Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1498 Fragaria x ananassa HOM05D002105 ORTHO05D001271 5.7e-65 250.8 125 100.0
FAN16G0257 Fragaria x ananassa HOM05D002105 ORTHO05D001271 8.2e-64 246.9 122 100.0
FAN21G0480 Fragaria x ananassa HOM05D002105 ORTHO05D001271 1.8e-63 245.7 123 98.4
FvH4_3g19880 Fragaria vesca HOM05D002105 ORTHO05D001271 1.2e-62 243.0 123 96.7
FAN11G1959 Fragaria x ananassa HOM05D002105 ORTHO05D001271 1.2e-62 243.0 123 96.7
FAN25G0802 Fragaria x ananassa HOM05D002105 ORTHO05D001271 2.9e-61 238.4 123 95.9
RcHm_v2.0_Chr5g0033561 Rosa chinensis HOM05D002105 ORTHO05D001271 4.5e-54 214.5 124 85.5
MD11G1247800 Malus domestica HOM05D002105 ORTHO05D001271 2.3e-42 175.6 122 68.0
CiPaw.12G118700 Carya illinoinensis HOM05D002105 ORTHO05D001271 3.7e-40 168.3 125 65.6
Prupe.4G180600 Prunus persica HOM05D002105 ORTHO05D001271 3.1e-39 165.2 122 66.4
CiPaw.11G170100 Carya illinoinensis HOM05D002105 ORTHO05D001271 2.0e-38 162.5 126 62.7
CANSAT56G3600 Cannabis sativa HOM05D002105 ORTHO05D001271 8.6e-37 157.1 126 59.5
Haze_09432 Corylus avellana HOM05D001020 ORTHO05D001137 8.6e-37 157.1 127 62.2
Cfa020580 Carpinus fangiana HOM05D002105 ORTHO05D001271 1.5e-36 156.4 126 61.9
QL08p022033 Quercus lobata HOM05D002105 ORTHO05D001271 1.9e-36 156.0 128 60.9
GSVIVG01014330001 Vitis vinifera HOM05D002105 ORTHO05D001271 1.9e-36 156.0 126 60.3
Sabra11G0104100 Salix brachista HOM05D002105 ORTHO05D001271 1.5e-33 146.4 126 58.7
Sed0026326 Sechium edule HOM05D002105 ORTHO05D001271 5.7e-33 144.4 127 56.7
Potri.011G119700 Populus trichocarpa HOM05D002105 ORTHO05D001271 3.7e-32 141.7 126 56.3
CsaV3_4G033670 Cucumis sativus L. HOM05D002105 ORTHO05D001271 4.1e-31 138.3 122 54.9
Sabra16G0261900 Salix brachista HOM05D002105 ORTHO05D001271 4.1e-31 138.3 126 57.1
MELO3C016696.2 Cucumis melo HOM05D002105 ORTHO05D001271 5.4e-31 137.9 122 54.9
Lalb_Chr25g0286341 Lupinus albus HOM05D002105 ORTHO05D001271 5.4e-31 137.9 126 56.3
Potri.001G399400 Populus trichocarpa HOM05D002105 ORTHO05D001271 1.2e-30 136.7 126 55.6
Glyma.06G240500 Glycine max HOM05D002105 ORTHO05D001271 1.6e-30 136.3 125 56.8
Sed0025666 Sechium edule HOM05D002105 ORTHO05D001271 2.7e-30 135.6 126 55.6
Dinv20177 Davidia involucrata HOM05D002105 ORTHO05D001271 3.5e-30 135.2 128 57.0
Medtr2g085330 Medicago truncatula HOM05D002105 ORTHO05D001271 4.5e-30 134.8 126 56.3
RcHm_v2.0_Chr4g0413651 Rosa chinensis HOM05D002105 ORTHO05D001271 7.8e-30 134.0 73 89.0
ClCG11G018050 Citrullus lanatus HOM05D002105 ORTHO05D001271 1.0e-29 133.7 125 53.6
TWI38G1694 Tripterygium wilfordii HOM05D002105 ORTHO05D001271 1.3e-29 133.3 126 57.1
Sc03g0010070 Simmondsia chinensis HOM05D002105 ORTHO05D001271 2.3e-29 132.5 124 55.6
Psat5g243840 Pisum sativum HOM05D002105 ORTHO05D001271 3.8e-29 131.7 126 55.6
Ca_01848_v3 Cicer arietinum L. HOM05D002105 ORTHO05D001271 5.0e-29 131.3 126 55.6
