Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2488.8 1240 100.0
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 2471.0 1240 99.4
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2471.0 1240 99.4
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2444.8 1240 98.1
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2427.5 1240 97.8
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 2356.6 1256 93.6
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 2243.0 1260 88.7
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 2229.9 1260 88.1
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 2210.3 1260 87.5
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 2047.3 1263 80.9
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 2034.6 1256 80.1
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 2034.6 1258 79.3
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 2032.7 1258 80.4
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 2027.7 1262 79.6
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 2025.4 1260 80.7
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 2024.2 1260 80.1
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 2020.7 1260 79.6
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2014.2 1258 79.2
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2013.0 1258 79.1
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 2010.7 1267 78.9
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 2004.6 1258 79.3
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1996.1 1260 77.9
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1992.2 1256 78.2
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1989.5 1267 77.7
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1988.0 1300 76.0
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1987.6 1259 78.0
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1987.6 1256 78.0
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1982.6 1252 78.5
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1974.1 1262 77.7
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1968.4 1252 78.0
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1957.6 1254 77.5
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1952.9 1257 76.6
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1948.7 1258 76.9
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1943.3 1250 78.5
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1940.6 1254 77.0
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1940.6 1254 76.4
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1928.3 1257 75.9
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1927.5 1256 76.0
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1924.8 1518 67.0
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1924.4 1257 75.4
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1922.1 1258 75.7
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1921.0 1282 75.0
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1917.9 1257 75.0
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1917.1 1263 75.2
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1917.1 1263 75.1
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1915.2 1273 74.7
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1911.3 1320 73.3
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1905.6 1283 73.7
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1900.9 1258 75.3
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1899.0 1258 74.9
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1898.6 1258 74.8
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1895.2 1258 73.6
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1894.0 1258 74.8
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1892.5 1257 74.9
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1891.3 1258 74.2
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1890.2 1260 74.3
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1886.7 1257 74.4
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1878.6 1290 72.5
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1876.3 1258 73.7
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1876.3 1258 74.3
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1875.5 1256 74.9
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1874.0 1269 73.0
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1874.0 1259 73.5
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1874.0 1259 73.5
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1872.8 1260 73.4
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1871.3 1259 73.4
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1870.1 1258 73.4
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1869.7 1260 73.4
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1867.8 1264 73.4
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1867.4 1265 73.2
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1866.7 1259 73.6
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1866.7 1243 74.4
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1862.8 1257 74.0
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1861.7 1257 73.7
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1860.1 1258 73.0
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1858.2 1258 72.9
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1855.5 1258 73.0
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1850.9 1259 72.9
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1849.3 1259 72.3
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1848.9 1258 73.0
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1842.0 1259 72.8
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1839.7 1259 72.5
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1837.4 1262 72.7
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1831.2 1258 72.3
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1824.7 1242 73.8
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1820.8 1162 78.0
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1805.0 1273 72.4
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1781.9 1157 75.9
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1777.7 1322 68.2
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1763.0 1229 71.9
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1735.3 1257 69.5
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1716.8 1259 67.5
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1626.3 1035 78.0
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1624.4 1096 73.4
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1606.3 1078 73.7
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1604.3 1219 65.7
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1595.5 1254 63.6
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1585.1 999 79.0
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1562.7 1050 75.0
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1520.0 1062 71.5
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1506.1 1030 72.6
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1452.2 1096 68.8
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1432.9 925 77.4
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1424.8 1014 70.4
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1378.2 856 80.1
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1274.6 1393 49.2
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1171.4 1257 51.8
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1152.5 1357 47.1
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1151.3 769 74.5
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1100.9 746 72.3
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 0.0e+00 1078.9 859 64.7
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 8.4e-302 1040.8 1011 55.9
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 2.2e-278 963.0 1147 46.1
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 1.1e-269 934.1 592 78.9
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.4e-251 874.0 536 80.4
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 7.7e-247 858.2 847 55.5
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 6.0e-207 725.7 446 79.8
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 3.9e-206 723.0 1437 34.0
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 8.4e-193 678.7 454 74.7
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 7.7e-154 549.3 489 58.3
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 5.0e-153 546.6 306 85.3
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 2.9e-121 441.0 316 68.0
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 2.4e-99 368.2 205 85.9
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 4.4e-93 347.4 316 59.8
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 2.4e-91 341.7 372 49.2
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.4e-86 325.1 194 78.9
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 7.1e-83 313.5 256 60.9
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 3.1e-78 298.1 165 86.7
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 1.5e-77 295.8 159 90.6
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 8.4e-76 290.0 209 70.8
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 2.1e-74 285.4 205 70.7
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.7e-74 285.0 262 54.6
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 5.1e-73 280.8 260 57.3
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 5.1e-73 280.8 260 57.3
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 5.1e-73 280.8 260 57.3
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 4.9e-68 264.2 432 36.8
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 7.1e-67 260.4 152 80.3
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 4.6e-66 257.7 197 65.5
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 6.7e-65 253.8 180 65.6
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 4.5e-61 241.1 153 75.8
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 4.3e-56 224.6 160 72.5
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 3.0e-49 201.8 132 74.2
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.1e-48 199.9 152 64.5
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.1e-48 199.9 136 66.2
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 6.9e-46 190.7 109 78.0
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 2.0e-45 189.1 163 57.7
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.3e-44 186.4 109 77.1
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.5e-43 182.2 109 76.1
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.5e-43 182.2 109 76.1
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 3.0e-41 175.3 109 74.3
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 5.1e-41 174.5 126 67.5
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 9.7e-40 170.2 111 74.8
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.1e-38 165.2 98 79.6
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.0e-37 162.5 121 69.4
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 1.3e-36 159.8 102 76.5
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.9e-35 156.0 98 79.6
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 7.4e-32 144.1 81 80.2
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 2.8e-31 142.1 130 59.2
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.0e-29 136.0 87 70.1
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 3.5e-29 135.2 87 75.9
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 4.4e-24 118.2 65 80.0
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 3.7e-23 115.2 98 63.3
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 5.0e-20 104.8 583 25.0
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 8.5e-20 104.0 107 45.8
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.5e-19 102.4 62 77.4
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 1.8e-17 96.3 67 68.7
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 8.8e-17 94.0 57 78.9
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.4e-16 92.0 52 80.8
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 7.5e-16 90.9 81 56.8
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 7.7e-13 80.9 99 45.5
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 2.5e-11 75.9 100 42.0
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.6e-10 73.2 69 49.3
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 1.5e-08 66.6 374 22.7
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 1.7e-07 63.2 52 61.5


User provided reference genes

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