Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 9.2e-108 393.7 211 100.0
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 5.6e-97 357.8 213 93.4
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 2.4e-92 342.4 213 90.1
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 1.4e-76 290.0 213 77.0
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 2.4e-68 262.7 214 71.5
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 3.2e-68 262.3 163 89.0
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 7.9e-67 257.7 153 91.5
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.7e-66 256.5 151 92.7
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 1.1e-65 253.8 216 67.1
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 4.3e-65 251.9 218 65.6
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 4.3e-65 251.9 217 67.7
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 1.6e-64 250.0 220 65.0
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 8.1e-64 247.7 215 65.6
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 2.0e-62 243.0 216 65.3
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 2.6e-62 242.7 218 65.6
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 6.4e-61 238.0 216 63.0
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 1.1e-60 237.3 211 65.9
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 1.9e-60 236.5 217 64.1
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 2.4e-60 236.1 217 61.3
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 1.6e-59 233.4 220 60.9
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 2.7e-59 232.6 217 60.8
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 6.0e-59 231.5 217 62.2
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 6.0e-59 231.5 221 62.9
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 1.0e-58 230.7 226 60.6
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 1.3e-58 230.3 184 67.9
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 1.3e-58 230.3 184 67.9
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 1.3e-58 230.3 215 61.4
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 1.8e-58 229.9 221 62.4
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 2.3e-58 229.6 219 61.6
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 3.9e-58 228.8 218 62.4
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 5.1e-58 228.4 212 61.3
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 6.7e-58 228.0 217 61.3
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 1.1e-57 227.3 210 61.4
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 1.5e-57 226.9 218 60.6
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 1.5e-57 226.9 223 61.9
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 4.3e-57 225.3 224 58.9
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 5.6e-57 224.9 221 58.8
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 9.6e-57 224.2 212 61.3
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 1.3e-56 223.8 218 60.6
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 1.6e-56 223.4 223 61.0
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 4.8e-56 221.9 215 57.7
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 2.4e-55 219.5 217 59.0
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 2.4e-55 219.5 187 66.3
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 3.1e-55 219.2 220 60.0
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 5.3e-55 218.4 232 57.3
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 5.3e-55 218.4 217 59.9
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 2.0e-54 216.5 226 58.8
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 2.6e-54 216.1 215 56.7
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 3.4e-54 215.7 215 56.3
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 4.5e-54 215.3 174 67.2
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 5.8e-54 214.9 219 55.3
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 5.8e-54 214.9 188 63.8
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 7.6e-54 214.5 172 68.6
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 1.7e-53 213.4 218 57.8
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 4.9e-53 211.8 217 54.4
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 6.5e-53 211.5 206 57.8
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 8.4e-53 211.1 220 57.3
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 1.9e-52 209.9 204 56.9
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 2.5e-52 209.5 216 60.2
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 4.2e-52 208.8 216 56.0
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 5.5e-52 208.4 214 57.5
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 5.5e-52 208.4 202 56.9
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 2.1e-51 206.5 208 58.7
MD05G1313300 Malus domestica HOM05D006133 ORTHO05D007855 6.0e-51 204.9 155 73.5
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 1.0e-50 204.1 192 59.9
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 1.0e-50 204.1 214 54.2