Dinv03896 Davidia involucrata HOM05D002105 ORTHO05D001271 8.6e-29 130.6 128 54.7
Dinv04301 Davidia involucrata HOM05D002105 ORTHO05D001271 8.6e-29 130.6 128 54.7
TAR626G1709 Trochodendron aralioides HOM05D002105 ORTHO05D001271 8.6e-29 130.6 127 54.3
TWI39G0142 Tripterygium wilfordii HOM05D002105 ORTHO05D001271 1.1e-28 130.2 126 54.8
Duzib170G0794 Durio zibethinus HOM05D002105 ORTHO05D001271 2.5e-28 129.0 126 54.0
Hma1.2p1_0531F.1_g173370 Hydrangea macrophylla HOM05D002105 ORTHO05D001271 2.5e-28 129.0 127 55.1
Lalb_Chr20g0109631 Lupinus albus HOM05D002105 ORTHO05D001271 2.5e-28 129.0 126 55.6
VMungo1080G0407 Vigna mungo HOM05D002105 ORTHO05D001271 5.6e-28 127.9 126 54.0
arahy.Tifrunner.gnm1.ann1.Y2CVLD Arachis hypogaea HOM05D002105 ORTHO05D001271 7.3e-28 127.5 126 54.0
Glyma.12G224800 Glycine max HOM05D002105 ORTHO05D001271 7.3e-28 127.5 127 53.5
Glyma.13G276500 Glycine max HOM05D002105 ORTHO05D001271 7.3e-28 127.5 125 52.0
Thecc.07G090000 Theobroma cacao HOM05D002105 ORTHO05D001271 7.3e-28 127.5 126 54.8
Phvul.005G072500 Phaseolus vulgaris HOM05D002105 ORTHO05D001271 9.5e-28 127.1 126 53.2
Lj3g0009937 Lotus japonicus HOM05D002105 ORTHO05D001271 1.2e-27 126.7 129 55.0
Lj3g0008045 Lotus japonicus HOM05D002105 ORTHO05D001271 1.6e-27 126.3 126 52.4
arahy.Tifrunner.gnm1.ann1.FLJ2SC Arachis hypogaea HOM05D002105 ORTHO05D001271 2.1e-27 125.9 126 53.2
TPR.G39006 Trifolium pratense HOM05D002105 ORTHO05D001271 2.8e-27 125.6 126 53.2
CSS0030542 Camellia sinensis var. sinensis HOM05D002105 ORTHO05D001271 3.6e-27 125.2 127 52.0
Cc05_g11980 Coffea canephora HOM05D002105 ORTHO05D001271 6.1e-27 124.4 124 56.5
Nitab4.5_0001336g0080 Nicotiana tabacum HOM05D002105 ORTHO05D001271 8.0e-27 124.0 121 56.2
CAN.G162.54 Capsicum annuum HOM05D002105 ORTHO05D001271 1.4e-26 123.2 122 52.5
Manes.15G087400 Manihot esculenta HOM05D002105 ORTHO05D001271 1.4e-26 123.2 123 53.7
Gohir.D13G150900 Gossypium hirsutum HOM05D002105 ORTHO05D001271 2.3e-26 122.5 126 52.4
Gorai.013G168900 Gossypium raimondii HOM05D002105 ORTHO05D001271 2.3e-26 122.5 126 51.6
PGSC0003DMG400012445 Solanum tuberosum HOM05D002105 ORTHO05D001271 2.3e-26 122.5 124 55.6
Gohir.A13G146000 Gossypium hirsutum HOM05D002105 ORTHO05D001271 3.0e-26 122.1 126 52.4
Sopen07g031290 Solanum pennellii HOM05D002105 ORTHO05D001271 6.8e-26 120.9 124 54.0
Nitab4.5_0001241g0060 Nicotiana tabacum HOM05D002105 ORTHO05D001271 8.9e-26 120.6 121 55.4
Gohir.A04G030600 Gossypium hirsutum HOM05D002105 ORTHO05D001271 2.6e-25 119.0 124 48.4
VMungo1127G2095 Vigna mungo HOM05D002105 ORTHO05D001271 2.6e-25 119.0 126 49.2
Lj1C842G6 Lonicera japonica HOM05D002105 ORTHO05D001271 7.5e-25 117.5 99 58.6
Aa31LG5G10020 Aethionema arabicum HOM05D002105 ORTHO05D001271 1.7e-24 116.3 126 48.4
PSO675G3374 Papaver somniferum HOM05D002105 ORTHO05D001271 1.7e-24 116.3 126 50.8
