Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1681 Fragaria x ananassa HOM05D001197 ORTHO05D009835 9.5e-71 270.0 131 100.0
FvH4_3g12730 Fragaria vesca HOM05D001197 ORTHO05D009835 1.1e-58 229.9 156 77.6
RcHm_v2.0_Chr5g0020731 Rosa chinensis HOM05D000604 ORTHO05D009835 2.8e-54 215.3 156 72.4
Prupe.4G116100 Prunus persica HOM05D001197 ORTHO05D009835 2.3e-40 169.1 158 58.2
MD10G1228700 Malus domestica HOM05D001197 ORTHO05D009835 4.8e-38 161.4 156 56.4
FAN11G1799 Fragaria x ananassa HOM05D000071 ORTHO05D000029 4.6e-33 144.8 76 92.1
Sed0015035 Sechium edule HOM05D000604 ORTHO05D009835 9.6e-31 137.1 158 48.7
Haze_06158 Corylus avellana HOM05D000604 ORTHO05D009835 1.1e-29 133.7 156 51.9
Cfa000663 Carpinus fangiana HOM05D000604 ORTHO05D009835 3.1e-29 132.1 156 51.3
Thecc.02G005200 Theobroma cacao HOM05D000604 ORTHO05D009835 5.3e-29 131.3 159 50.3
CANSAT35G1438 Cannabis sativa HOM05D000604 ORTHO05D009835 6.9e-29 131.0 161 47.8
Manes.16G052000 Manihot esculenta HOM05D000604 ORTHO05D009835 2.0e-28 129.4 160 48.1
Potri.003G074900 Populus trichocarpa HOM05D001197 ORTHO05D009835 3.4e-28 128.6 137 54.7
Ciclev10016768m.g Citrus clementina HOM05D001197 ORTHO05D009835 9.9e-28 127.1 78 70.5
QL11p012745 Quercus lobata HOM05D000604 ORTHO05D009835 2.9e-27 125.6 161 47.2
Gohir.D01G132200 Gossypium hirsutum HOM05D000604 ORTHO05D009835 6.4e-27 124.4 102 58.8
Gorai.002G163800 Gossypium raimondii HOM05D000604 ORTHO05D009835 6.4e-27 124.4 102 58.8
AL7G33830 Arabidopsis lyrata HOM05D001197 ORTHO05D009835 1.1e-26 123.6 159 45.3
CiPaw.10G062200 Carya illinoinensis HOM05D000604 ORTHO05D009835 1.4e-26 123.2 159 49.1
THA.LOC104811787 Tarenaya hassleriana HOM05D000604 ORTHO05D009835 1.4e-26 123.2 138 50.0
Carub.0007s2110 Capsella rubella HOM05D001197 ORTHO05D009835 1.9e-26 122.9 159 45.3
Gohir.A01G141452 Gossypium hirsutum HOM05D000604 ORTHO05D009835 1.9e-26 122.9 102 57.8
AT4G20030 Arabidopsis thaliana HOM05D001197 ORTHO05D009835 4.2e-26 121.7 159 44.7
Actinidia34691 Actinidia chinensis HOM05D001197 ORTHO05D009835 2.1e-25 119.4 127 49.6
Duzib132G1124 Durio zibethinus HOM05D000604 ORTHO05D009835 4.6e-25 118.2 79 68.4
ClCG01G025560 Citrullus lanatus HOM05D000604 ORTHO05D009835 7.9e-25 117.5 108 54.6
C01p14030 Brassica napus HOM05D001197 ORTHO05D009835 1.0e-24 117.1 159 42.1
BolC1t01370H Brassica oleracea HOM05D001197 ORTHO05D009835 1.0e-24 117.1 159 42.1
CARHR226820 Cardamine hirsuta HOM05D001197 ORTHO05D009835 1.0e-24 117.1 160 43.8
