.8e-35 154.5 376 35.6
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 3.1e-35 153.7 375 36.0
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 3.1e-35 153.7 426 33.6
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 3.1e-35 153.7 372 36.6
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 8.9e-35 152.1 377 34.2
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 1.2e-34 151.8 395 32.9
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 1.2e-34 151.8 414 34.1
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.3e-33 148.3 401 32.9
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 1.3e-33 148.3 441 33.8
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 1.7e-33 147.9 375 34.7
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 4.9e-33 146.4 405 33.8
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 6.4e-33 146.0 435 32.2
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 1.1e-32 145.2 395 31.4
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 2.4e-32 144.1 350 34.3
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 4.2e-32 143.3 394 31.2
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 5.4e-32 142.9 421 35.4
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 1.2e-31 141.7 403 34.5
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 2.7e-31 140.6 398 33.7
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 4.6e-31 139.8 381 35.2
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 6.0e-31 139.4 435 32.9
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 6.0e-31 139.4 409 32.5
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 7.8e-31 139.0 383 34.2
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 1.0e-30 138.7 415 31.8
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 1.7e-30 137.9 386 34.5
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 1.7e-30 137.9 368 34.2
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 6.6e-30 136.0 414 32.9
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 6.6e-30 136.0 394 32.5
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 1.1e-29 135.2 429 33.8
Dinv03102 Davidia involucrata HOM05D003726 ORTHO05D003520 4.3e-29 133.3 312 34.3
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 2.4e-27 127.5 425 31.1
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 3.1e-27 127.1 379 33.8
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 2.2e-25 120.9 390 32.3
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 2.4e-24 117.5 407 31.4
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 7.1e-24 115.9 406 28.8
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 2.1e-23 114.4 417 28.3
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 6.0e-23 112.8 409 29.8
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 7.8e-23 112.5 417 30.5
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 7.8e-23 112.5 356 34.0
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 3.0e-22 110.5 392 31.9
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 8.7e-22 109.0 424 28.3
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 8.7e-22 109.0 419 28.4
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 1.1e-21 108.6 378 29.4
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 1.5e-21 108.2 401 32.4
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 1.5e-21 108.2 392 32.9
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 1.9e-21 107.8 371 31.8
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 3.3e-21 107.1 297 33.3
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 3.6e-20 103.6 419 26.7
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 4.8e-20 103.2 414 28.7
TPR.G34575 Trifolium pratense HOM05D003726 ORTHO05D003520 8.1e-20 102.4 392 32.4
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 1.8e-19 101.3 427 27.6
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 3.1e-19 100.5 416 30.0
Ca_14944_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 6.9e-19 99.4 386 31.1
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 9.0e-19 99.0 385 28.6
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 1.5e-18 98.2 429 29.1
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 2.0e-18 97.8 412 30.3
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 3.4e-18 97.1 413 29.3
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 3.4e-18 97.1 382 28.5
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 4.5e-18 96.7 410 28.8
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 5.8e-18 96.3 378 28.6
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 9.9e-18 95.5 400 29.5
arahy.Tifrunner.gnm1.ann1.XHL4C7 Arachis hypogaea HOM05D003726 ORTHO05D003520 1.3e-17 95.1 367 28.6
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.3e-17 95.1 379 29.8
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 2.9e-17 94.0 425 25.4
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 3.8e-17 93.6 395 31.1
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 4.9e-17 93.2 417 27.1
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 1.4e-16 91.7 371 29.1
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 1.4e-16 91.7 403 27.0
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 5.4e-16 89.7 393 30.5
AL8G34900 Arabidopsis lyrata HOM05D011448 ORTHO05D003520 9.3e-16 89.0 383 30.5
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 9.3e-16 89.0 369 31.4
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.6e-15 88.2 412 27.2
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.5e-15 87.0 195 35.4
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 3.5e-15 87.0 403 32.0
