Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 3.8e-109 398.3 214 100.0
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.6e-107 392.9 214 98.6
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 3.5e-107 391.7 214 98.1
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 3.3e-105 385.2 217 96.3
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 5.6e-105 384.4 214 91.1
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 1.0e-77 293.9 215 70.2
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 4.2e-76 288.5 215 67.9
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.4e-74 283.5 229 70.3
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 9.1e-71 270.8 191 66.0
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 4.5e-70 268.5 207 64.7
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 3.0e-66 255.8 178 78.7
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 1.5e-65 253.4 178 78.1
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 4.8e-64 248.4 209 59.8
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 2.4e-63 246.1 216 57.4
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 3.5e-62 242.3 210 59.5
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 3.5e-62 242.3 208 59.1
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 7.7e-62 241.1 185 63.2
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 1.3e-61 240.4 185 63.2
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 1.5e-60 236.9 188 62.2
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 1.9e-60 236.5 188 61.7
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 9.4e-60 234.2 188 60.6
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 1.2e-59 233.8 186 62.9
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 2.1e-59 233.0 214 57.5
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 2.1e-59 233.0 195 62.1
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 6.1e-59 231.5 203 59.1
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 2.3e-58 229.6 178 61.2
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 6.8e-58 228.0 215 54.4
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 6.8e-58 228.0 200 62.5
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 7.5e-57 224.6 201 56.2
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 1.3e-56 223.8 215 55.3
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 1.1e-55 220.7 184 58.2
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 1.8e-55 219.9 212 55.7
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 5.4e-55 218.4 207 50.7
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 9.1e-55 217.6 207 50.2
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 1.2e-54 217.2 181 57.5
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 2.7e-54 216.1 189 56.6
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 4.5e-54 215.3 207 55.1
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 5.0e-53 211.8 213 50.7
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 8.5e-53 211.1 212 49.5
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 1.9e-52 209.9 183 57.9
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 1.9e-52 209.9 194 57.7
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 2.5e-52 209.5 216 51.9
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 9.4e-52 207.6 213 46.5
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 1.6e-51 206.8 184 58.2
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 6.1e-51 204.9 185 54.6
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 5.2e-50 201.8 214 45.3
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 6.8e-50 201.4 181 55.2
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 7.5e-49 198.0 201 50.7
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 9.8e-49 197.6 182 55.5
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 2.2e-48 196.4 187 54.5
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 3.7e-48 195.7 216 50.0
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 6.3e-48 194.9 289 40.5
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 8.3e-48 194.5 187 55.1
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 2.4e-47 193.0 221 49.3
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 3.1e-47 192.6 185 55.1
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 2.0e-46 189.9 189 51.9
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 4.5e-46 188.7 210 50.0
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 5.9e-46 188.3 185 53.5
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 5.9e-46 188.3 213 43.2
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 1.0e-45 187.6 219 48.4
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 1.0e-45 187.6 184 48.9
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 2.9e-45 186.0 184 48.4
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 2.9e-45 186.0 191 50.3
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 3.8e-45 185.7 210 50.0
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 6.6e-45 184.9 204 46.6
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 5.6e-44 181.8 190 51.1
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 7.3e-44 181.4 190 50.5
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 3.6e-43 179.1 216 45.8
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 4.7e-43 178.7 211 48.3
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 6.1e-43 178.3 189 50.3
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 8.0e-43 177.9 195 50.3
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 1.8e-42 176.8 187 48.7
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 3.0e-42 176.0 222 45.0
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 5.2e-42 175.3 191 48.2
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 2.0e-41 173.3 188 50.0
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 2.0e-41 173.3 188 51.1
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 2.6e-41 172.9 169 55.6
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 2.6e-41 172.9 188 50.5
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 3.4e-41 172.6 183 49.2
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 5.7e-41 171.8 187 47.1
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 7.5e-41 171.4 183 49.2
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 7.5e-41 171.4 183 49.2
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 1.7e-40 170.2 188 48.9
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 1.7e-40 170.2 188 50.0
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 1.7e-40 170.2 188 50.0
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 2.9e-40 169.5 188 49.5
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 2.9e-40 169.5 195 47.7
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 2.9e-40 169.5 183 47.5
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 2.9e-40 169.5 182 49.5
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 3.7e-40 169.1 188 48.9
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 3.7e-40 169.1 188 48.9
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 3.7e-40 169.1 188 48.9
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 4.9e-40 168.7 188 49.5
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 4.9e-40 168.7 188 50.0
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 6.4e-40 168.3 216 43.1
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 1.9e-36 156.8 206 45.1
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 2.8e-35 152.9 179 44.7
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 1.0e-34 151.0 189 46.6
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 1.5e-33 147.1 195 43.6
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 2.0e-30 136.7 168 44.6
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 2.7e-30 136.3 131 51.1
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 1.5e-28 130.6 132 50.0
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 3.1e-26 122.9 188 41.5
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 4.0e-26 122.5 188 39.9
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 1.2e-25 120.9 194 39.7
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 1.7e-24 117.1 188 39.9
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 2.2e-24 116.7 121 48.8
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 4.9e-24 115.5 85 65.9
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 8.3e-24 114.8 105 52.4
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 2.7e-22 109.8 84 61.9
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 2.7e-22 109.8 109 51.4
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 2.8e-19 99.8 195 35.4
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 2.0e-17 93.6 129 38.0
FAN07G0931 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.3e-13 80.9 173 39.9
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 2.3e-13 80.1 135 37.8
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 7.3e-12 75.1 88 47.7
GSVIVG01021310001 Vitis vinifera HOM05D006968 ORTHO05D008748 3.1e-10 69.7 63 55.6
SGA_v2.0_scaffold305G47958 Striga asiatica HOM05D000046 ORTHO05D405780 4.0e-10 69.3 54 57.4
SGA_v2.0_scaffold36G14429 Striga asiatica HOM05D003154 ORTHO05D003565 1.3e-08 64.3 52 53.8
Haze_05450 Corylus avellana HOM05D006968 ORTHO05D164033 3.8e-08 62.8 56 51.8


User provided reference genes

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