Cpa.g.sc30.128 Carica papaya HOM05D001197 ORTHO05D009835 1.0e-24 117.1 158 44.9
BcaNung03488 Brassica carinata HOM05D001197 ORTHO05D009835 2.3e-24 115.9 159 43.4
BolC7t45572H Brassica oleracea HOM05D001197 ORTHO05D009835 2.3e-24 115.9 159 43.4
Thhalv10026477m.g Eutrema salsugineum HOM05D001197 ORTHO05D009835 3.0e-24 115.5 161 42.9
MELO3C007029.2 Cucumis melo HOM05D000604 ORTHO05D009835 3.9e-24 115.2 108 52.8
Sabra03G0045600 Salix brachista HOM05D001197 ORTHO05D009835 3.9e-24 115.2 79 69.6
BcaC09g51349 Brassica carinata HOM05D001197 ORTHO05D009835 6.7e-24 114.4 159 42.1
Sp7g18490 Schrenkiella parvula HOM05D001197 ORTHO05D009835 6.7e-24 114.4 159 41.5
Atru.chr10.388 Acer truncatum HOM05D000604 ORTHO05D009835 1.9e-23 112.8 87 58.6
A01p11830 Brassica napus HOM05D000604 ORTHO05D009835 4.3e-23 111.7 159 42.1
BcaC06g30641 Brassica carinata HOM05D001197 ORTHO05D009835 5.6e-23 111.3 160 41.9
TAR624G1208 Trochodendron aralioides HOM05D001197 ORTHO05D009835 5.6e-23 111.3 143 48.3
BraA01t01125Z Brassica rapa HOM05D001197 ORTHO05D009835 1.3e-22 110.2 159 41.5
Hma1.2p1_0088F.1_g045050 Hydrangea macrophylla HOM05D001197 ORTHO05D009835 1.6e-22 109.8 130 49.2
Lalb_Chr13g0293541 Lupinus albus HOM05D003377 ORTHO05D009835 6.2e-22 107.8 149 45.6
TWI38G0630 Tripterygium wilfordii HOM05D000604 ORTHO05D009835 1.1e-21 107.1 98 52.0
Dinv31175 Davidia involucrata HOM05D001197 ORTHO05D009835 1.4e-21 106.7 143 46.9
Rhsim02G0169500 Rhododendron simsii HOM05D001197 ORTHO05D009835 2.4e-21 105.9 133 46.6
CsaV3_6G052810 Cucumis sativus L. HOM05D000604 ORTHO05D009835 5.3e-21 104.8 112 49.1
GSVIVG01012134001 Vitis vinifera HOM05D001197 ORTHO05D009835 1.2e-20 103.6 118 49.2
GSVIVG01012135001 Vitis vinifera HOM05D001197 ORTHO05D009835 1.2e-20 103.6 118 49.2
C07p50690 Brassica napus HOM05D001197 ORTHO05D009835 1.5e-20 103.2 186 37.1
CSS0041514 Camellia sinensis var. sinensis HOM05D001197 ORTHO05D009835 1.5e-20 103.2 73 64.4
Aa31LG6G2450 Aethionema arabicum HOM05D001197 ORTHO05D009835 2.6e-20 102.4 186 36.0
Nn7g38294 Nelumbo nucifera HOM05D001197 ORTHO05D009835 5.8e-20 101.3 131 45.8
Peaxi162Scf00199g00924 Petunia axillaris HOM05D001197 ORTHO05D009835 7.6e-20 100.9 132 45.5
ECA238G3853 Erigeron canadensis HOM05D001197 ORTHO05D009835 1.0e-19 100.5 137 45.3
VMungo0251G0867 Vigna mungo HOM05D003377 ORTHO05D009835 1.7e-19 99.8 78 61.5
Nitab4.5_0000443g0150 Nicotiana tabacum HOM05D001197 ORTHO05D009835 2.9e-19 99.0 125 44.0
