Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 2.2e-126 455.7 240 100.0
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 2.3e-123 445.7 240 97.1
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 2.3e-123 445.7 240 97.1
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.4e-120 436.4 230 99.1
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 2.2e-118 429.1 242 93.0
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 2.9e-118 428.7 230 97.0
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 3.4e-98 362.1 239 82.0
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 5.4e-96 354.8 240 82.5
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 1.5e-93 346.7 242 81.0
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 2.3e-78 296.2 221 74.2
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 6.6e-78 294.7 237 68.8
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 4.3e-77 292.0 242 68.6
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 7.3e-77 291.2 247 66.4
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 7.3e-77 291.2 244 67.2
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.6e-76 290.0 241 67.2
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.6e-76 290.0 244 68.4
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 1.1e-75 287.3 245 66.5
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 1.8e-75 286.6 242 68.2
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.8e-75 286.6 238 68.1
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 4.0e-75 285.4 236 69.5
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 4.0e-75 285.4 246 66.7
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 5.2e-75 285.0 248 64.5
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 3.4e-74 282.3 247 65.6
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 3.4e-74 282.3 246 65.4
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 7.5e-74 281.2 246 66.7
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 1.7e-73 280.0 208 72.1
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 2.9e-73 279.3 238 66.0
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 4.1e-72 275.4 248 64.5
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 4.1e-72 275.4 250 64.0
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 9.2e-72 274.2 250 63.2
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 9.2e-72 274.2 250 63.2
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 1.2e-71 273.9 235 66.4
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.6e-71 273.5 237 64.1
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 2.1e-71 273.1 237 64.1
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 2.7e-71 272.7 246 62.2
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 4.6e-71 271.9 243 63.8
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 6.0e-71 271.6 247 64.0
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 6.0e-71 271.6 235 66.4
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 7.8e-71 271.2 238 63.9
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 7.8e-71 271.2 254 62.6
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.3e-70 270.4 242 64.0
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 1.7e-70 270.0 237 63.7
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 1.7e-70 270.0 241 63.5
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 2.3e-70 269.6 242 66.9
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 5.1e-70 268.5 236 64.0
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 6.6e-70 268.1 217 69.1
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 6.6e-70 268.1 250 62.4
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 8.6e-70 267.7 236 63.6
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 8.6e-70 267.7 247 63.2
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 8.6e-70 267.7 245 64.1
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.1e-69 267.3 241 62.7
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 1.1e-69 267.3 242 66.1
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 1.5e-69 266.9 250 62.0
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 2.5e-69 266.2 246 60.2
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 2.5e-69 266.2 237 63.7
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 4.3e-69 265.4 245 63.7
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 5.6e-69 265.0 246 63.0
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 7.3e-69 264.6 206 70.4
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 9.5e-69 264.2 250 62.8
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 3.6e-68 262.3 242 62.8
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 3.6e-68 262.3 253 62.1
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 3.6e-68 262.3 253 62.1
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 4.7e-68 261.9 242 62.8
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 4.7e-68 261.9 245 65.3
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 8.1e-68 261.2 210 67.1
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.1e-67 260.8 242 62.0
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 1.4e-67 260.4 254 61.4
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 1.8e-67 260.0 242 63.2
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 1.8e-67 260.0 210 66.7
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.3e-67 259.6 267 59.6
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 3.1e-67 259.2 246 61.4
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 3.1e-67 259.2 226 64.2
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 3.1e-67 259.2 202 69.8
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 5.2e-67 258.5 245 64.1
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 8.9e-67 257.7 199 69.3
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 3.4e-66 255.8 206 68.4
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 5.8e-66 255.0 251 59.4
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 7.6e-66 254.6 241 58.9
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.7e-65 253.4 247 58.7
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 2.2e-65 253.1 251 58.2
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 4.9e-65 251.9 235 60.9
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 4.9e-65 251.9 239 59.8
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 4.9e-65 251.9 239 61.5
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 1.9e-64 250.0 196 67.9
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 1.9e-64 250.0 209 65.1
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 2.4e-64 249.6 197 69.5
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 3.2e-64 249.2 231 64.1
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 4.1e-64 248.8 239 60.7
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.6e-63 246.9 249 59.4
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.6e-63 246.9 254 58.7
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.1e-63 246.5 254 58.7
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 7.8e-63 244.6 204 67.2
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 7.8e-63 244.6 241 57.3
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 2.3e-62 243.0 246 59.8
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 2.3e-62 243.0 243 57.2
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 3.0e-62 242.7 246 60.2
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.9e-62 242.3 204 66.7
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.1e-61 240.7 204 65.7
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.9e-61 240.0 236 59.3
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 1.6e-60 236.9 210 66.2
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 4.7e-60 235.3 208 64.9
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.7e-57 226.9 228 56.1
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 8.4e-57 224.6 233 56.7
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 2.4e-56 223.0 242 54.1
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 7.1e-56 221.5 233 55.4
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 9.3e-56 221.1 227 56.4
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 1.6e-55 220.3 231 55.4
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 1.0e-54 217.6 238 55.9
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 5.1e-54 215.3 226 56.6
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 5.1e-54 215.3 231 55.0
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 6.6e-54 214.9 228 56.1
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 1.5e-53 213.8 264 52.7
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.5e-53 213.0 230 54.8
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.3e-53 212.6 261 52.9
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 9.6e-53 211.1 176 67.0
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 1.3e-52 210.7 246 54.1
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.6e-52 210.3 200 59.0
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 2.1e-52 209.9 239 52.3
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 2.8e-52 209.5 265 51.7
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 6.2e-52 208.4 219 55.7
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 1.4e-51 207.2 197 58.4
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 2.4e-51 206.5 233 52.8
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 3.1e-51 206.1 219 54.8
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 6.9e-51 204.9 199 58.8
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 2.0e-50 203.4 164 68.3
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 2.0e-50 203.4 164 68.3
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 2.0e-50 203.4 164 68.3
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 4.5e-50 202.2 264 52.3
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 3.8e-49 199.1 212 55.7
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 4.2e-48 195.7 162 66.7
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 4.3e-45 185.7 237 48.9
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 1.5e-42 177.2 200 55.5
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 4.5e-42 175.6 175 59.4
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 2.2e-41 173.3 128 71.1
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.2e-41 173.3 185 55.1
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 4.9e-41 172.2 202 54.0
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.1e-40 171.0 187 52.9
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 6.0e-39 165.2 224 48.7
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 1.6e-36 157.1 216 46.3
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 4.0e-35 152.5 157 53.5
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 4.0e-35 152.5 223 47.1
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.4e-34 149.4 113 71.7
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 7.6e-34 148.3 200 49.0
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 4.9e-33 145.6 193 50.3
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 8.4e-33 144.8 219 47.5
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 4.2e-32 142.5 99 74.7
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 3.5e-31 139.4 96 80.2
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.4e-24 117.5 200 42.5
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 2.1e-23 113.6 129 51.9
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 7.9e-23 111.7 89 60.7
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 1.7e-20 104.0 126 47.6
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 7.2e-16 88.6 113 48.7
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 6.7e-14 82.0 155 41.3
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 6.3e-12 75.5 85 54.1
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 1.1e-11 74.7 92 45.7
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 1.1e-11 74.7 85 54.1
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 8.5e-09 65.1 70 57.1


User provided reference genes

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