Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1691 Fragaria x ananassa HOM05D005597 ORTHO05D007304 0.0e+00 1156.0 579 100.0
FAN11G3052 Fragaria x ananassa HOM05D005597 ORTHO05D007304 0.0e+00 1115.5 579 97.1
FvH4_3g18450 Fragaria vesca HOM05D005597 ORTHO05D007304 0.0e+00 1114.4 579 97.1
FAN21G1763 Fragaria x ananassa HOM05D005597 ORTHO05D007304 0.0e+00 1089.3 579 94.5
RcHm_v2.0_Chr5g0031201 Rosa chinensis HOM05D005597 ORTHO05D007304 5.3e-299 1030.4 583 90.1
FAN25G0069 Fragaria x ananassa HOM05D005597 ORTHO05D007304 3.8e-297 1024.2 585 89.6
Prupe.4G166500 Prunus persica HOM05D005597 ORTHO05D007304 5.7e-277 957.2 580 82.6
MD11G1261800 Malus domestica HOM05D005597 ORTHO05D007304 1.3e-276 956.1 582 82.1
MD03G1241900 Malus domestica HOM05D005597 ORTHO05D007304 7.0e-275 950.3 585 82.1
TAR624G0947 Trochodendron aralioides HOM05D005597 ORTHO05D007304 4.0e-270 934.5 578 79.9
arahy.Tifrunner.gnm1.ann1.06PSEJ Arachis hypogaea HOM05D005597 ORTHO05D007304 5.7e-269 930.6 581 78.7
Gorai.013G173400 Gossypium raimondii HOM05D005597 ORTHO05D007304 5.7e-269 930.6 585 78.6
Gohir.A13G149000 Gossypium hirsutum HOM05D005597 ORTHO05D007304 7.5e-269 930.2 585 78.8
arahy.Tifrunner.gnm1.ann1.Z1JPC4 Arachis hypogaea HOM05D005597 ORTHO05D007304 2.2e-268 928.7 581 78.5
PGR083G2138 Punica granatum HOM05D005597 ORTHO05D007304 2.7e-266 921.8 581 78.8
Manes.03G102000 Manihot esculenta HOM05D005597 ORTHO05D007304 3.5e-266 921.4 580 78.8
Thecc.07G110000 Theobroma cacao HOM05D005597 ORTHO05D007304 3.5e-266 921.4 586 78.3
Dinv14987 Davidia involucrata HOM05D005597 ORTHO05D007304 4.5e-266 921.0 576 78.5
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 4.5e-266 921.0 579 78.1
TAR626G0744 Trochodendron aralioides HOM05D005597 ORTHO05D007304 2.2e-265 918.7 579 78.6
TWI39G1070 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 3.8e-265 917.9 581 78.3
QL08p026520 Quercus lobata HOM05D005597 ORTHO05D007304 6.5e-265 917.1 585 77.8
Cfa019573 Carpinus fangiana HOM05D005597 ORTHO05D007304 1.5e-264 916.0 581 78.1
CiPaw.11G160900 Carya illinoinensis HOM05D005597 ORTHO05D007304 1.5e-264 916.0 583 77.4
Atru.chr2.2174 Acer truncatum HOM05D005597 ORTHO05D007304 1.9e-264 915.6 583 76.2
Lj8A149T49 Lonicera japonica HOM05D005597 ORTHO05D007304 1.8e-262 909.1 579 77.4
Duzib213G0141 Durio zibethinus HOM05D005597 ORTHO05D007304 2.3e-262 908.7 588 76.0
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 3.0e-262 908.3 580 76.7
Nn1g09131 Nelumbo nucifera HOM05D005597 ORTHO05D007304 3.0e-262 908.3 579 77.4
Aqoxy1G02067 Aquilegia oxysepala HOM05D005597 ORTHO05D007304 7.5e-261 903.7 582 77.0
Duzib187G0678 Durio zibethinus HOM05D005597 ORTHO05D007304 9.8e-261 903.3 587 76.0
CSS0014594 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 1.7e-260 902.5 577 77.3
COL.COLO4_17568 Corchorus olitorius HOM05D005597 ORTHO05D007304 3.7e-260 901.4 611 74.5
CAN.G162.8 Capsicum annuum HOM05D005597 ORTHO05D007304 4.8e-260 901.0 577 75.7
ClCG11G017480 Citrullus lanatus HOM05D005597 ORTHO05D007304 8.3e-260 900.2 579 76.3
