Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2200 Fragaria x ananassa HOM05D006284 ORTHO05D007793 2.5e-77 292.0 142 100.0
FAN11G1150 Fragaria x ananassa HOM05D006284 ORTHO05D007793 8.1e-76 287.0 142 98.6
FAN21G0749 Fragaria x ananassa HOM05D006284 ORTHO05D007793 8.1e-76 287.0 142 98.6
RcHm_v2.0_Chr5g0063801 Rosa chinensis HOM05D006284 ORTHO05D007793 4.6e-71 271.2 142 93.0
QL01p032751 Quercus lobata HOM05D006284 ORTHO05D007793 2.1e-63 245.7 140 83.6
CiPaw.13G097000 Carya illinoinensis HOM05D006284 ORTHO05D007793 6.0e-63 244.2 140 84.3
Atru.chr3.3846 Acer truncatum HOM05D006284 ORTHO05D007793 3.0e-62 241.9 139 84.9
Dinv03613 Davidia involucrata HOM05D006284 ORTHO05D007793 1.1e-61 240.0 139 82.7
Prupe.6G080800 Prunus persica HOM05D006284 ORTHO05D007793 1.5e-61 239.6 136 83.8
Haze_24061 Corylus avellana HOM05D006284 ORTHO05D007793 7.4e-61 237.3 140 82.1
Lalb_Chr01g0003741 Lupinus albus HOM05D006284 ORTHO05D007793 1.6e-60 236.1 139 82.0
Rhsim01G0226200 Rhododendron simsii HOM05D006284 ORTHO05D007793 6.3e-60 234.2 139 80.6
vmacro14530 Vaccinium macrocarpon HOM05D006284 ORTHO05D007793 6.3e-60 234.2 139 80.6
MSTRG.15272 Avicennia marina HOM05D006284 ORTHO05D007793 4.1e-59 231.5 135 83.0
Eucgr.B02382 Eucalyptus grandis HOM05D006284 ORTHO05D007793 6.9e-59 230.7 136 81.6
MD11G1144900 Malus domestica HOM05D006284 ORTHO05D007793 9.0e-59 230.3 138 79.7
arahy.Tifrunner.gnm1.ann1.W3SBYC Arachis hypogaea HOM05D006284 ORTHO05D007793 1.2e-58 229.9 140 79.3
arahy.Tifrunner.gnm1.ann1.6H51DS Arachis hypogaea HOM05D006284 ORTHO05D007793 3.4e-58 228.4 140 78.6
Hma1.2p1_1897F.1_g306861 Hydrangea macrophylla HOM05D006284 ORTHO05D007793 7.6e-58 227.3 134 81.3
Nitab4.5_0001304g0050 Nicotiana tabacum HOM05D006284 ORTHO05D007793 1.3e-57 226.5 139 78.4
Oeu041449.2 Olea europaea HOM05D006284 ORTHO05D007793 2.9e-57 225.3 139 77.0
Oeu056746.1 Olea europaea HOM05D006284 ORTHO05D007793 3.8e-57 224.9 139 75.5
A09p66230 Brassica napus HOM05D006284 ORTHO05D007793 6.5e-57 224.2 136 80.1
Peaxi162Scf00679g00212 Petunia axillaris HOM05D006284 ORTHO05D007793 6.5e-57 224.2 136 78.7
BcaC07g41981 Brassica carinata HOM05D006284 ORTHO05D007793 8.5e-57 223.8 136 80.1
BcaC07g42491 Brassica carinata HOM05D006284 ORTHO05D007793 8.5e-57 223.8 136 80.1
C08p50410 Brassica napus HOM05D006284 ORTHO05D007793 8.5e-57 223.8 136 80.1
BolC8t52569H Brassica oleracea HOM05D006284 ORTHO05D007793 8.5e-57 223.8 136 80.1
DCAR_015613 Daucus carota HOM05D006284 ORTHO05D007793 8.5e-57 223.8 137 77.4
Sed0023805 Sechium edule HOM05D006284 ORTHO05D007793 8.5e-57 223.8 139 75.5
Aa31sc281G30 Aethionema arabicum HOM05D006284 ORTHO05D007793 1.1e-56 223.4 139 77.7
EL10Ac7g15985 Beta vulgaris HOM05D006284 ORTHO05D007793 1.1e-56 223.4 139 76.3
