Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.6e-177 625.9 315 100.0
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 7.9e-172 607.1 315 97.5
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.6e-169 599.4 315 96.2
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 1.3e-161 573.2 315 93.3
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 6.5e-158 560.8 315 90.8
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 9.1e-136 487.3 315 78.1
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 7.2e-133 477.6 315 80.0
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 3.0e-131 472.2 315 76.2
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.0e-130 469.5 313 75.7
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 4.4e-130 468.4 314 74.8
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 2.8e-129 465.7 320 74.7
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 2.4e-128 462.6 316 74.4
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 7.0e-128 461.1 315 73.7
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 1.2e-127 460.3 316 72.8
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 1.2e-127 460.3 316 72.8
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 3.5e-127 458.8 316 73.4
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 5.9e-127 458.0 315 73.3
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 1.0e-126 457.2 315 72.7
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 1.7e-126 456.4 315 74.0
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 2.2e-126 456.1 315 74.0
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 2.9e-126 455.7 315 72.4
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 3.8e-126 455.3 315 72.7
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 6.5e-126 454.5 315 72.7
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 6.5e-126 454.5 316 73.1
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 1.5e-125 453.4 315 73.0
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 2.5e-125 452.6 315 73.0
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 3.2e-125 452.2 315 73.7
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 4.2e-125 451.8 315 73.3
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 4.2e-125 451.8 359 66.3
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 5.5e-125 451.4 315 72.7
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 5.5e-125 451.4 313 72.2
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 5.5e-125 451.4 315 73.7
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 9.4e-125 450.7 315 72.4
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 9.4e-125 450.7 315 72.1
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 9.4e-125 450.7 315 72.1
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 9.4e-125 450.7 315 74.3
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 1.2e-124 450.3 315 72.4
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 2.1e-124 449.5 315 73.0
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 2.7e-124 449.1 315 70.8
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 1.4e-123 446.8 315 72.7
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 1.8e-123 446.4 313 70.6
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 2.3e-123 446.0 315 73.0
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 3.0e-123 445.7 315 71.7
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 3.0e-123 445.7 315 71.7
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 3.0e-123 445.7 313 70.6
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 4.0e-123 445.3 312 72.8
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 4.0e-123 445.3 315 72.1
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 4.0e-123 445.3 320 72.2
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 4.0e-123 445.3 312 72.1
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 4.0e-123 445.3 312 72.1
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 4.0e-123 445.3 315 71.1
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 4.0e-123 445.3 313 70.3
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 5.2e-123 444.9 315 71.4
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 1.2e-122 443.7 313 70.6
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 2.0e-122 443.0 315 71.1
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 3.4e-122 442.2 320 71.9
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 9.8e-122 440.7 315 71.1
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.3e-121 440.3 300 72.7
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.3e-121 440.3 315 69.2
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 1.3e-121 440.3 315 70.5
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 1.3e-121 440.3 313 70.3
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.7e-121 439.9 315 69.8
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 3.7e-121 438.7 315 71.4
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 3.7e-121 438.7 310 71.0
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 4.8e-121 438.3 313 70.3
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 1.8e-120 436.4 315 68.6
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 2.4e-120 436.0 315 70.5
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 2.4e-120 436.0 316 70.9
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 5.4e-120 434.9 315 68.9
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 7.0e-120 434.5 315 70.8
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 9.1e-120 434.1 317 69.1
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 2.0e-119 433.0 315 68.9
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 1.0e-118 430.6 315 69.8
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 1.3e-118 430.3 315 68.6
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 8.6e-118 427.6 315 68.9
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 8.6e-118 427.6 315 70.5
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 7.2e-117 424.5 314 68.8
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 7.2e-117 424.5 316 68.4
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 1.4e-115 420.2 311 68.2
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.4e-115 420.2 315 68.6
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 4.0e-115 418.7 303 69.0
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 4.0e-115 418.7 299 69.9
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.2e-114 417.2 315 67.9
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 3.4e-114 415.6 311 66.6
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 4.4e-114 415.2 312 66.3
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 7.5e-114 414.5 315 66.7
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 7.5e-114 414.5 312 67.0
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 7.5e-114 414.5 313 67.1
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 9.8e-114 414.1 312 66.3
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 9.8e-114 414.1 312 66.0
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 9.8e-114 414.1 315 67.0
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 1.3e-113 413.7 312 66.0
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 1.7e-113 413.3 300 69.3
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 2.2e-113 412.9 312 66.7
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 2.2e-113 412.9 312 66.0
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 4.9e-113 411.8 315 66.7
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 4.9e-113 411.8 300 70.3
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 1.8e-112 409.8 280 72.9
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 2.4e-112 409.5 312 66.3
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 2.4e-112 409.5 312 66.3
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 4.1e-112 408.7 316 65.5
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 9.2e-112 407.5 294 70.4
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 2.0e-111 406.4 316 65.5
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 2.7e-111 406.0 312 65.7
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 3.8e-110 402.1 312 65.4
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.6e-108 396.7 268 73.5
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 9.8e-106 387.5 315 65.1
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 1.3e-105 387.1 312 63.8
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 7.8e-103 377.9 315 62.2
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 7.3e-101 371.3 338 58.6
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 2.4e-96 356.3 244 72.5
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 3.5e-95 352.4 309 55.0
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 5.0e-94 348.6 315 58.7
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 9.9e-90 334.3 241 71.0
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 2.2e-89 333.2 237 71.7
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 1.9e-88 330.1 312 54.8
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 1.0e-86 324.3 312 52.6
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 3.0e-86 322.8 241 67.6
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 9.5e-85 317.8 241 67.2
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.6e-84 317.0 290 58.6
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 2.1e-84 316.6 280 56.4
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 3.6e-84 315.8 312 51.0
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 5.2e-83 312.0 308 52.3
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 4.4e-82 308.9 313 51.8
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 9.2e-80 301.2 290 56.9
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 3.0e-78 296.2 238 63.4
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 1.3e-68 264.2 274 49.6
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 2.8e-68 263.1 191 69.6
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.2e-66 257.7 270 53.7
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 5.4e-64 248.8 177 68.4
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 4.9e-57 225.7 220 55.9
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.9e-56 223.8 180 62.2
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 2.7e-55 219.9 168 67.3
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 1.1e-53 214.5 149 68.5
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 5.6e-53 212.2 143 69.2
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 4.8e-52 209.1 135 74.1
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 2.9e-41 173.3 182 53.3
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 1.4e-40 171.0 284 35.6
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 5.1e-38 162.5 163 55.2
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 1.1e-37 161.4 106 76.4
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 5.9e-34 149.1 81 93.8
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 5.5e-32 142.5 317 32.5
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 2.1e-31 140.6 99 65.7
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.0e-30 138.3 107 66.4
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 6.3e-28 129.0 124 57.3
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 1.7e-20 104.4 64 78.1
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 6.3e-20 102.4 288 26.4
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 2.6e-18 97.1 133 46.6
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 8.5e-17 92.0 146 39.7
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 9.4e-16 88.6 114 45.6
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 2.3e-14 84.0 114 43.9
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 3.1e-11 73.6 91 47.3
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 4.2e-08 63.2 38 73.7
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 4.2e-08 63.2 60 51.7
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 9.4e-08 62.0 35 80.0
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 5.2e-06 56.2 71 46.5


User provided reference genes

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