Cc09_g05400 Coffea canephora HOM05D000604 ORTHO05D009835 6.5e-19 97.8 148 37.2
Nitab4.5_0008708g0030 Nicotiana tabacum HOM05D001197 ORTHO05D009835 6.5e-19 97.8 132 43.2
Lsat_1_v5_gn_2_60840 Lactuca sativa HOM05D001197 ORTHO05D009835 1.1e-18 97.1 119 47.9
Phvul.002G189500 Phaseolus vulgaris HOM05D003377 ORTHO05D009835 2.5e-18 95.9 99 53.5
Lj1C1148T2 Lonicera japonica HOM05D001197 ORTHO05D009835 4.2e-18 95.1 64 68.8
Glyma.08G087800 Glycine max HOM05D003377 ORTHO05D009835 5.5e-18 94.7 129 45.0
Lj4g0013172 Lotus japonicus HOM05D000604 ORTHO05D009835 5.5e-18 94.7 78 60.3
PSO675G3859 Papaver somniferum HOM05D001197 ORTHO05D009835 7.1e-18 94.4 63 66.7
Solyc02g068440.3 Solanum lycopersicum HOM05D001197 ORTHO05D009835 7.1e-18 94.4 122 44.3
FAN11G0074 Fragaria x ananassa HOM05D001197 ORTHO05D009835 9.3e-18 94.0 49 91.8
Sc17g0004160 Simmondsia chinensis HOM05D001197 ORTHO05D009835 9.3e-18 94.0 98 52.0
arahy.Tifrunner.gnm1.ann1.7SD2CW Arachis hypogaea HOM05D000604 ORTHO05D009835 1.2e-17 93.6 81 59.3
arahy.Tifrunner.gnm1.ann1.UN7M5W Arachis hypogaea HOM05D006341 ORTHO05D000377 1.2e-17 93.6 81 59.3
arahy.Tifrunner.gnm1.ann1.UNWS3C Arachis hypogaea HOM05D000604 ORTHO05D009835 1.2e-17 93.6 81 59.3
Sopen02g017580 Solanum pennellii HOM05D001197 ORTHO05D009835 2.1e-17 92.8 122 43.4
Glyma.05G133302 Glycine max HOM05D001197 ORTHO05D009835 2.7e-17 92.4 74 59.5
TPR.G5089 Trifolium pratense HOM05D000604 ORTHO05D009835 2.7e-17 92.4 131 46.6
HanXRQChr14g0440121 Helianthus annuus HOM05D001197 ORTHO05D009835 4.6e-17 91.7 122 44.3
PGR004G0073 Punica granatum HOM05D000604 ORTHO05D009835 3.0e-16 89.0 147 40.8
Eucgr.D00021 Eucalyptus grandis HOM05D003377 ORTHO05D009835 8.7e-16 87.4 61 70.5
CDE11G0746 Ceratophyllum demersum HOM05D000604 ORTHO05D009835 1.5e-15 86.7 130 39.2
PGSC0003DMG400009433 Solanum tuberosum HOM05D001197 ORTHO05D009835 1.9e-15 86.3 74 56.8
Ca_05619_v3 Cicer arietinum L. HOM05D003377 ORTHO05D009835 2.5e-15 85.9 79 59.5
Medtr5g071540 Medicago truncatula HOM05D000604 ORTHO05D009835 3.3e-15 85.5 79 58.2
COL.COLO4_18019 Corchorus olitorius HOM05D000658 ORTHO05D003223 5.7e-15 84.7 63 61.9
vmacro11010 Vaccinium macrocarpon HOM05D001197 ORTHO05D009835 1.3e-14 83.6 62 62.9
FAN25G0663 Fragaria x ananassa HOM05D000071 ORTHO05D000029 2.8e-14 82.4 131 46.6
SGA_v2.0_scaffold51G18673 Striga asiatica HOM05D001197 ORTHO05D009835 4.8e-14 81.6 68 51.5
