Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 5.3e-72 274.2 139 100.0
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 3.5e-23 112.1 134 51.5
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 3.9e-22 108.6 129 51.9
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 6.2e-20 101.3 100 56.0
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 2.0e-18 96.3 100 54.0
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 1.9e-16 89.7 95 53.7
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 5.4e-16 88.2 97 52.6
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 1.2e-15 87.0 96 54.2
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 2.1e-15 86.3 95 49.5
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 2.1e-15 86.3 95 50.5
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 2.7e-15 85.9 95 50.5
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 3.5e-15 85.5 95 50.5
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 4.6e-15 85.1 101 45.5
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 6.0e-15 84.7 95 49.5
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 1.0e-14 84.0 95 49.5
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 1.0e-14 84.0 97 46.4
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 1.0e-14 84.0 95 49.5
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 1.3e-14 83.6 95 50.5
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 1.3e-14 83.6 95 50.5
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 1.3e-14 83.6 95 49.5
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 1.7e-14 83.2 96 44.8
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 1.7e-14 83.2 95 47.4
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 1.7e-14 83.2 95 47.4
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 3.0e-14 82.4 95 48.4
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 3.9e-14 82.0 95 47.4
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 5.1e-14 81.6 95 48.4
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 5.1e-14 81.6 95 45.3
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 8.7e-14 80.9 95 48.4
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 8.7e-14 80.9 95 47.4
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 1.1e-13 80.5 102 45.1
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 1.9e-13 79.7 95 47.4
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.9e-13 79.7 95 47.4
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.9e-13 79.7 95 47.4
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 1.9e-13 79.7 95 47.4
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 3.3e-13 79.0 102 44.1
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 3.3e-13 79.0 95 46.3
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 4.3e-13 78.6 95 46.3
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 7.3e-13 77.8 95 45.3
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 7.3e-13 77.8 95 45.3
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 7.3e-13 77.8 95 47.4
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 9.6e-13 77.4 95 45.3
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 9.6e-13 77.4 95 45.3
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 9.6e-13 77.4 95 45.3
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 9.6e-13 77.4 95 45.3
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 9.6e-13 77.4 129 43.4
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 1.6e-12 76.6 95 45.3
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 1.6e-12 76.6 95 45.3
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 2.1e-12 76.3 95 44.2
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.8e-12 75.9 95 47.4
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 2.8e-12 75.9 95 47.4
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 3.6e-12 75.5 95 46.3
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 3.6e-12 75.5 95 46.3
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 4.8e-12 75.1 93 45.2
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 4.8e-12 75.1 95 43.2
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 6.2e-12 74.7 95 46.3
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 8.1e-12 74.3 96 45.8
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 1.1e-11 73.9 95 44.2
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 1.4e-11 73.6 95 44.2
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.8e-11 73.2 38 89.5
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 1.8e-11 73.2 95 43.2
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 4.0e-11 72.0 95 43.2
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 5.3e-11 71.6 99 42.4
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 5.3e-11 71.6 99 42.4
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 5.3e-11 71.6 95 43.2
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 6.9e-11 71.2 92 43.5
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 6.9e-11 71.2 92 43.5
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 6.9e-11 71.2 92 43.5
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 6.9e-11 71.2 98 41.8
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 1.2e-10 70.5 95 43.2
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 1.2e-10 70.5 97 44.3
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 1.5e-10 70.1 95 43.2
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 1.5e-10 70.1 95 43.2
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 1.5e-10 70.1 95 43.2
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 1.5e-10 70.1 95 43.2
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 1.5e-10 70.1 95 43.2
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 1.5e-10 70.1 95 43.2
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 1.5e-10 70.1 95 43.2
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 1.5e-10 70.1 95 43.2
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 5.8e-10 68.2 114 38.6
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 5.8e-10 68.2 95 41.1
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 7.6e-10 67.8 32 96.9
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 9.9e-10 67.4 94 40.4
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 2.2e-09 66.2 95 41.1
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 2.9e-09 65.9 95 43.2
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 2.9e-09 65.9 92 43.5
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 3.8e-09 65.5 95 42.1
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 3.8e-09 65.5 112 38.4
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 6.4e-09 64.7 96 40.6
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 6.4e-09 64.7 102 40.2
C04p41290 Brassica napus HOM05D006514 ORTHO05D008138 1.9e-08 63.2 36 80.6
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 1.9e-08 63.2 96 42.7
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 3.2e-08 62.4 89 40.4
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 3.2e-08 62.4 31 87.1
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 5.4e-08 61.6 31 83.9
Lalb_Chr13g0293771 Lupinus albus HOM05D006514 ORTHO05D008138 5.4e-08 61.6 29 86.2
Glyma.05G140300 Glycine max HOM05D006514 ORTHO05D008138 7.1e-08 61.2 31 83.9
Medtr7g024350 Medicago truncatula HOM05D006514 ORTHO05D008138 7.1e-08 61.2 46 67.4
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 7.1e-08 61.2 116 34.5
Nitab4.5_0003410g0060 Nicotiana tabacum HOM05D006514 ORTHO05D008138 9.3e-08 60.8 28 92.9
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 9.3e-08 60.8 105 35.2
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 9.3e-08 60.8 51 64.7
Ca_07248_v3 Cicer arietinum L. HOM05D006514 ORTHO05D008138 1.6e-07 60.1 31 83.9
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 2.1e-07 59.7 31 80.6
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 3.5e-07 58.9 58 60.3
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 6.0e-07 58.2 51 60.8
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 6.0e-07 58.2 51 60.8
ATR0733G176 Amborella trichopoda HOM05D006514 ORTHO05D008138 7.9e-07 57.8 65 55.4
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 7.9e-07 57.8 51 58.8
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 7.9e-07 57.8 51 58.8
Lsat_1_v5_gn_1_26540 Lactuca sativa HOM05D006514 ORTHO05D008138 7.9e-07 57.8 32 81.2
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 1.0e-06 57.4 31 83.9
Lalb_Chr11g0074141 Lupinus albus HOM05D006514 ORTHO05D008138 1.0e-06 57.4 53 62.3
CSS0042829 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 2.3e-06 56.2 95 43.2
CSS0047355 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 2.3e-06 56.2 95 43.2
Os07g0447200 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 2.3e-06 56.2 31 74.2
Glyma.08G095700 Glycine max HOM05D006514 ORTHO05D008138 3.0e-06 55.8 49 61.2
Lj4g0001345 Lotus japonicus HOM05D006514 ORTHO05D008138 6.6e-06 54.7 51 58.8
SEGI_00006 Sequoiadendron giganteum HOM05D006514 ORTHO05D008138 8.7e-06 54.3 66 43.9


User provided reference genes

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