arahy.Tifrunner.gnm1.ann1.8UNH89 Arachis hypogaea HOM05D003726 ORTHO05D003520 4.6e-15 86.7 369 27.1
Lsat_1_v5_gn_8_70880 Lactuca sativa HOM05D003726 ORTHO05D003520 6.0e-15 86.3 362 27.9
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 7.9e-15 85.9 238 34.9
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.0e-14 85.5 412 27.2
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 1.0e-14 85.5 410 30.0
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 2.3e-14 84.3 424 25.2
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 2.3e-14 84.3 401 25.7
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.3e-14 84.3 374 28.1
SalBow2G1798 Salvia bowleyana HOM05D003726 ORTHO05D003520 2.3e-14 84.3 354 27.7
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 3.0e-14 84.0 372 28.0
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 3.0e-14 84.0 372 28.0
BraA10t43670Z Brassica rapa HOM05D011448 ORTHO05D003520 3.0e-14 84.0 382 27.7
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 3.9e-14 83.6 369 25.2
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 3.9e-14 83.6 430 26.0
PGR031G0398 Punica granatum HOM05D003726 ORTHO05D003520 3.9e-14 83.6 396 27.8
MSTRG.12680 Avicennia marina HOM05D003726 ORTHO05D003520 6.7e-14 82.8 368 26.1
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 6.7e-14 82.8 431 26.2
AT5G58630 Arabidopsis thaliana HOM05D011448 ORTHO05D003520 8.7e-14 82.4 385 28.8
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 8.7e-14 82.4 426 26.1
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 8.7e-14 82.4 151 39.1
Lj3g0010607 Lotus japonicus HOM05D003726 ORTHO05D003520 1.1e-13 82.0 434 25.1
Psat2g057960 Pisum sativum HOM05D003726 ORTHO05D003520 1.1e-13 82.0 359 28.4
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 1.5e-13 81.6 363 29.2
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 2.5e-13 80.9 374 29.1
PSO384G5133 Papaver somniferum HOM05D003726 ORTHO05D003520 5.6e-13 79.7 308 28.9
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 7.4e-13 79.3 374 27.8
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 7.4e-13 79.3 383 28.7
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 9.6e-13 79.0 383 29.0
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 9.6e-13 79.0 397 24.9
Medtr5g071090 Medicago truncatula HOM05D003726 ORTHO05D003520 9.6e-13 79.0 248 31.9
Ca_05609_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 1.6e-12 78.2 251 33.5
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 2.8e-12 77.4 427 25.8
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 4.8e-12 76.6 399 29.1
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 6.2e-12 76.3 367 26.4
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 1.1e-11 75.5 375 28.5
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 1.4e-11 75.1 351 27.6
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 1.4e-11 75.1 351 27.6
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 1.4e-11 75.1 369 27.9
Sc07g0006660 Simmondsia chinensis HOM05D003726 ORTHO05D003520 4.0e-11 73.6 388 27.6
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 6.9e-11 72.8 190 35.8
Lsat_1_v5_gn_5_149441 Lactuca sativa HOM05D003726 ORTHO05D003520 2.6e-10 70.9 359 29.0
EL10Ac5g12551 Beta vulgaris HOM05D029928 ORTHO05D003520 4.5e-10 70.1 377 28.4
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 4.5e-10 70.1 390 26.9
RcHm_v2.0_Chr3g0462881 Rosa chinensis HOM05D003726 ORTHO05D003520 4.5e-10 70.1 411 24.8
C09p50710 Brassica napus HOM05D011448 ORTHO05D003520 5.8e-10 69.7 368 26.9
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 5.8e-10 69.7 361 29.9
SGA_v2.0_scaffold110G31210 Striga asiatica HOM05D003726 ORTHO05D003520 5.8e-10 69.7 378 27.2
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 2.9e-09 67.4 376 26.3
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 3.8e-09 67.0 190 33.2
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 3.8e-09 67.0 432 25.5
TAR636G2889 Trochodendron aralioides HOM05D003726 ORTHO05D003520 6.5e-09 66.2 177 36.7
HPP92_013884 Vanilla planifolia HOM05D003726 ORTHO05D003520 6.5e-09 66.2 252 29.8
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 8.4e-09 65.9 224 30.4
VMungo1383G2513 Vigna mungo HOM05D003726 ORTHO05D003520 1.1e-08 65.5 352 26.4
CDE04G1884 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 1.9e-08 64.7 405 26.7
Eucgr.A00522 Eucalyptus grandis HOM05D003726 ORTHO05D003520 1.9e-08 64.7 156 32.7
SalBow4G2563 Salvia bowleyana HOM05D003726 ORTHO05D003520 4.2e-08 63.5 157 34.4
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea HOM05D003726 ORTHO05D003520 5.5e-08 63.2 421 25.4
arahy.Tifrunner.gnm1.ann1.3NQ7J1 Arachis hypogaea HOM05D003726 ORTHO05D003520 7.1e-08 62.8 421 25.4
Peaxi162Scf79720g00003 Petunia axillaris HOM05D003726 ORTHO05D003520 9.3e-08 62.4 190 33.7
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 3.5e-07 60.5 398 24.9
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 3.5e-07 60.5 178 29.2
Lalb_Chr12g0207011 Lupinus albus HOM05D003726 ORTHO05D003520 1.0e-06 58.9 136 36.0
THA.LOC104816197 Tarenaya hassleriana HOM05D013727 ORTHO05D003520 1.8e-06 58.2 407 24.8
Hund11000 Selenicereus undatus HOM05D046068 ORTHO05D003520 3.0e-06 57.4 287 31.7
CDE08G1412 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 3.9e-06 57.0 361 25.8
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 3.9e-06 57.0 352 25.6
Hund29902 Selenicereus undatus HOM05D046068 ORTHO05D003520 3.9e-06 57.0 256 32.8


User provided reference genes

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