Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1652 Fragaria x ananassa HOM05D007449 ORTHO05D009504 8.0e-106 387.1 196 100.0
FAN21G0170 Fragaria x ananassa HOM05D007449 ORTHO05D009504 6.8e-89 330.9 188 91.0
FAN11G1945 Fragaria x ananassa HOM05D007449 ORTHO05D009504 7.0e-86 320.9 164 97.6
FvH4_3g13790 Fragaria vesca HOM05D007449 ORTHO05D009504 5.6e-83 311.2 164 95.7
RcHm_v2.0_Chr5g0022981 Rosa chinensis HOM05D007449 ORTHO05D009504 5.8e-80 301.2 164 92.1
Dinv42450 Davidia involucrata HOM05D007449 ORTHO05D009504 2.6e-72 275.8 160 81.9
Prupe.4G124700 Prunus persica HOM05D007449 ORTHO05D009504 2.6e-72 275.8 155 87.7
MD05G1240900 Malus domestica HOM05D007449 ORTHO05D009504 2.4e-70 269.2 153 86.9
ClCG02G018850 Citrullus lanatus HOM05D007449 ORTHO05D009504 2.1e-69 266.2 159 80.5
Glyma.15G266900 Glycine max HOM05D007449 ORTHO05D009504 4.6e-69 265.0 157 80.3
GSVIVG01036691001 Vitis vinifera HOM05D007449 ORTHO05D009504 1.7e-68 263.1 156 82.7
Glyma.08G160000 Glycine max HOM05D007449 ORTHO05D009504 5.0e-68 261.5 157 79.6
ECA236G3627 Erigeron canadensis HOM05D007449 ORTHO05D009504 1.5e-67 260.0 168 76.2
MELO3C019608.2 Cucumis melo HOM05D007449 ORTHO05D009504 1.9e-67 259.6 181 71.8
CANSAT56G2387 Cannabis sativa HOM05D007449 ORTHO05D009504 5.6e-67 258.1 153 81.7
Sed0001463 Sechium edule HOM05D007449 ORTHO05D009504 7.3e-67 257.7 161 80.1
CsaV3_6G013330 Cucumis sativus L. HOM05D007449 ORTHO05D009504 1.2e-66 256.9 154 81.8
HanXRQChr11g0335831 Helianthus annuus HOM05D007449 ORTHO05D009504 1.2e-66 256.9 153 79.1
arahy.Tifrunner.gnm1.ann1.4RN51I Arachis hypogaea HOM05D007449 ORTHO05D009504 1.6e-66 256.5 161 75.8
arahy.Tifrunner.gnm1.ann1.VWXD6N Arachis hypogaea HOM05D007449 ORTHO05D009504 1.6e-66 256.5 161 75.8
Lsat_1_v5_gn_7_111001 Lactuca sativa HOM05D007449 ORTHO05D009504 1.8e-65 253.1 158 76.6
Sabra10G0135300 Salix brachista HOM05D007449 ORTHO05D009504 3.1e-65 252.3 154 77.9
THA.LOC104812400 Tarenaya hassleriana HOM05D007449 ORTHO05D009504 5.2e-65 251.5 164 73.2
Nn1g09860 Nelumbo nucifera HOM05D007449 ORTHO05D009504 1.2e-64 250.4 163 75.5
CSS0049228 Camellia sinensis var. sinensis HOM05D007449 ORTHO05D009504 1.5e-64 250.0 153 75.2
Hma1.2p1_1417F.1_g282110 Hydrangea macrophylla HOM05D007449 ORTHO05D009504 2.6e-64 249.2 166 74.7
Potri.010G175600 Populus trichocarpa HOM05D007449 ORTHO05D009504 2.6e-64 249.2 154 77.3
CiPaw.15G111100 Carya illinoinensis HOM05D007449 ORTHO05D009504 3.4e-64 248.8 154 77.3
COL.COLO4_32270 Corchorus olitorius HOM05D007449 ORTHO05D009504 4.4e-64 248.4 158 75.9
Ciclev10006094m.g Citrus clementina HOM05D007449 ORTHO05D009504 7.5e-64 247.7 163 74.8
CDE02G1458 Ceratophyllum demersum HOM05D001125 ORTHO05D003189 1.7e-63 246.5 175 69.7
Medtr1g046590 Medicago truncatula HOM05D007449 ORTHO05D009504 1.7e-63 246.5 157 75.2
Rhsim10G0133000 Rhododendron simsii HOM05D007449 ORTHO05D009504 2.2e-63 246.1 194 66.0
Aqoxy5G02136 Aquilegia oxysepala HOM05D007449 ORTHO05D009504 4.9e-63 245.0 162 72.8
MBI02_g42634_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 4.9e-63 245.0 154 77.9
