Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 2285.8 1186 100.0
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 2195.2 1187 96.7
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 0.0e+00 2121.7 1160 95.9
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 2101.2 1223 90.4
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 2093.9 1212 91.7
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1943.7 1143 88.4
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 0.0e+00 1676.4 1160 76.3
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 0.0e+00 1618.6 1167 73.9
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 0.0e+00 1451.4 1179 67.5
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 0.0e+00 1445.6 1180 66.9
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 0.0e+00 1439.9 1206 65.9
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 0.0e+00 1427.2 1180 65.8
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1408.7 1173 66.2
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1403.7 1173 65.9
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 0.0e+00 1399.0 1178 64.9
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 0.0e+00 1385.9 1177 63.6
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 0.0e+00 1364.0 1175 63.7
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 0.0e+00 1352.0 1185 62.2
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1347.8 1186 62.2
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 0.0e+00 1337.0 1188 61.9
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1327.4 1180 61.4
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 0.0e+00 1322.0 1173 63.1
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 0.0e+00 1316.2 1177 61.3
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 0.0e+00 1300.4 1174 60.7
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 0.0e+00 1296.2 1173 60.8
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 0.0e+00 1290.4 1177 61.6
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 0.0e+00 1279.6 1172 60.9
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 0.0e+00 1275.0 1166 61.1
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 0.0e+00 1266.1 1163 60.7
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1264.6 1177 59.9
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 0.0e+00 1257.7 1165 60.6
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 0.0e+00 1255.0 1105 62.5
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 0.0e+00 1253.0 1231 57.8
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 0.0e+00 1252.3 1165 60.3
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1246.1 1168 60.3
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1243.8 1176 59.9
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 0.0e+00 1242.3 1171 59.2
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1241.1 1168 60.2
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 0.0e+00 1229.2 1165 59.3
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 0.0e+00 1228.8 1175 58.7
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 0.0e+00 1227.2 1177 59.0
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 0.0e+00 1219.5 1177 59.2
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1213.4 1172 59.9
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 0.0e+00 1188.3 1174 57.2
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 0.0e+00 1184.1 1185 57.2
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 0.0e+00 1173.7 1081 61.2
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 0.0e+00 1167.1 1196 54.7
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 0.0e+00 1166.0 1180 55.3
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 0.0e+00 1161.4 1180 55.3
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 0.0e+00 1149.4 1197 54.6
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 0.0e+00 1145.2 1189 54.8
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 0.0e+00 1145.2 1181 56.6
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1135.9 1240 53.0
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 0.0e+00 1134.0 1176 55.6
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 0.0e+00 1130.9 1180 54.8
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 0.0e+00 1129.0 1163 54.8
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 0.0e+00 1115.5 1002 62.3
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 0.0e+00 1114.4 1191 53.3
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 0.0e+00 1105.9 1182 53.6
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1091.3 1175 54.4
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 0.0e+00 1089.3 1161 52.5
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1086.6 1175 54.2
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 5.9e-311 1071.2 1184 52.4
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 7.0e-309 1064.3 1155 52.7
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 3.5e-308 1062.0 1165 52.4
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 5.5e-306 1054.7 1193 52.4
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 3.0e-304 1048.9 1168 52.3
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 2.6e-303 1045.8 1174 51.4
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 4.9e-302 1041.6 1232 49.0
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 1.2e-297 1026.9 1184 50.3
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 2.0e-295 1019.6 1178 51.0
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 1.4e-293 1013.4 1170 50.9
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 1.6e-292 1010.0 1185 52.4
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 6.0e-292 1008.1 1191 50.2
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 5.4e-285 984.9 1122 49.9
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 2.6e-279 966.1 1114 51.7
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 2.2e-278 963.0 1055 53.5
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 2.4e-277 959.5 1166 47.3
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 2.7e-276 956.1 780 67.8
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 2.4e-272 943.0 1027 54.3
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 3.9e-267 925.6 1237 47.5
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 2.0e-255 886.7 730 65.9
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 1.4e-240 837.4 1172 44.7
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 4.1e-240 835.9 1171 44.8
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 6.9e-240 835.1 1041 47.7
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 2.8e-225 786.6 765 59.1
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 2.6e-215 753.4 959 46.2
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 3.5e-207 726.5 1173 41.2
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 4.6e-167 593.2 1170 36.2
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 3.1e-163 580.5 1211 35.5
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 3.7e-161 573.5 606 51.2
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 1.5e-149 535.0 1264 35.0
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 1.5e-133 481.9 1147 35.0
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 3.0e-126 457.6 628 47.8
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 2.1e-111 408.3 378 56.6
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 1.6e-103 382.1 387 55.0
Actinidia20425 Actinidia chinensis HOM05D006963 ORTHO05D008783 1.2e-85 322.8 444 46.4
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 1.1e-80 306.2 511 37.2
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 1.3e-73 282.7 1183 27.6
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 1.2e-61 243.0 392 40.1
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 3.2e-35 155.2 214 45.3
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 1.6e-31 142.9 263 37.6
MD11G1148100 Malus domestica HOM05D006963 ORTHO05D008783 4.0e-30 138.3 121 62.8
Dinv29380 Davidia involucrata HOM05D006963 ORTHO05D008783 9.0e-30 137.1 119 59.7
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 9.9e-29 133.7 267 37.8
Nn2g13854 Nelumbo nucifera HOM05D006963 ORTHO05D008783 1.3e-28 133.3 124 58.9
TAR623G0981 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.3e-28 133.3 86 65.1
CSS0014134 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 2.9e-28 132.1 124 57.3
SEGI_19036 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 4.3e-24 118.2 93 60.2
CAN.G1432.11 Capsicum annuum HOM05D006963 ORTHO05D008783 3.7e-23 115.2 71 73.2
Psat0s1214g0160 Pisum sativum HOM05D006963 ORTHO05D008783 5.3e-22 111.3 92 56.5
Oeu008361.1 Olea europaea HOM05D006963 ORTHO05D008783 6.9e-22 110.9 109 52.3
TAR623G0866 Trochodendron aralioides HOM05D006963 ORTHO05D008783 8.4e-20 104.0 81 54.3
Pp3c7_26050 Physcomitrium patens HOM05D006963 ORTHO05D008783 2.1e-07 62.8 74 41.9


User provided reference genes

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