Gorai.009G387800 Gossypium raimondii HOM05D002105 ORTHO05D001271 2.2e-24 115.9 124 48.4
Hma1.2p1_0898F.1_g234450 Hydrangea macrophylla HOM05D002105 ORTHO05D001271 2.9e-24 115.5 98 62.2
Hma1.2p1_0898F.1_g234460 Hydrangea macrophylla HOM05D002105 ORTHO05D001271 2.9e-24 115.5 98 62.2
CSS0012512 Camellia sinensis var. sinensis HOM05D002105 ORTHO05D001271 3.7e-24 115.2 127 49.6
Gorai.009G386800 Gossypium raimondii HOM05D002105 ORTHO05D001271 3.7e-24 115.2 124 47.6
CSS0000814 Camellia sinensis var. sinensis HOM05D002105 ORTHO05D001271 4.9e-24 114.8 128 50.0
Ciclev10008004m.g Citrus clementina HOM05D002105 ORTHO05D001271 6.4e-24 114.4 119 49.6
THA.LOC104813390 Tarenaya hassleriana HOM05D002105 ORTHO05D001271 6.4e-24 114.4 123 49.6
Aqoxy1G02397 Aquilegia oxysepala HOM05D002105 ORTHO05D001271 1.1e-23 113.6 130 50.0
Eucgr.F03313 Eucalyptus grandis HOM05D002105 ORTHO05D001271 1.1e-23 113.6 123 45.5
Cpa.g.sc80.67 Carica papaya HOM05D002105 ORTHO05D001271 1.4e-23 113.2 126 46.0
Eucgr.F01145 Eucalyptus grandis HOM05D002105 ORTHO05D001271 1.9e-23 112.8 126 48.4
Gohir.D05G355100 Gossypium hirsutum HOM05D002105 ORTHO05D001271 3.2e-23 112.1 124 47.6
PSO541G4007 Papaver somniferum HOM05D002105 ORTHO05D001271 3.2e-23 112.1 126 48.4
COL.COLO4_27176 Corchorus olitorius HOM05D002105 ORTHO05D001271 4.1e-23 111.7 98 57.1
Gohir.D05G355175 Gossypium hirsutum HOM05D002105 ORTHO05D001271 5.4e-23 111.3 124 46.8
arahy.Tifrunner.gnm1.ann1.92S0K9 Arachis hypogaea HOM05D002105 ORTHO05D001271 1.6e-22 109.8 127 44.1
Gohir.D05G355400 Gossypium hirsutum HOM05D002105 ORTHO05D001271 1.6e-22 109.8 124 46.8
Peaxi162Scf00069g01513 Petunia axillaris HOM05D002105 ORTHO05D001271 1.6e-22 109.8 125 49.6
A01p18720 Brassica napus HOM05D002105 ORTHO05D001271 2.7e-22 109.0 126 48.4
Cc00_g07940 Coffea canephora HOM05D002105 ORTHO05D001271 2.7e-22 109.0 89 60.7
Thhalv10027051m.g Eutrema salsugineum HOM05D002105 ORTHO05D001271 2.7e-22 109.0 127 48.8
arahy.Tifrunner.gnm1.ann1.E3CL15 Arachis hypogaea HOM05D002105 ORTHO05D001271 6.0e-22 107.8 127 43.3
Manes.03G109600 Manihot esculenta HOM05D002105 ORTHO05D001271 6.0e-22 107.8 123 48.8
Phvul.011G158400 Phaseolus vulgaris HOM05D002105 ORTHO05D001271 7.8e-22 107.5 134 47.0
Gohir.D01G049800 Gossypium hirsutum HOM05D002105 ORTHO05D001271 1.0e-21 107.1 126 45.2
Gohir.D05G354300 Gossypium hirsutum HOM05D002105 ORTHO05D001271 1.0e-21 107.1 97 52.6
MBI07_g30189_MAGBIO Magnolia biondii HOM05D002105 ORTHO05D001271 1.7e-21 106.3 129 47.3
THA.LOC104811864 Tarenaya hassleriana HOM05D002105 ORTHO05D001271 2.3e-21 105.9 128 46.9
Sp7g25440 Schrenkiella parvula HOM05D002105 ORTHO05D001271 3.9e-21 105.1 127 47.2
Rhsim04G0021400 Rhododendron simsii HOM05D002105 ORTHO05D001271 5.0e-21 104.8 103 49.5
Gohir.A01G063400 Gossypium hirsutum HOM05D002105 ORTHO05D001271 6.6e-21 104.4 98 51.0