Psat7g217680 Pisum sativum HOM05D006284 ORTHO05D007793 1.1e-56 223.4 138 77.5
BcaC07g42493 Brassica carinata HOM05D006284 ORTHO05D007793 1.9e-56 222.6 136 80.1
Carub.0001s0699 Capsella rubella HOM05D006284 ORTHO05D007793 1.9e-56 222.6 134 79.1
ClCG02G020310 Citrullus lanatus HOM05D006284 ORTHO05D007793 1.9e-56 222.6 142 73.9
Thhalv10009069m.g Eutrema salsugineum HOM05D006284 ORTHO05D007793 1.9e-56 222.6 136 80.1
AL1G17850 Arabidopsis lyrata HOM05D006284 ORTHO05D007793 2.5e-56 222.2 134 79.1
BraA09t41961Z Brassica rapa HOM05D006284 ORTHO05D007793 2.5e-56 222.2 136 79.4
CAN.G394.47 Capsicum annuum HOM05D006284 ORTHO05D007793 3.2e-56 221.9 135 76.3
PGR102G0171 Punica granatum HOM05D006284 ORTHO05D007793 3.2e-56 221.9 140 77.1
AT1G07645 Arabidopsis thaliana HOM05D006284 ORTHO05D007793 4.2e-56 221.5 134 79.1
Migut.L00518 Erythranthe guttata HOM05D006284 ORTHO05D007793 4.2e-56 221.5 137 79.6
Medtr4g063500 Medicago truncatula HOM05D006284 ORTHO05D007793 4.2e-56 221.5 139 77.0
TAR623G0100 Trochodendron aralioides HOM05D006284 ORTHO05D007793 5.5e-56 221.1 134 79.9
GSVIVG01025000001 Vitis vinifera HOM05D006284 ORTHO05D007793 7.2e-56 220.7 140 77.1
Aqoxy4G02964 Aquilegia oxysepala HOM05D006284 ORTHO05D007793 9.3e-56 220.3 141 73.8
ECA247G3393 Erigeron canadensis HOM05D006284 ORTHO05D007793 9.3e-56 220.3 135 79.3
PGSC0003DMG400030315 Solanum tuberosum HOM05D006284 ORTHO05D007793 9.3e-56 220.3 135 76.3
Thecc.09G324900 Theobroma cacao HOM05D006284 ORTHO05D007793 1.2e-55 219.9 141 75.9
Cpa.g.sc190.6 Carica papaya HOM05D006284 ORTHO05D007793 1.6e-55 219.5 139 78.4
Sopen06g032410 Solanum pennellii HOM05D006284 ORTHO05D007793 2.1e-55 219.2 135 74.8
HanXRQChr15g0493271 Helianthus annuus HOM05D006284 ORTHO05D007793 2.7e-55 218.8 135 78.5
C05p05670 Brassica napus HOM05D006284 ORTHO05D007793 3.6e-55 218.4 137 79.6
BolC5t29337H Brassica oleracea HOM05D006284 ORTHO05D007793 3.6e-55 218.4 137 79.6
BraA06t23686Z Brassica rapa HOM05D006284 ORTHO05D007793 3.6e-55 218.4 141 77.3
Ca_19180_v3 Cicer arietinum L. HOM05D006284 ORTHO05D007793 3.6e-55 218.4 138 76.1
Ca_31183_v3 Cicer arietinum L. HOM05D006284 ORTHO05D007793 3.6e-55 218.4 138 76.1
Lsat_1_v5_gn_5_183840 Lactuca sativa HOM05D006284 ORTHO05D007793 3.6e-55 218.4 135 79.3
Solyc06g075990.4 Solanum lycopersicum HOM05D006284 ORTHO05D007793 3.6e-55 218.4 134 74.6
Duzib168G1259 Durio zibethinus HOM05D006284 ORTHO05D007793 4.6e-55 218.0 141 74.5
Nitab4.5_0001838g0030 Nicotiana tabacum HOM05D006284 ORTHO05D007793 4.6e-55 218.0 136 75.7
Actinidia33860 Actinidia chinensis HOM05D006284 ORTHO05D007793 6.1e-55 217.6 138 76.1
A06p04820 Brassica napus HOM05D006284 ORTHO05D007793 7.9e-55 217.2 137 78.8
