Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 5.1e-52 208.0 151 100.0
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 2.2e-18 96.3 94 54.3
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 6.5e-15 84.7 48 81.2
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.5e-15 84.7 48 81.2
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.5e-15 84.7 48 81.2
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.5e-15 84.7 48 81.2
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.5e-15 84.7 48 81.2
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 3.2e-14 82.4 48 79.2
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 4.7e-13 78.6 48 72.9
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 1.4e-12 77.0 48 70.8
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 3.0e-12 75.9 48 68.8
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 4.0e-12 75.5 48 68.8
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 4.0e-12 75.5 48 66.7
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 5.2e-12 75.1 48 68.8
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 5.2e-12 75.1 48 66.7
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 6.7e-12 74.7 48 66.7
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 8.8e-12 74.3 48 66.7
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 8.8e-12 74.3 48 68.8
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 1.5e-11 73.6 48 64.6
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 1.5e-11 73.6 48 66.7
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 2.6e-11 72.8 48 66.7
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 2.6e-11 72.8 48 66.7
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 5.7e-11 71.6 48 62.5
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 5.7e-11 71.6 48 64.6
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 7.5e-11 71.2 48 64.6
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 9.7e-11 70.9 48 62.5
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 9.7e-11 70.9 46 67.4
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 1.7e-10 70.1 48 62.5
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 1.7e-10 70.1 48 62.5
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 3.7e-10 68.9 48 62.5
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.7e-10 68.9 43 67.4
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 6.3e-10 68.2 48 62.5
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 6.3e-10 68.2 48 64.6
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 6.3e-10 68.2 49 65.3
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 8.2e-10 67.8 48 62.5
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 1.1e-09 67.4 48 62.5
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 1.1e-09 67.4 48 62.5
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.1e-09 67.4 45 66.7
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 1.1e-09 67.4 48 60.4
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.1e-09 67.4 48 60.4
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 1.8e-09 66.6 48 60.4
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 2.4e-09 66.2 48 60.4
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 2.4e-09 66.2 49 63.3
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 2.4e-09 66.2 46 63.0
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 3.1e-09 65.9 48 64.6
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 4.1e-09 65.5 45 62.2
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 5.3e-09 65.1 47 66.0
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 5.3e-09 65.1 48 56.2
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 7.0e-09 64.7 43 62.8
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 9.1e-09 64.3 50 60.0
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.6e-08 63.5 45 73.3
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.6e-08 63.5 46 65.2
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 1.6e-08 63.5 47 63.8
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.0e-08 63.2 50 66.0
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 2.0e-08 63.2 49 61.2
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 2.0e-08 63.2 49 61.2
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 2.7e-08 62.8 48 62.5
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 2.7e-08 62.8 45 66.7
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 3.5e-08 62.4 46 65.2
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 4.5e-08 62.0 48 56.2
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 4.5e-08 62.0 46 63.0
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 4.5e-08 62.0 46 63.0
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 4.5e-08 62.0 46 63.0
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 4.5e-08 62.0 46 63.0
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 5.9e-08 61.6 48 60.4
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 7.7e-08 61.2 50 56.0
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 7.7e-08 61.2 46 65.2
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 7.7e-08 61.2 46 65.2
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 7.7e-08 61.2 50 64.0
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 1.3e-07 60.5 48 60.4
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.3e-07 60.5 43 67.4
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.3e-07 60.5 42 61.9
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 1.3e-07 60.5 49 61.2
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 1.3e-07 60.5 45 60.0
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 1.3e-07 60.5 47 61.7
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 1.3e-07 60.5 45 57.8
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 1.7e-07 60.1 46 63.0
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 2.2e-07 59.7 49 57.1
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 2.2e-07 59.7 45 57.8
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 2.2e-07 59.7 49 59.2
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 2.2e-07 59.7 49 59.2
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 2.9e-07 59.3 46 60.9
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 5.0e-07 58.5 46 60.9
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 5.0e-07 58.5 50 60.0
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 5.0e-07 58.5 50 60.0
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 6.5e-07 58.2 46 58.7
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 6.5e-07 58.2 48 52.1
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 1.1e-06 57.4 50 62.0
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.1e-06 57.4 51 54.9
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.1e-06 57.4 51 54.9
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.1e-06 57.4 51 54.9
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.1e-06 57.4 51 54.9
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.1e-06 57.4 51 54.9
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 1.1e-06 57.4 46 58.7
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 1.5e-06 57.0 48 52.1
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.5e-06 57.0 48 52.1
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 1.9e-06 56.6 51 54.9
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 2.5e-06 56.2 48 47.9
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 2.5e-06 56.2 48 50.0
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 2.5e-06 56.2 51 54.9
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 3.2e-06 55.8 48 47.9
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 3.2e-06 55.8 48 47.9
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 3.2e-06 55.8 48 47.9
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 3.2e-06 55.8 48 47.9
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 3.2e-06 55.8 48 47.9
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 3.2e-06 55.8 48 47.9
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 3.2e-06 55.8 48 47.9
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 3.2e-06 55.8 48 47.9
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 3.2e-06 55.8 48 47.9
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 3.2e-06 55.8 49 55.1
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 4.2e-06 55.5 49 53.1
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 4.2e-06 55.5 45 53.3
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 5.5e-06 55.1 46 52.2
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 7.2e-06 54.7 51 52.9


User provided reference genes

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