vmacro09530 Vaccinium macrocarpon HOM05D002105 ORTHO05D001271 6.6e-21 104.4 103 51.5
BcaC07g38285 Brassica carinata HOM05D002105 ORTHO05D001271 1.1e-20 103.6 129 47.3
C08p10310 Brassica napus HOM05D002105 ORTHO05D001271 1.1e-20 103.6 129 47.3
BolC8t48712H Brassica oleracea HOM05D002105 ORTHO05D001271 1.1e-20 103.6 129 47.3
Gorai.002G069700 Gossypium raimondii HOM05D002105 ORTHO05D001271 1.5e-20 103.2 98 51.0
Nitab4.5_0002383g0030 Nicotiana tabacum HOM05D002105 ORTHO05D001271 1.5e-20 103.2 124 45.2
Solyc12g013860.2 Solanum lycopersicum HOM05D002105 ORTHO05D001271 1.5e-20 103.2 111 48.6
Sopen12g007180 Solanum pennellii HOM05D002105 ORTHO05D001271 1.5e-20 103.2 111 48.6
DCAR_019557 Daucus carota HOM05D002105 ORTHO05D001271 1.9e-20 102.8 125 46.4
Nitab4.5_0000332g0070 Nicotiana tabacum HOM05D002105 ORTHO05D001271 1.9e-20 102.8 105 52.4
Gohir.A02G039900 Gossypium hirsutum HOM05D002105 ORTHO05D001271 2.5e-20 102.4 112 44.6
Nitab4.5_0009292g0010 Nicotiana tabacum HOM05D002105 ORTHO05D001271 5.6e-20 101.3 103 52.4
AT4G27500 Arabidopsis thaliana HOM05D002105 ORTHO05D001271 7.3e-20 100.9 128 44.5
Migut.M00803 Erythranthe guttata HOM05D002105 ORTHO05D001271 7.3e-20 100.9 87 60.9
Hund22838 Selenicereus undatus HOM05D002105 ORTHO05D001271 7.3e-20 100.9 125 46.4
CAN.G213.8 Capsicum annuum HOM05D002105 ORTHO05D001271 1.6e-19 99.8 110 48.2
Lj8A155G95 Lonicera japonica HOM05D002105 ORTHO05D001271 2.8e-19 99.0 129 43.4
Medtr4g132200 Medicago truncatula HOM05D002105 ORTHO05D001271 2.8e-19 99.0 97 53.6
SalBow7G4171 Salvia bowleyana HOM05D002105 ORTHO05D001271 2.8e-19 99.0 86 57.0
AL7G25270 Arabidopsis lyrata HOM05D002105 ORTHO05D001271 6.2e-19 97.8 128 46.9
Peaxi162Scf00000g03512 Petunia axillaris HOM05D002105 ORTHO05D001271 1.1e-18 97.1 108 48.1
Carub.0007s1335 Capsella rubella HOM05D002105 ORTHO05D001271 1.8e-18 96.3 120 49.2
HPP92_024062 Vanilla planifolia HOM05D002105 ORTHO05D001271 3.1e-18 95.5 71 60.6
Thhalv10013033m.g Eutrema salsugineum HOM05D002105 ORTHO05D001271 5.2e-18 94.7 116 44.0
TAR624G0920 Trochodendron aralioides HOM05D002105 ORTHO05D001271 8.9e-18 94.0 66 65.2
Dinv00351 Davidia involucrata HOM05D002105 ORTHO05D001271 1.5e-17 93.2 111 47.7
SGA_v2.0_scaffold73G24261 Striga asiatica HOM05D002105 ORTHO05D001271 1.5e-17 93.2 103 52.4
CDE08G0095 Ceratophyllum demersum HOM05D002105 ORTHO05D001271 2.6e-17 92.4 81 55.6
HPP92_028219 Vanilla planifolia HOM05D002105 ORTHO05D001271 2.6e-17 92.4 71 59.2
Aa31LG3G10110 Aethionema arabicum HOM05D002105 ORTHO05D001271 5.8e-17 91.3 118 44.1
Oeu051068.1 Olea europaea HOM05D002105 ORTHO05D001271 5.8e-17 91.3 88 50.0
PGR083G2752 Punica granatum HOM05D002105 ORTHO05D001271 7.5e-17 90.9 124 42.7
EL10Ac4g08186 Beta vulgaris HOM05D002105 ORTHO05D001271 1.7e-16 89.7 127 44.1
BraA08t34001Z Brassica rapa HOM05D002105 ORTHO05D001271 2.9e-16 89.0 126 42.9
AUR62019432 Chenopodium quinoa HOM05D002105 ORTHO05D001271 2.9e-16 89.0 111 45.9