Ca_03990_v3 Cicer arietinum L. HOM05D005597 ORTHO05D007304 3.1e-259 898.3 576 76.7
Rhsim06G0207300 Rhododendron simsii HOM05D005597 ORTHO05D007304 5.4e-259 897.5 580 76.6
CsaV3_4G033140 Cucumis sativus L. HOM05D005597 ORTHO05D007304 1.2e-258 896.3 581 76.1
THA.LOC104812323 Tarenaya hassleriana HOM05D005597 ORTHO05D007304 1.6e-258 896.0 582 75.9
Eucgr.F01228 Eucalyptus grandis HOM05D005597 ORTHO05D007304 7.7e-258 893.6 581 75.9
Hma1.2p1_1016F.1_g248150 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 2.9e-257 891.7 575 76.3
Medtr2g076680 Medicago truncatula HOM05D005597 ORTHO05D007304 3.8e-257 891.3 575 75.8
Potri.011G110800 Populus trichocarpa HOM05D005597 ORTHO05D007304 3.8e-257 891.3 580 76.0
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 1.5e-256 889.4 577 76.4
Lalb_Chr01g0006811 Lupinus albus HOM05D005597 ORTHO05D007304 3.3e-256 888.3 578 75.8
Lj3g0024865 Lotus japonicus HOM05D005597 ORTHO05D007304 1.2e-255 886.3 580 75.2
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 3.6e-255 884.8 577 74.7
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 6.1e-255 884.0 577 74.5
SGA_v2.0_scaffold47G17797 Striga asiatica HOM05D005597 ORTHO05D007304 1.4e-254 882.9 579 74.4
BcaB02g06666 Brassica carinata HOM05D005597 ORTHO05D007304 2.3e-254 882.1 578 74.6
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 5.2e-254 880.9 580 74.1
A06p12800 Brassica napus HOM05D005597 ORTHO05D007304 2.0e-253 879.0 577 74.0
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 2.0e-253 879.0 577 75.9
Migut.H01992 Erythranthe guttata HOM05D005597 ORTHO05D007304 3.4e-253 878.2 578 74.4
PGSC0003DMG400012388 Solanum tuberosum HOM05D005597 ORTHO05D007304 3.4e-253 878.2 579 74.4
BraA06t24441Z Brassica rapa HOM05D005597 ORTHO05D007304 4.4e-253 877.9 577 74.2
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 5.7e-253 877.5 577 74.2
MSTRG.12867 Avicennia marina HOM05D005597 ORTHO05D007304 7.5e-253 877.1 577 74.5
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 7.5e-253 877.1 577 74.4
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 7.5e-253 877.1 577 74.4
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 9.8e-253 876.7 577 74.4
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 9.8e-253 876.7 576 75.3
Sp1g15040 Schrenkiella parvula HOM05D005597 ORTHO05D007304 9.8e-253 876.7 577 74.2
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 1.7e-252 875.9 577 73.8
C05p15120 Brassica napus HOM05D005597 ORTHO05D007304 3.7e-252 874.8 577 73.7
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 4.9e-252 874.4 576 74.0
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 4.9e-252 874.4 586 74.2
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 6.3e-252 874.0 581 74.2
Solyc07g062540.3 Solanum lycopersicum HOM05D005597 ORTHO05D007304 1.1e-251 873.2 579 74.1
PSO500G0209 Papaver somniferum HOM05D005597 ORTHO05D007304 1.8e-251 872.5 581 74.5
PSO675G3712 Papaver somniferum HOM05D005597 ORTHO05D007304 1.8e-251 872.5 581 74.5
