Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 7.8e-289 996.5 531 100.0
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 4.4e-260 901.0 493 98.6
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 2.1e-241 839.0 462 98.5
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 3.6e-201 705.3 443 88.7
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 6.1e-201 704.5 463 86.2
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 8.3e-190 667.5 445 85.6
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 4.9e-142 508.8 477 61.6
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 2.1e-137 493.4 351 84.0
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 6.9e-136 488.4 352 83.8
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 4.0e-128 462.6 463 58.5
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 5.5e-125 452.2 472 56.1
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 3.3e-122 443.0 463 56.2
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 8.2e-121 438.3 467 55.0
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 1.1e-117 427.9 468 54.5
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 4.6e-116 422.5 473 54.1
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.3e-114 416.4 465 51.6
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 7.7e-111 405.2 464 53.0
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 1.7e-110 404.1 463 52.5
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 1.9e-109 400.6 464 52.8
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 2.1e-108 397.1 467 51.2
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 1.4e-107 394.4 467 56.5
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 8.8e-107 391.7 463 52.1
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 1.3e-105 387.9 463 52.1
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 1.8e-104 384.0 466 49.4
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 1.1e-101 374.8 464 50.4
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 5.5e-101 372.5 446 51.8
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 1.0e-99 368.2 464 51.5
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.4e-99 367.9 464 48.9
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 2.3e-99 367.1 332 61.4
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 3.9e-99 366.3 466 48.9
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 5.2e-99 365.9 479 48.0
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 1.5e-98 364.4 462 48.9
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 2.0e-98 364.0 508 48.0
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 2.6e-98 363.6 403 54.8
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 1.3e-97 361.3 465 49.2
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.7e-97 360.9 464 48.5
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 9.1e-96 355.1 465 48.8
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 2.0e-95 354.0 482 47.1
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 1.3e-94 351.3 463 50.1
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 2.2e-94 350.5 464 49.1
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 1.9e-93 347.4 470 48.9
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 2.5e-93 347.1 464 46.6
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 5.5e-93 345.9 411 51.3
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 9.4e-93 345.1 471 47.3
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 9.4e-93 345.1 466 49.8
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 9.4e-93 345.1 467 49.5
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 8.0e-92 342.0 465 47.7
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 1.0e-91 341.7 468 47.4
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 3.0e-91 340.1 292 64.7
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 4.0e-91 339.7 467 46.9
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 5.2e-91 339.3 468 46.2
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 4.4e-90 336.3 464 46.1
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 7.5e-90 335.5 464 47.6
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 1.3e-89 334.7 466 46.4
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 3.7e-89 333.2 464 47.4
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 5.9e-87 325.9 472 46.0
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 1.1e-85 321.6 467 45.4
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 1.9e-85 320.9 471 47.3
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 1.8e-83 314.3 467 45.2
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 3.0e-83 313.5 465 44.3
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 1.2e-82 311.6 467 44.5
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 1.5e-82 311.2 425 46.6
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 7.5e-82 308.9 466 43.8
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 9.8e-82 308.5 469 43.9
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.7e-81 307.8 466 43.6
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 2.8e-81 307.0 469 44.3
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 1.4e-80 304.7 464 44.2
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.8e-80 304.3 467 46.7
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 4.1e-80 303.1 470 44.3
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 7.0e-80 302.4 467 44.1
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 1.6e-79 301.2 462 43.7
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 3.5e-79 300.1 465 44.1
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 2.9e-78 297.0 468 45.1
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 3.8e-78 296.6 469 45.4
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 3.2e-77 293.5 466 44.0
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 1.6e-76 291.2 474 44.5
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 6.1e-76 289.3 464 41.4
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 1.8e-75 287.7 464 41.2
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 2.3e-75 287.3 508 40.0
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 4.0e-75 286.6 468 42.3
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 6.8e-75 285.8 464 42.7
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 6.8e-75 285.8 465 43.9
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 3.4e-74 283.5 464 42.7
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 4.4e-74 283.1 466 41.8
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 1.7e-73 281.2 464 41.2
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 1.1e-72 278.5 466 42.9
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 3.1e-72 276.9 512 40.4
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 4.1e-72 276.6 414 46.1
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 1.2e-71 275.0 471 42.3
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 5.9e-71 272.7 362 50.8
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 2.3e-70 270.8 464 39.7
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 6.6e-70 269.2 468 40.6
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 1.5e-69 268.1 448 41.5
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 1.9e-69 267.7 464 40.9
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 4.3e-69 266.5 467 40.7
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.8e-67 261.2 272 57.0
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 1.8e-67 261.2 464 39.4
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 3.0e-67 260.4 465 37.8
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 3.0e-67 260.4 468 39.5
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 1.4e-64 251.5 276 54.7
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 2.4e-64 250.8 465 38.9
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 5.0e-62 243.0 478 36.4
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 1.9e-61 241.1 463 37.6
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 4.3e-61 240.0 463 37.6
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 6.2e-60 236.1 465 38.3
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 1.0e-59 235.3 466 38.6
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 3.1e-59 233.8 463 38.2
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 4.4e-58 229.9 427 40.3
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 6.0e-55 219.5 470 38.5
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 6.2e-52 209.5 476 37.6
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 1.5e-50 204.9 446 36.5
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 1.5e-50 204.9 446 36.5
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 1.3e-49 201.8 474 35.2
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 2.3e-46 191.0 289 42.6
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 2.7e-39 167.5 355 38.3
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 4.4e-34 150.2 263 39.5
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 5.4e-32 143.3 486 28.6
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 6.0e-31 139.8 380 36.1
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 1.3e-30 138.7 269 38.3
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 1.4e-24 118.6 232 39.2
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 1.8e-22 111.7 315 32.7
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 1.3e-20 105.5 212 37.7
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 4.8e-20 103.6 148 37.8
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 1.1e-19 102.4 240 35.4
RcHm_v2.0_Chr2g0102431 Rosa chinensis HOM05D002452 ORTHO05D006766 4.5e-18 97.1 130 50.0
FvH4_3g18102 Fragaria vesca HOM05D003130 ORTHO05D003547 7.6e-18 96.3 46 100.0
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 1.1e-16 92.4 200 38.5
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 4.2e-16 90.5 130 43.1
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 2.1e-15 88.2 127 44.9
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 6.7e-14 83.2 102 50.0
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 6.7e-14 83.2 102 50.0
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 6.7e-14 83.2 102 50.0
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 6.7e-14 83.2 102 50.0
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 6.7e-14 83.2 102 50.0
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 6.7e-14 83.2 102 50.0
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 9.6e-13 79.3 119 42.0
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 6.9e-11 73.2 203 32.0
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 6.9e-11 73.2 69 55.1
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 7.6e-10 69.7 99 33.3
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 2.9e-09 67.8 61 60.7
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 6.0e-07 60.1 34 82.4
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 8.7e-06 56.2 210 27.6


User provided reference genes

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