Sabra16G0143200 Salix brachista HOM05D006284 ORTHO05D007793 1.0e-54 216.9 138 77.5
Glyma.12G064500 Glycine max HOM05D006284 ORTHO05D007793 1.3e-54 216.5 139 75.5
Sp1g06380 Schrenkiella parvula HOM05D006284 ORTHO05D007793 1.3e-54 216.5 136 77.9
CARHR007450 Cardamine hirsuta HOM05D006284 ORTHO05D007793 1.8e-54 216.1 134 76.1
Potri.001G237500 Populus trichocarpa HOM05D006284 ORTHO05D007793 1.8e-54 216.1 138 75.4
BcaC07g42490 Brassica carinata HOM05D006284 ORTHO05D007793 3.0e-54 215.3 137 78.8
CANSAT54G2008 Cannabis sativa HOM05D006284 ORTHO05D007793 3.0e-54 215.3 140 73.6
MELO3C013690.2 Cucumis melo HOM05D006284 ORTHO05D007793 3.0e-54 215.3 142 70.4
Manes.11G132300 Manihot esculenta HOM05D006284 ORTHO05D007793 3.9e-54 214.9 136 77.2
Lsat_1_v5_gn_9_22581 Lactuca sativa HOM05D006284 ORTHO05D007793 6.7e-54 214.2 137 75.9
Gorai.009G100800 Gossypium raimondii HOM05D006284 ORTHO05D007793 8.7e-54 213.8 141 72.3
PSO339G4936 Papaver somniferum HOM05D006284 ORTHO05D007793 8.7e-54 213.8 139 75.5
Phvul.011G065500 Phaseolus vulgaris HOM05D006284 ORTHO05D007793 1.1e-53 213.4 139 74.8
AUR62009602 Chenopodium quinoa HOM05D006284 ORTHO05D007793 1.5e-53 213.0 139 74.1
Gohir.A05G097100 Gossypium hirsutum HOM05D006284 ORTHO05D007793 2.5e-53 212.2 141 71.6
VMungo1127G1430 Vigna mungo HOM05D006284 ORTHO05D007793 2.5e-53 212.2 139 73.4
CsaV3_6G017010 Cucumis sativus L. HOM05D006284 ORTHO05D007793 7.4e-53 210.7 142 70.4
COL.COLO4_18479 Corchorus olitorius HOM05D006284 ORTHO05D007793 1.3e-52 209.9 141 73.0
Lj3g0026697 Lotus japonicus HOM05D006284 ORTHO05D007793 1.6e-52 209.5 135 76.3
PSO384G0339 Papaver somniferum HOM05D006284 ORTHO05D007793 3.7e-52 208.4 139 74.1
SalBow5G5166 Salvia bowleyana HOM05D006284 ORTHO05D007793 6.3e-52 207.6 135 76.3
Migut.L00567 Erythranthe guttata HOM05D006284 ORTHO05D007793 8.2e-52 207.2 128 79.7
THA.LOC104800652 Tarenaya hassleriana HOM05D006284 ORTHO05D007793 8.2e-52 207.2 138 71.0
FvH4_3g35580 Fragaria vesca HOM05D006284 ORTHO05D007793 1.1e-51 206.8 142 78.9
Os03g0277500 Oryza sativa ssp. japonica HOM05D006284 ORTHO05D007793 1.8e-51 206.1 132 74.2
AUR62001816 Chenopodium quinoa HOM05D006284 ORTHO05D007793 5.3e-51 204.5 135 73.3
Gohir.D05G097250 Gossypium hirsutum HOM05D006284 ORTHO05D007793 5.3e-51 204.5 141 68.8
Sc06g0008270 Simmondsia chinensis HOM05D006284 ORTHO05D007793 2.2e-49 199.1 135 69.6
SGA_v2.0_scaffold606G53170 Striga asiatica HOM05D006284 ORTHO05D007793 4.6e-47 191.4 137 69.3
TWI79G0071 Tripterygium wilfordii HOM05D006284 ORTHO05D007793 3.9e-46 188.3 140 68.6
FAN11G3292 Fragaria x ananassa HOM05D006284 ORTHO05D007793 1.5e-45 186.4 142 74.6
SHI00991 Sapria himalayana HOM05D006284 ORTHO05D007793 9.7e-45 183.7 139 66.2
Gohir.A07G096400 Gossypium hirsutum HOM05D006284 ORTHO05D007793 6.9e-43 177.6 164 59.1