MBI07_g03181_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D007304 5.4e-251 870.9 570 76.0
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 7.0e-251 870.5 572 74.0
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 7.0e-251 870.5 564 74.6
Sopen07g030770 Solanum pennellii HOM05D005597 ORTHO05D007304 9.2e-251 870.2 579 73.9
Ciclev10019496m.g Citrus clementina HOM05D005597 ORTHO05D007304 1.2e-250 869.8 582 73.4
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 1.6e-250 869.4 576 74.8
Sed0009860 Sechium edule HOM05D005597 ORTHO05D007304 1.6e-250 869.4 577 75.2
GSVIVG01014208001 Vitis vinifera HOM05D005597 ORTHO05D007304 4.5e-250 867.8 522 80.5
CDE02G4663 Ceratophyllum demersum HOM05D005597 ORTHO05D007304 5.6e-248 860.9 578 72.8
BcaB03g13027 Brassica carinata HOM05D005597 ORTHO05D007304 8.0e-247 857.1 551 74.2
Sabra11G0098300 Salix brachista HOM05D005597 ORTHO05D007304 8.9e-246 853.6 631 69.6
CANSAT35G0471 Cannabis sativa HOM05D005597 ORTHO05D007304 2.2e-244 849.0 540 78.9
AUR62043187 Chenopodium quinoa HOM05D005597 ORTHO05D007304 4.9e-244 847.8 583 72.4
Hund10564 Selenicereus undatus HOM05D005597 ORTHO05D007304 2.4e-243 845.5 567 73.0
ATR0602G238 Amborella trichopoda HOM05D005597 ORTHO05D007304 2.0e-242 842.4 580 72.6
ECA240G4584 Erigeron canadensis HOM05D000832 ORTHO05D000982 1.0e-241 840.1 578 72.3
Lsat_1_v5_gn_9_100260 Lactuca sativa HOM05D005597 ORTHO05D007304 8.6e-241 837.0 579 71.2
Cc05_g11200 Coffea canephora HOM05D005597 ORTHO05D007304 1.1e-240 836.6 522 76.8
HanXRQChr14g0442721 Helianthus annuus HOM05D005597 ORTHO05D007304 4.3e-240 834.7 577 71.6
vmacro11932 Vaccinium macrocarpon HOM05D005597 ORTHO05D007304 8.9e-238 827.0 602 67.8
EL10Ac4g08334 Beta vulgaris HOM05D005597 ORTHO05D007304 7.8e-234 813.9 599 68.3
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 1.1e-232 810.1 568 71.3
Haze_09335 Corylus avellana HOM05D005597 ORTHO05D007304 1.9e-232 809.3 667 65.1
CSS0003229 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 7.3e-232 807.4 574 71.4
unitig_749.g13539 Utricularia gibba HOM05D005597 ORTHO05D007304 8.1e-231 803.9 578 68.0
Os01g0209000 Oryza sativa ssp. japonica HOM05D005597 ORTHO05D007304 1.7e-228 796.2 538 72.3
Zm00001eb120330 Zea mays HOM05D005597 ORTHO05D007304 1.1e-224 783.5 572 68.4
SalBow7G0883 Salvia bowleyana HOM05D005597 ORTHO05D007304 1.2e-221 773.5 506 74.5
HPP92_004052 Vanilla planifolia HOM05D005597 ORTHO05D007304 3.5e-210 735.3 628 61.8
Duzib213G0888 Durio zibethinus HOM05D005597 ORTHO05D007304 5.1e-209 731.5 442 79.2
AUR62019570 Chenopodium quinoa HOM05D005597 ORTHO05D007304 1.5e-205 719.9 581 64.7
Gohir.D13G153500 Gossypium hirsutum HOM05D005597 ORTHO05D007304 3.9e-201 705.3 408 82.1
Peaxi162Scf00069g02235 Petunia axillaris HOM05D005597 ORTHO05D007304 1.1e-200 703.7 437 77.3
MELO3C025637.2 Cucumis melo HOM05D005597 ORTHO05D007304 9.6e-200 700.7 435 77.9
DCAR_013152 Daucus carota HOM05D005597 ORTHO05D007304 1.3e-191 673.7 447 74.0
Hma1.2p1_1016F.1_g248140 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 3.5e-186 655.6 441 75.5
