Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.2e-245 852.8 447 100.0
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 3.4e-237 824.7 447 96.2
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.1e-235 819.7 447 92.6
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 6.0e-234 813.9 447 94.9
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 3.4e-229 798.1 447 93.1
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 1.2e-197 693.3 451 81.4
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 1.6e-130 470.3 475 63.8
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 1.0e-108 397.9 467 55.7
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 3.3e-91 339.7 466 52.1
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 6.1e-85 318.9 437 49.2
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 2.6e-75 287.0 462 44.4
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 8.2e-74 282.0 443 45.1
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 4.5e-72 276.2 434 44.7
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.0e-71 275.0 459 42.9
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 1.3e-71 274.6 470 41.7
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 2.3e-68 263.8 431 43.6
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 9.7e-67 258.5 438 42.5
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 4.8e-66 256.1 436 43.1
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 4.1e-65 253.1 438 44.7
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 1.2e-64 251.5 462 45.0
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 2.7e-64 250.4 484 41.7
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 2.7e-64 250.4 428 42.8
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 2.9e-63 246.9 461 46.2
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 1.5e-62 244.6 410 45.9
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 1.5e-62 244.6 429 43.6
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 2.5e-62 243.8 438 44.1
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 2.5e-62 243.8 452 40.9
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 4.2e-62 243.0 486 39.3
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 5.5e-62 242.7 459 42.0
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 5.5e-62 242.7 459 42.5
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 7.2e-62 242.3 436 44.7
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 3.0e-60 236.9 438 44.3
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 3.0e-60 236.9 452 40.0
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 1.1e-54 218.4 449 38.8
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 2.1e-53 214.2 440 39.5
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 6.1e-53 212.6 464 39.9
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 6.1e-53 212.6 463 37.1
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 1.2e-51 208.4 453 36.6
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 1.3e-50 204.9 464 37.7
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.7e-50 204.5 220 50.0
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 2.2e-50 204.1 464 37.3
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.1e-49 201.8 467 39.6
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 2.4e-49 200.7 460 37.0
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 3.2e-49 200.3 447 41.4
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 3.5e-48 196.8 371 39.9
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 1.6e-45 188.0 439 35.5
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 3.6e-45 186.8 460 38.7
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 3.6e-45 186.8 440 36.1
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 1.4e-44 184.9 451 37.3
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 1.4e-44 184.9 438 38.8
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 8.9e-44 182.2 397 38.3
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 8.9e-44 182.2 465 37.0
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 1.2e-43 181.8 473 37.8
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 1.7e-42 177.9 465 34.2
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 3.7e-42 176.8 458 33.4
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 3.7e-42 176.8 476 33.4
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 1.4e-41 174.9 460 35.2
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 3.2e-41 173.7 451 36.8
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 1.2e-40 171.8 461 38.0
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 1.6e-40 171.4 463 36.1
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 2.0e-40 171.0 337 40.9
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 3.5e-40 170.2 415 37.8
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 4.6e-40 169.9 477 35.4
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 6.0e-40 169.5 439 34.9
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 7.8e-40 169.1 470 33.8
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 6.6e-39 166.0 455 36.7
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 6.6e-39 166.0 441 37.0
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 8.6e-39 165.6 372 38.7
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 1.1e-38 165.2 457 37.0
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 1.5e-38 164.9 434 35.9