Psat6g047080 Pisum sativum HOM05D007449 ORTHO05D009504 8.3e-63 244.2 155 74.8
Cfa017774 Carpinus fangiana HOM05D007449 ORTHO05D009504 1.9e-62 243.0 152 77.0
Lalb_Chr01g0015631 Lupinus albus HOM05D007449 ORTHO05D009504 1.9e-62 243.0 159 73.0
Atru.chr1.9 Acer truncatum HOM05D007449 ORTHO05D009504 2.4e-62 242.7 153 75.8
SEGI_20644 Sequoiadendron giganteum HOM05D007449 ORTHO05D009504 2.4e-62 242.7 161 72.0
Duzib213G0878 Durio zibethinus HOM05D007449 ORTHO05D009504 1.6e-61 240.0 161 70.8
Manes.16G050159 Manihot esculenta HOM05D007449 ORTHO05D009504 2.7e-61 239.2 154 75.3
TAR629G0115 Trochodendron aralioides HOM05D007449 ORTHO05D009504 1.0e-60 237.3 195 62.6
Peaxi162Scf00124g01733 Petunia axillaris HOM05D007449 ORTHO05D009504 1.3e-60 236.9 166 68.7
Oeu002792.1 Olea europaea HOM05D007449 ORTHO05D009775 2.3e-60 236.1 183 64.5
TPR.G11303 Trifolium pratense HOM05D007449 ORTHO05D009504 3.0e-60 235.7 167 69.5
Migut.H01650 Erythranthe guttata HOM05D007449 ORTHO05D009504 3.9e-60 235.3 166 68.7
HPP92_008133 Vanilla planifolia HOM05D007449 ORTHO05D009504 3.9e-60 235.3 156 74.4
Os01g0679600 Oryza sativa ssp. japonica HOM05D007449 ORTHO05D009504 5.1e-60 235.0 164 68.3
Gohir.A13G127500 Gossypium hirsutum HOM05D007449 ORTHO05D009504 8.6e-60 234.2 164 67.1
HPP92_008185 Vanilla planifolia HOM05D007449 ORTHO05D009504 8.6e-60 234.2 156 73.7
Gohir.D13G131200 Gossypium hirsutum HOM05D007449 ORTHO05D009504 2.5e-59 232.6 164 66.5
TWI38G0722 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 2.5e-59 232.6 166 67.5
TWI38G2117 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 2.5e-59 232.6 166 67.5
Solyc11g011610.2 Solanum lycopersicum HOM05D007449 ORTHO05D009504 3.3e-59 232.3 153 72.5
MSTRG.13092 Avicennia marina HOM05D007449 ORTHO05D009504 4.3e-59 231.9 164 67.7
PGSC0003DMG400013314 Solanum tuberosum HOM05D007449 ORTHO05D009504 7.3e-59 231.1 153 72.5
SGA_v2.0_scaffold49G18211 Striga asiatica HOM05D007449 ORTHO05D009504 7.3e-59 231.1 154 72.1
ATR0109G018 Amborella trichopoda HOM05D007449 ORTHO05D009504 9.5e-59 230.7 159 71.1
vmacro12790 Vaccinium macrocarpon HOM05D007449 ORTHO05D009504 9.5e-59 230.7 234 53.8
Zm00001eb156770 Zea mays HOM05D007449 ORTHO05D009504 9.5e-59 230.7 157 68.8
Gorai.013G147200 Gossypium raimondii HOM05D007449 ORTHO05D009504 1.6e-58 229.9 164 65.9
Nitab4.5_0006598g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 2.1e-58 229.6 154 71.4
Nitab4.5_0005124g0020 Nicotiana tabacum HOM05D007449 ORTHO05D009504 3.6e-58 228.8 153 71.2
CAN.G222.124 Capsicum annuum HOM05D007449 ORTHO05D009504 4.7e-58 228.4 153 72.5
Solyc11g011620.3 Solanum lycopersicum HOM05D007449 ORTHO05D009504 4.7e-58 228.4 151 72.2
Sopen11g006460 Solanum pennellii HOM05D007449 ORTHO05D009504 4.7e-58 228.4 153 71.9
Cc08_g13080 Coffea canephora HOM05D007449 ORTHO05D009504 8.1e-58 227.6 163 69.3
Thhalv10019230m.g Eutrema salsugineum HOM05D007449 ORTHO05D009504 8.1e-58 227.6 167 68.3
AT1G79260 Arabidopsis thaliana HOM05D007449 ORTHO05D009504 5.2e-57 224.9 155 71.0
Carub.0002s2613 Capsella rubella HOM05D007449 ORTHO05D009504 6.8e-57 224.6 158 71.5