Psat5g238320 Pisum sativum HOM05D005597 ORTHO05D007304 5.7e-184 648.3 436 75.2
Mapoly0059s0091 Marchantia polymorpha HOM05D005597 ORTHO05D007304 6.3e-175 618.2 581 55.1
Sc03g0010510 Simmondsia chinensis HOM05D005597 ORTHO05D007304 8.2e-175 617.8 442 71.0
Ah.06g185290 Amaranthus hybridus HOM05D005597 ORTHO05D007304 7.5e-160 568.2 443 67.7
Dinv18359 Davidia involucrata HOM05D005597 ORTHO05D007304 9.8e-152 541.2 380 75.3
Pp3c6_16240 Physcomitrium patens HOM05D005597 ORTHO05D007304 1.4e-145 520.8 551 50.6
AagrBONN_evm.TU.Sc2ySwM_228.833 Anthoceros agrestis HOM05D005597 ORTHO05D007304 4.9e-143 512.3 586 49.8
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 1.1e-142 511.1 560 49.8
CBR_g38668 Chara braunii HOM05D005597 ORTHO05D007304 5.4e-118 429.1 583 41.2
SHI21382 Sapria himalayana HOM05D005597 ORTHO05D007304 2.7e-117 426.8 390 59.5
Nitab4.5_0001145g0050 Nicotiana tabacum HOM05D005597 ORTHO05D007304 1.9e-91 340.9 288 64.9
SHI21385 Sapria himalayana HOM05D000105 ORTHO05D000023 4.3e-91 339.7 222 70.7
Oeu059263.1 Olea europaea HOM05D005597 ORTHO05D007304 2.1e-90 337.4 387 50.4
Cpa.g.sc97.103 Carica papaya HOM05D005597 ORTHO05D007304 6.2e-90 335.9 213 79.8
Nitab4.5_0000246g0240 Nicotiana tabacum HOM05D005597 ORTHO05D007304 1.2e-85 321.6 594 38.6
SEGI_23731 Sequoiadendron giganteum HOM05D005597 ORTHO05D007304 2.4e-81 307.4 223 64.6
MCO07G083 Micromonas commoda HOM05D005597 ORTHO05D007304 4.2e-70 270.0 614 33.6
PRCOL_00005636 Prasinoderma coloniale HOM05D005597 ORTHO05D007304 1.4e-65 255.0 563 33.4
Gohir.A04G098250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.0e-55 222.2 151 73.5
Gohir.A07G160600 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.3e-55 221.9 148 75.7
Cfa025275 Carpinus fangiana HOM05D005597 ORTHO05D028637 1.6e-53 214.9 558 31.2
Gohir.A03G066250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 6.7e-52 209.5 139 75.5
Actinidia09803 Actinidia chinensis HOM05D005597 ORTHO05D007304 1.2e-48 198.7 126 73.0
Atru.chr2.2170 Acer truncatum HOM05D005597 ORTHO05D007304 3.7e-42 177.2 95 77.9
Lsat_1_v5_gn_9_21740 Lactuca sativa HOM05D005597 ORTHO05D007174 8.5e-39 166.0 124 74.2
COL.COLO4_17572 Corchorus olitorius HOM05D005597 ORTHO05D007304 1.2e-35 155.6 147 60.5
Actinidia24363 Actinidia chinensis HOM05D005597 ORTHO05D007304 1.6e-29 135.2 90 76.7
Nn1g04407 Nelumbo nucifera HOM05D005597 ORTHO05D007304 2.3e-20 104.8 74 63.5
MBI01_g45400_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 2.3e-15 88.2 49 77.6
MBI01_g45631_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 2.3e-15 88.2 62 62.9
Potri.001G392050 Populus trichocarpa HOM05D005597 ORTHO05D007304 1.6e-13 82.0 48 77.1
Lsat_1_v5_gn_3_114580 Lactuca sativa HOM05D002100 ORTHO05D002310 2.7e-08 64.7 67 61.2
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 4.6e-08 63.9 402 25.1
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 2.3e-07 61.6 442 24.7
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 5.6e-06 57.0 330 26.1


User provided reference genes

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