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 3.0e-50 202.6 199 59.3
CAN.G1164.26 Capsicum annuum HOM05D006133 ORTHO05D007855 6.7e-50 201.4 219 55.7
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 8.7e-50 201.1 181 61.9
Sopen02g023140 Solanum pennellii HOM05D006133 ORTHO05D007855 3.3e-49 199.1 219 55.7
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 1.3e-48 197.2 189 61.4
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 3.7e-48 195.7 214 53.7
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 8.2e-48 194.5 216 56.5
PGSC0003DMG400029689 Solanum tuberosum HOM05D006133 ORTHO05D007855 2.4e-47 193.0 219 54.3
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 2.6e-46 189.5 256 50.0
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 2.2e-45 186.4 219 53.9
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 2.5e-44 183.0 219 53.9
BraA04t18104Z Brassica rapa HOM05D006133 ORTHO05D007855 2.7e-43 179.5 189 55.0
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 3.5e-43 179.1 175 56.0
SMO353G0258 Selaginella moellendorffii HOM05D006133 ORTHO05D007855 4.6e-43 178.7 177 52.0
C04p63360 Brassica napus HOM05D006133 ORTHO05D007855 7.9e-43 177.9 211 49.3
Solyc02g078280.3 Solanum lycopersicum HOM05D006133 ORTHO05D007855 7.9e-43 177.9 200 55.5
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 1.0e-42 177.6 150 66.7
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 3.9e-42 175.6 214 50.9
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 6.7e-42 174.9 217 50.2
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 1.5e-41 173.7 151 64.2
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 1.5e-41 173.7 216 48.6
Dinv07556 Davidia involucrata HOM05D006133 ORTHO05D007855 1.9e-41 173.3 161 63.4
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 4.3e-41 172.2 153 59.5
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 9.7e-41 171.0 185 50.8
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 1.6e-40 170.2 202 46.0
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 8.2e-40 167.9 153 58.8
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 8.2e-40 167.9 223 48.0
Gohir.D10G026300 Gossypium hirsutum HOM05D006133 ORTHO05D007855 5.3e-39 165.2 172 58.7
Solyc02g078290.4 Solanum lycopersicum HOM05D006133 ORTHO05D007855 1.3e-37 160.6 167 56.3
AagrBONN_evm.TU.Sc2ySwM_228.202 Anthoceros agrestis HOM05D006133 ORTHO05D007855 2.2e-37 159.8 215 43.3
Sed0025328 Sechium edule HOM05D006133 ORTHO05D007855 1.6e-35 153.7 171 55.0
Sabra11G0035700 Salix brachista HOM05D006133 ORTHO05D007855 1.5e-33 147.1 216 47.2
CANSAT35G1333 Cannabis sativa HOM05D006133 ORTHO05D007855 5.7e-33 145.2 180 51.7
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 1.3e-32 144.1 216 45.4
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 8.2e-32 141.4 214 46.3
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 6.9e-31 138.3 224 46.0
PGR004G1018 Punica granatum HOM05D006133 ORTHO05D007855 2.5e-28 129.8 220 47.3
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 2.7e-27 126.3 198 41.9
Mapoly0103s0052 Marchantia polymorpha HOM05D006133 ORTHO05D007855 3.6e-27 125.9 180 38.3
GSVIVG01033625001 Vitis vinifera HOM05D006133 ORTHO05D007855 1.8e-23 113.6 174 45.4
Cpa.g.sc39.10 Carica papaya HOM05D006133 ORTHO05D007855 3.5e-22 109.4 138 52.9
Lalb_Chr05g0218461 Lupinus albus HOM05D006133 ORTHO05D007855 9.4e-20 101.3 213 37.6
BcaB02g10593 Brassica carinata HOM05D006133 ORTHO05D007855 2.1e-19 100.1 106 52.8
Os07g0256300 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 4.4e-17 92.4 152 36.2
Zm00001eb304600 Zea mays HOM05D006133 ORTHO05D007855 5.7e-17 92.0 152 32.9
HPP92_006840 Vanilla planifolia HOM05D006133 ORTHO05D007855 7.5e-17 91.7 87 59.8
Gohir.A01G166500 Gossypium hirsutum HOM05D006133 ORTHO05D007855 7.7e-14 81.6 88 56.8
SGA_v2.0_scaffold499G52489 Striga asiatica HOM05D006133 ORTHO05D007855 7.7e-14 81.6 220 32.3
A05p11770 Brassica napus HOM05D006133 ORTHO05D007855 1.0e-13 81.3 95 47.4
Eucgr.B00901 Eucalyptus grandis HOM05D006133 ORTHO05D007855 2.2e-13 80.1 98 48.0
Eucgr.B00955 Eucalyptus grandis HOM05D006133 ORTHO05D007855 8.5e-13 78.2 98 46.9
Prupe.4G042300 Prunus persica HOM05D006133 ORTHO05D007855 1.1e-12 77.8 70 64.3
Eucgr.B00904 Eucalyptus grandis HOM05D006133 ORTHO05D007855 3.2e-12 76.3 181 33.1
Os07g0208801 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 2.7e-11 73.2 72 48.6
BraA05t20121Z Brassica rapa HOM05D006133 ORTHO05D007855 4.0e-10 69.3 79 50.6
Gohir.A11G286823 Gossypium hirsutum HOM05D006133 ORTHO05D007855 3.4e-09 66.2 73 54.8
Eucgr.B00952 Eucalyptus grandis HOM05D006133 ORTHO05D007855 2.8e-08 63.2 91 41.8
TAR636G0634 Trochodendron aralioides HOM05D006133 ORTHO05D007855 3.1e-07 59.7 144 36.1
HPP92_006839 Vanilla planifolia HOM05D006133 ORTHO05D007855 1.2e-06 57.8 59 55.9
C04p15300 Brassica napus HOM05D006133 ORTHO05D007855 1.6e-06 57.4 39 71.8
Zm00001eb131680 Zea mays HOM05D006133 ORTHO05D446205 4.5e-06 55.8 71 39.4
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 4.5e-06 55.8 71 39.4


User provided reference genes

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