HPP92_016421 Vanilla planifolia HOM05D000604 ORTHO05D009835 5.3e-13 78.2 63 55.6
HPP92_026369 Vanilla planifolia HOM05D000604 ORTHO05D009835 5.3e-13 78.2 63 55.6
DCAR_001285 Daucus carota HOM05D001197 ORTHO05D009835 1.2e-12 77.0 72 55.6
Psat2g057120 Pisum sativum HOM05D003377 ORTHO05D009835 2.2e-11 72.8 138 41.3
ECA238G2473 Erigeron canadensis HOM05D000142 ORTHO05D000124 2.1e-09 66.2 67 50.7
FAN09G0862 Fragaria x ananassa HOM05D000142 ORTHO05D000124 7.9e-09 64.3 60 50.0
HanXRQChr14g0438411 Helianthus annuus HOM05D000142 ORTHO05D000124 2.3e-08 62.8 106 36.8
FvH4_6g19520 Fragaria vesca HOM05D000142 ORTHO05D000124 3.0e-08 62.4 60 48.3
FAN05G0907 Fragaria x ananassa HOM05D000142 ORTHO05D000124 3.0e-08 62.4 60 48.3
FAN05G1536 Fragaria x ananassa HOM05D002184 ORTHO05D002379 3.0e-08 62.4 60 48.3
FAN14G0241 Fragaria x ananassa HOM05D000142 ORTHO05D000124 3.0e-08 62.4 60 48.3
MSTRG.5866 Avicennia marina HOM05D000142 ORTHO05D000124 3.9e-08 62.0 61 47.5
Atru.chr8.1439 Acer truncatum HOM05D000142 ORTHO05D000124 5.1e-08 61.6 62 46.8
MD14G1031800 Malus domestica HOM05D000142 ORTHO05D000124 5.1e-08 61.6 84 39.3
Nitab4.5_0002036g0010 Nicotiana tabacum HOM05D000142 ORTHO05D000124 5.1e-08 61.6 61 45.9
RcHm_v2.0_Chr3g0474861 Rosa chinensis HOM05D000142 ORTHO05D000124 5.1e-08 61.6 61 45.9
FAN25G2339 Fragaria x ananassa HOM05D000071 ORTHO05D000029 6.7e-08 61.2 50 64.0
QL07p038106 Quercus lobata HOM05D000142 ORTHO05D000124 8.7e-08 60.8 61 44.3
CSS0009420 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D000124 1.1e-07 60.5 61 45.9
Prupe.7G101000 Prunus persica HOM05D000142 ORTHO05D000124 1.1e-07 60.5 84 39.3
TWI53G0104 Tripterygium wilfordii HOM05D000142 ORTHO05D000124 1.1e-07 60.5 61 42.6
MSTRG.19278 Avicennia marina HOM05D000142 ORTHO05D000124 1.5e-07 60.1 128 30.5
Glyma.03G198500 Glycine max HOM05D000142 ORTHO05D000124 1.5e-07 60.1 61 45.9
TPR.G23347 Trifolium pratense HOM05D000142 ORTHO05D000124 1.5e-07 60.1 91 35.2
VMungo1383G0483 Vigna mungo HOM05D000142 ORTHO05D000124 1.5e-07 60.1 85 37.6
CANSAT64G2300 Cannabis sativa HOM05D000142 ORTHO05D000124 1.9e-07 59.7 61 44.3
Oeu047835.2 Olea europaea HOM05D002184 ORTHO05D000124 2.5e-07 59.3 61 42.6
PGSC0003DMG400028248 Solanum tuberosum HOM05D000142 ORTHO05D000124 2.5e-07 59.3 61 45.9
Ah.08g210370 Amaranthus hybridus HOM05D002184 ORTHO05D002379 3.3e-07 58.9 87 37.9
Eucgr.K02572 Eucalyptus grandis HOM05D000142 ORTHO05D000124 3.3e-07 58.9 61 42.6