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 1.5e-38 164.9 479 35.3
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 4.3e-38 163.3 466 35.8
CsaV3_4G008420 Cucumis sativus L. HOM05D006105 ORTHO05D006345 4.3e-38 163.3 442 35.1
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 9.5e-38 162.2 443 36.8
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.2e-37 161.8 422 35.8
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 6.2e-37 159.5 390 37.2
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 8.1e-37 159.1 274 40.5
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 3.1e-36 157.1 450 35.1
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 4.0e-36 156.8 467 34.7
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 4.0e-36 156.8 455 34.7
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 6.8e-36 156.0 457 35.7
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 6.8e-36 156.0 442 34.6
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 2.9e-34 150.6 456 35.1
Sed0026435 Sechium edule HOM05D006105 ORTHO05D006345 4.9e-34 149.8 451 35.5
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 6.4e-34 149.4 477 35.0
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 7.1e-33 146.0 451 30.8
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 6.0e-32 142.9 445 33.3
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 7.8e-32 142.5 445 34.4
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 1.3e-31 141.7 433 37.9
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.5e-30 138.3 455 31.4
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 1.5e-30 138.3 481 32.4
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 3.6e-29 133.7 472 33.1
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 4.7e-29 133.3 462 30.7
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 8.1e-29 132.5 433 32.1
Oeu061338.1 Olea europaea HOM05D006105 ORTHO05D006345 1.2e-27 128.6 217 40.1
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 2.0e-27 127.9 289 36.7
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.3e-26 125.2 285 37.5
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 2.2e-26 124.4 362 31.2
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 8.3e-26 122.5 433 30.5
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 1.9e-25 121.3 450 32.4
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 2.4e-25 120.9 448 31.5
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 1.0e-23 115.5 458 29.7
CANSAT35G1552 Cannabis sativa HOM05D006105 ORTHO05D006345 3.0e-23 114.0 447 29.5
Phvul.011G157100 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 3.0e-23 114.0 432 34.7
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 1.1e-22 112.1 325 34.8
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 3.3e-22 110.5 473 30.7
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 3.3e-22 110.5 433 30.0
PGR083G1480 Punica granatum HOM05D006105 ORTHO05D006345 1.6e-21 108.2 446 30.7
VMungo1127G1756 Vigna mungo HOM05D006105 ORTHO05D006345 4.7e-21 106.7 313 35.1
Manes.17G052800 Manihot esculenta HOM05D013066 ORTHO05D010890 2.4e-20 104.4 452 30.5
PGSC0003DMG400012397 Solanum tuberosum HOM05D006105 ORTHO05D006345 4.0e-20 103.6 212 34.9
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 5.2e-20 103.2 450 26.2
Psat5g240600 Pisum sativum HOM05D006105 ORTHO05D006345 1.2e-19 102.1 325 36.3
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 2.0e-19 101.3 226 36.3
Nn1g04330 Nelumbo nucifera HOM05D006105 ORTHO05D006345 1.7e-18 98.2 290 34.8
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 4.2e-17 93.6 340 32.9
Glyma.06G232800 Glycine max HOM05D006105 ORTHO05D006345 9.3e-17 92.4 529 27.4
ECA236G3415 Erigeron canadensis HOM05D006105 ORTHO05D006345 1.6e-16 91.7 208 38.5
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.6e-16 91.7 354 33.6
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 1.6e-16 91.7 428 27.8
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 4.6e-16 90.1 354 33.3
Aqoxy4G00493 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 6.0e-16 89.7 415 30.6
SGA_v2.0_scaffold34G13768 Striga asiatica HOM05D006105 ORTHO05D006345 1.0e-15 89.0 443 27.3
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 3.0e-15 87.4 454 28.9
GSVIVG01021165001 Vitis vinifera HOM05D006105 ORTHO05D006345 9.6e-14 82.4 446 28.9
ATR0602G093 Amborella trichopoda HOM05D006105 ORTHO05D006345 1.6e-13 81.6 450 26.9
TAR627G0886 Trochodendron aralioides HOM05D000157 ORTHO05D006345 3.6e-13 80.5 255 33.7
Sopen10g003350 Solanum pennellii HOM05D016660 ORTHO05D006345 4.8e-13 80.1 217 33.2
Migut.M00751 Erythranthe guttata HOM05D006105 ORTHO05D006345 1.4e-12 78.6 428 27.6
Thecc.06G176400 Theobroma cacao HOM05D013066 ORTHO05D010890 1.8e-12 78.2 470 25.7
Migut.H01972 Erythranthe guttata HOM05D006105 ORTHO05D006345 4.2e-09 67.0 185 29.2
Solyc10g007156.2 Solanum lycopersicum HOM05D016660 ORTHO05D006345 5.4e-09 66.6 191 31.4
HanXRQChr17g0545011 Helianthus annuus HOM05D006105 ORTHO05D006345 3.5e-08 63.9 186 30.6
SEGI_16969 Sequoiadendron giganteum HOM05D016559 ORTHO05D019650 1.0e-07 62.4 309 28.8
Lj6g0011843 Lotus japonicus HOM05D009670 ORTHO05D010890 3.0e-07 60.8 430 27.7
Oeu051102.1 Olea europaea HOM05D006105 ORTHO05D006345 1.5e-06 58.5 95 40.0
Glyma.15G079800 Glycine max HOM05D009670 ORTHO05D010890 7.3e-06 56.2 459 24.6


User provided reference genes

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