Nitab4.5_0001438g0030 Nicotiana tabacum HOM05D007449 ORTHO05D009504 1.2e-56 223.8 153 69.3
C02p36470 Brassica napus HOM05D007449 ORTHO05D009504 1.5e-56 223.4 159 67.3
BcaC03g15880 Brassica carinata HOM05D007449 ORTHO05D009504 2.0e-56 223.0 159 67.3
Sp5g34340 Schrenkiella parvula HOM05D007449 ORTHO05D009504 3.4e-56 222.2 155 70.3
BraA02t07273Z Brassica rapa HOM05D007449 ORTHO05D009504 5.8e-56 221.5 159 67.3
BcaB05g25191 Brassica carinata HOM05D007449 ORTHO05D009504 9.9e-56 220.7 159 67.3
PGR031G0327 Punica granatum HOM05D007449 ORTHO05D009504 9.9e-56 220.7 167 67.1
BolC2t09646H Brassica oleracea HOM05D007449 ORTHO05D009504 1.3e-55 220.3 159 66.0
A02p22730 Brassica napus HOM05D007449 ORTHO05D009504 4.9e-55 218.4 159 66.7
Actinidia33338 Actinidia chinensis HOM05D007449 ORTHO05D009504 1.9e-54 216.5 133 78.2
Aa31LG4G1730 Aethionema arabicum HOM05D007449 ORTHO05D009504 1.9e-54 216.5 176 61.9
Phvul.005G043600 Phaseolus vulgaris HOM05D007449 ORTHO05D009504 2.4e-54 216.1 159 67.3
arahy.Tifrunner.gnm1.ann1.FIRH26 Arachis hypogaea HOM05D007449 ORTHO05D009504 7.8e-53 211.1 125 78.4
AL2G39860 Arabidopsis lyrata HOM05D007449 ORTHO05D009504 1.0e-52 210.7 158 67.1
FAN25G3406 Fragaria x ananassa HOM05D007449 ORTHO05D009504 3.0e-52 209.1 108 98.1
SMO364G0724 Selaginella moellendorffii HOM05D007449 ORTHO05D009504 3.9e-52 208.8 157 65.6
AagrBONN_evm.TU.Sc2ySwM_362.2319 Anthoceros agrestis HOM05D007449 ORTHO05D009504 6.6e-52 208.0 152 65.1
QL04p096242 Quercus lobata HOM05D007449 ORTHO05D009504 6.2e-50 201.4 115 81.7
QL04p096050 Quercus lobata HOM05D007449 ORTHO05D009504 1.4e-49 200.3 114 81.6
Eucgr.F04482 Eucalyptus grandis HOM05D007449 ORTHO05D009504 2.2e-47 193.0 151 61.6
Haze_18462 Corylus avellana HOM05D007449 ORTHO05D009504 3.8e-47 192.2 114 78.1
Mapoly0054s0111 Marchantia polymorpha HOM05D007449 ORTHO05D009504 4.9e-47 191.8 193 52.8
Nitab4.5_0009898g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 1.9e-43 179.9 153 61.4
Pp3c6_12570 Physcomitrium patens HOM05D007449 ORTHO05D009504 1.3e-42 177.2 117 69.2
Ca_03327_v3 Cicer arietinum L. HOM05D007449 ORTHO05D009504 1.7e-39 166.8 110 75.5
DCAR_013701 Daucus carota HOM05D007449 ORTHO05D009504 1.1e-38 164.1 92 79.3
MBI02_g17887_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 1.9e-38 163.3 154 61.0
Lj2A6T27 Lonicera japonica HOM05D007449 ORTHO05D009504 2.4e-38 162.9 90 85.6
Nitab4.5_0001650g0100 Nicotiana tabacum HOM05D000057 ORTHO05D000021 3.7e-26 122.5 119 54.6
Aa31LG4G1740 Aethionema arabicum HOM05D007449 ORTHO05D009504 1.7e-23 113.6 158 39.9
Nitab4.5_0007284g0070 Nicotiana tabacum HOM05D000057 ORTHO05D000021 3.3e-19 99.4 98 55.1
TPR.G35695 Trifolium pratense HOM05D000290 ORTHO05D044376 9.0e-17 91.3 111 51.4
MBI02_g30541_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 7.9e-13 78.2 81 59.3
Glyma.14G034600 Glycine max HOM05D007449 ORTHO05D009504 2.5e-11 73.2 51 58.8
Gohir.D03G088000 Gossypium hirsutum HOM05D007449 ORTHO05D000032 7.4e-11 71.6 67 53.7


User provided reference genes

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