Manes.09G051700 Manihot esculenta HOM05D000142 ORTHO05D000124 3.3e-07 58.9 73 41.1
ClCG10G018700 Citrullus lanatus HOM05D000142 ORTHO05D000124 4.3e-07 58.5 63 41.3
Duzib093G1727 Durio zibethinus HOM05D000142 ORTHO05D000124 4.3e-07 58.5 60 45.0
Peaxi162Scf00096g00086 Petunia axillaris HOM05D000142 ORTHO05D000124 4.3e-07 58.5 61 45.9
SEGI_02071 Sequoiadendron giganteum HOM05D001197 ORTHO05D000124 4.3e-07 58.5 61 47.5
SEGI_12369 Sequoiadendron giganteum HOM05D001197 ORTHO05D000124 4.3e-07 58.5 61 47.5
Carub.0006s2750 Capsella rubella HOM05D001197 ORTHO05D000124 5.7e-07 58.2 66 42.4
Prupe.5G241100 Prunus persica HOM05D001197 ORTHO05D000124 5.7e-07 58.2 97 38.1
PGR142G1864 Punica granatum HOM05D000142 ORTHO05D000124 5.7e-07 58.2 61 44.3
SGA_v2.0_scaffold318G48478 Striga asiatica HOM05D000142 ORTHO05D000124 5.7e-07 58.2 61 42.6
CARHR206910 Cardamine hirsuta HOM05D000142 ORTHO05D000124 7.4e-07 57.8 61 44.3
Cpa.g.sc104.89 Carica papaya HOM05D000142 ORTHO05D000124 7.4e-07 57.8 61 42.6
Ciclev10012994m.g Citrus clementina HOM05D000142 ORTHO05D000124 7.4e-07 57.8 61 44.3
Dinv08286 Davidia involucrata HOM05D001197 ORTHO05D000124 7.4e-07 57.8 96 37.5
Medtr7g105260 Medicago truncatula HOM05D000142 ORTHO05D000124 7.4e-07 57.8 61 41.0
GSVIVG01033897001 Vitis vinifera HOM05D000142 ORTHO05D000124 7.4e-07 57.8 85 36.5
Lsat_1_v5_gn_2_56381 Lactuca sativa HOM05D000142 ORTHO05D000124 9.7e-07 57.4 61 45.9
Rhsim03G0069800 Rhododendron simsii HOM05D002184 ORTHO05D002379 9.7e-07 57.4 61 44.3
EL10Ac7g16847 Beta vulgaris HOM05D000142 ORTHO05D000124 1.3e-06 57.0 60 50.0
Lj1g0014206 Lotus japonicus HOM05D000142 ORTHO05D000124 1.3e-06 57.0 67 41.8
Phvul.001G192800 Phaseolus vulgaris HOM05D000142 ORTHO05D000124 1.3e-06 57.0 85 35.3
Sabra06G0160400 Salix brachista HOM05D000142 ORTHO05D000124 1.3e-06 57.0 61 45.9
Sopen10g032720 Solanum pennellii HOM05D000142 ORTHO05D000124 1.3e-06 57.0 61 44.3
Aqoxy4G02719 Aquilegia oxysepala HOM05D000142 ORTHO05D000124 1.6e-06 56.6 62 45.2
COL.COLO4_29667 Corchorus olitorius HOM05D000142 ORTHO05D000124 1.6e-06 56.6 61 39.3
Solyc10g083240.2 Solanum lycopersicum HOM05D000142 ORTHO05D000124 1.6e-06 56.6 61 44.3
Carub.0002s1020 Capsella rubella HOM05D001197 ORTHO05D000124 2.2e-06 56.2 66 42.4
Carub.0002s1022 Capsella rubella HOM05D001197 ORTHO05D000124 2.2e-06 56.2 59 44.1
Hma1.2p1_0820F.1_g224080 Hydrangea macrophylla HOM05D000142 ORTHO05D000124 2.2e-06 56.2 61 41.0
MD12G1138600 Malus domestica HOM05D001197 ORTHO05D000124 2.2e-06 56.2 74 39.2