Zm00001eb012550 Zea mays HOM05D006284 ORTHO05D007793 6.9e-43 177.6 132 66.7
Ciclev10029580m.g Citrus clementina HOM05D006284 ORTHO05D007793 7.7e-42 174.1 114 75.4
MBI14_g11686_MAGBIO Magnolia biondii HOM05D006284 ORTHO05D007793 2.7e-39 165.6 96 82.3
CSS0000036 Camellia sinensis var. sinensis HOM05D006284 ORTHO05D007793 1.4e-38 163.3 139 61.9
SMO165G0091 Selaginella moellendorffii HOM05D006284 ORTHO05D007793 1.4e-38 163.3 132 58.3
Lj2A1058T40 Lonicera japonica HOM05D006284 ORTHO05D007793 8.8e-38 160.6 96 80.2
Gorai.001G108700 Gossypium raimondii HOM05D006284 ORTHO05D007793 9.7e-37 157.1 131 64.1
Mapoly0004s0146 Marchantia polymorpha HOM05D006284 ORTHO05D007793 1.3e-36 156.8 127 60.6
Gohir.D07G100800 Gossypium hirsutum HOM05D006284 ORTHO05D007793 2.2e-36 156.0 157 56.7
Oeu033642.1 Olea europaea HOM05D006284 ORTHO05D007793 2.2e-36 156.0 102 73.5
Oeu056758.1 Olea europaea HOM05D006284 ORTHO05D007793 1.1e-35 153.7 96 74.0
TPR.G10205 Trifolium pratense HOM05D006284 ORTHO05D007793 4.1e-35 151.8 101 74.3
Oeu056739.1 Olea europaea HOM05D006284 ORTHO05D007793 5.0e-33 144.8 136 57.4
DCAR_018897 Daucus carota HOM05D006284 ORTHO05D007793 1.1e-32 143.7 99 68.7
Oeu056743.1 Olea europaea HOM05D006284 ORTHO05D007793 1.9e-32 142.9 99 66.7
FvH4_3g35610 Fragaria vesca HOM05D006284 ORTHO05D007793 1.7e-28 129.8 142 54.9
Peaxi162Scf00406g00314 Petunia axillaris HOM05D006284 ORTHO05D007793 2.3e-22 109.4 139 45.3
AagrBONN_evm.TU.Sc2ySwM_117.384 Anthoceros agrestis HOM05D006284 ORTHO05D007793 5.2e-22 108.2 130 44.6
SEGI_15500 Sequoiadendron giganteum HOM05D006284 ORTHO05D007793 5.7e-21 104.8 96 55.2
AagrBONN_evm.TU.Sc2ySwM_344.4820 Anthoceros agrestis HOM05D006284 ORTHO05D007793 1.4e-19 100.1 95 52.6
MD07G1053700 Malus domestica HOM05D006284 ORTHO05D007793 7.7e-18 94.4 62 71.0
AagrBONN_evm.TU.Sc2ySwM_344.4822 Anthoceros agrestis HOM05D018382 ORTHO05D001873 2.9e-17 92.4 117 43.6
MD14G1025700 Malus domestica HOM05D006284 ORTHO05D007793 8.6e-17 90.9 62 67.7
CANSAT21G1079 Cannabis sativa HOM05D002411 ORTHO05D002564 1.1e-16 90.5 68 66.2
Pp3c19_1590 Physcomitrium patens HOM05D006284 ORTHO05D007793 3.6e-15 85.5 126 38.1
TPR.G10968 Trifolium pratense HOM05D006284 ORTHO05D007793 4.9e-12 75.1 43 81.4
Cc01_g12610 Coffea canephora HOM05D006284 ORTHO05D007793 8.3e-12 74.3 44 75.0
Ah.08g219180 Amaranthus hybridus HOM05D006284 ORTHO05D007793 7.3e-08 61.2 39 71.8
ATR0559G308 Amborella trichopoda HOM05D006284 ORTHO05D007793 7.3e-08 61.2 37 75.7
SEGI_40910 Sequoiadendron giganteum HOM05D006284 ORTHO05D007793 2.1e-07 59.7 45 57.8
Cc01_g12620 Coffea canephora HOM05D006284 ORTHO05D007793 6.1e-07 58.2 33 81.8


User provided reference genes

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