Nn2g14228 Nelumbo nucifera HOM05D000142 ORTHO05D000124 2.2e-06 56.2 61 42.6
THA.LOC104826818 Tarenaya hassleriana HOM05D000142 ORTHO05D000124 2.2e-06 56.2 60 43.3
HPP92_023058 Vanilla planifolia HOM05D000142 ORTHO05D000124 2.2e-06 56.2 116 33.6
CiPaw.09G017600 Carya illinoinensis HOM05D000142 ORTHO05D000124 2.8e-06 55.8 61 41.0
Gorai.006G152700 Gossypium raimondii HOM05D000142 ORTHO05D000124 2.8e-06 55.8 60 43.3
TAR623G0690 Trochodendron aralioides HOM05D000142 ORTHO05D000124 2.8e-06 55.8 61 39.3
HPP92_023018 Vanilla planifolia HOM05D000142 ORTHO05D000124 2.8e-06 55.8 63 42.9
Aa31LG11G7170 Aethionema arabicum HOM05D000142 ORTHO05D000124 3.7e-06 55.5 69 39.1
arahy.Tifrunner.gnm1.ann1.S43GAM Arachis hypogaea HOM05D000142 ORTHO05D000124 3.7e-06 55.5 61 41.0
BolC2t09159H Brassica oleracea HOM05D001197 ORTHO05D000124 3.7e-06 55.5 77 36.4
Potri.006G208500 Populus trichocarpa HOM05D000142 ORTHO05D000124 3.7e-06 55.5 61 44.3
vmacro07433 Vaccinium macrocarpon HOM05D000142 ORTHO05D000124 3.7e-06 55.5 61 45.9
Aa31LG4G3740 Aethionema arabicum HOM05D001197 ORTHO05D000124 4.8e-06 55.1 91 38.5
CANSAT01G2455 Cannabis sativa HOM05D001197 ORTHO05D000124 4.8e-06 55.1 85 37.6
Carub.0002s2027 Capsella rubella HOM05D001197 ORTHO05D000124 4.8e-06 55.1 59 42.4
Cpa.g.sc21.60 Carica papaya HOM05D001197 ORTHO05D000124 4.8e-06 55.1 53 43.4
MELO3C001961.2 Cucumis melo HOM05D001197 ORTHO05D000124 4.8e-06 55.1 57 42.1
Duzib128G2013 Durio zibethinus HOM05D000142 ORTHO05D000124 4.8e-06 55.1 60 43.3
SalBow3G4272 Salvia bowleyana HOM05D000142 ORTHO05D000124 4.8e-06 55.1 62 41.9
Sc07g0005660 Simmondsia chinensis HOM05D000142 ORTHO05D000124 4.8e-06 55.1 85 35.3
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 6.3e-06 54.7 45 53.3
CsaV3_3G037530 Cucumis sativus L. HOM05D000142 ORTHO05D000124 6.3e-06 54.7 63 39.7
Migut.J00999 Erythranthe guttata HOM05D000142 ORTHO05D000124 6.3e-06 54.7 61 39.3
Hma1.2p1_0493F.1_g165030 Hydrangea macrophylla HOM05D001197 ORTHO05D000124 6.3e-06 54.7 73 38.4
BcaB05g21679 Brassica carinata HOM05D000142 ORTHO05D000124 8.2e-06 54.3 65 44.6
C02p31160 Brassica napus HOM05D001197 ORTHO05D000124 8.2e-06 54.3 77 36.4
Thhalv10019191m.g Eutrema salsugineum HOM05D001197 ORTHO05D000124 8.2e-06 54.3 98 36.7
MD06G1236600 Malus domestica HOM05D001197 ORTHO05D000124 8.2e-06 54.3 104 34.6


User provided reference genes

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