BcaNung07240 Brassica carinata HOM05D002105 ORTHO05D001271 3.7e-16 88.6 104 45.2
BcaNung07301 Brassica carinata HOM05D002105 ORTHO05D001271 3.7e-16 88.6 104 45.2
A08p20450 Brassica napus HOM05D002105 ORTHO05D001271 3.7e-16 88.6 126 43.7
AUR62039203 Chenopodium quinoa HOM05D002105 ORTHO05D001271 3.7e-16 88.6 111 45.9
CDE02G4245 Ceratophyllum demersum HOM05D002105 ORTHO05D001271 4.9e-16 88.2 123 43.9
TAR627G1018 Trochodendron aralioides HOM05D002105 ORTHO05D001271 4.9e-16 88.2 94 52.1
DCAR_020991 Daucus carota HOM05D002105 ORTHO05D001271 8.3e-16 87.4 109 48.6
Lalb_Chr19g0134181 Lupinus albus HOM05D002105 ORTHO05D001271 1.9e-15 86.3 119 41.2
A03p57320 Brassica napus HOM05D002105 ORTHO05D001271 2.4e-15 85.9 126 42.1
CARHR235180 Cardamine hirsuta HOM05D002105 ORTHO05D001271 2.4e-15 85.9 132 42.4
ATR0737G090 Amborella trichopoda HOM05D002105 ORTHO05D001271 3.2e-15 85.5 126 44.4
Lalb_Chr03g0030641 Lupinus albus HOM05D002105 ORTHO05D001271 7.0e-15 84.3 125 40.0
BcaB03g12536 Brassica carinata HOM05D002105 ORTHO05D001271 9.2e-15 84.0 127 40.9
BraA03t14798Z Brassica rapa HOM05D002105 ORTHO05D001271 9.2e-15 84.0 126 41.3
Oeu019314.1 Olea europaea HOM05D002105 ORTHO05D001271 1.6e-14 83.2 76 52.6
SGA_v2.0_scaffold34G13814 Striga asiatica HOM05D002105 ORTHO05D001271 1.6e-14 83.2 93 51.6
unitig_747.g21572 Utricularia gibba HOM05D002105 ORTHO05D001271 2.1e-14 82.8 81 50.6
Oeu005407.1 Olea europaea HOM05D002105 ORTHO05D001271 2.7e-14 82.4 116 43.1
VMungo0251G0394 Vigna mungo HOM05D002105 ORTHO05D001271 2.7e-14 82.4 69 53.6
BolC7t46031H Brassica oleracea HOM05D002105 ORTHO05D001271 3.5e-14 82.0 126 40.5
Oeu024909.1 Olea europaea HOM05D002105 ORTHO05D001271 3.5e-14 82.0 86 46.5
Os08g0390000 Oryza sativa ssp. japonica HOM05D002105 ORTHO05D001271 3.5e-14 82.0 60 63.3
Zm00001eb310480 Zea mays HOM05D002105 ORTHO05D001271 1.0e-13 80.5 123 39.8
BcaC06g32686 Brassica carinata HOM05D002105 ORTHO05D001271 1.7e-13 79.7 66 56.1
C07p55520 Brassica napus HOM05D002105 ORTHO05D001271 1.7e-13 79.7 66 56.1
Zm00001eb098450 Zea mays HOM05D002105 ORTHO05D001271 1.7e-13 79.7 123 39.8
ECA240G0380 Erigeron canadensis HOM05D002105 ORTHO05D001271 2.3e-13 79.3 97 46.4
HanXRQChr13g0389181 Helianthus annuus HOM05D002105 ORTHO05D001271 2.3e-13 79.3 96 45.8
HanXRQChr13g0389191 Helianthus annuus HOM05D002105 ORTHO05D001271 2.3e-13 79.3 96 45.8
SEGI_21183 Sequoiadendron giganteum HOM05D002105 ORTHO05D001271 2.3e-13 79.3 81 45.7
SEGI_30217 Sequoiadendron giganteum HOM05D002105 ORTHO05D001271 2.3e-13 79.3 81 45.7
Sp6g15880 Schrenkiella parvula HOM05D002105 ORTHO05D001271 3.0e-13 79.0 103 43.7
Os09g0346400 Oryza sativa ssp. japonica HOM05D002105 ORTHO05D001271 6.6e-13 77.8 124 39.5
Migut.H01943 Erythranthe guttata HOM05D002105 ORTHO05D001271 4.3e-12 75.1 100 43.0
C01p23680 Brassica napus HOM05D002105 ORTHO05D001271 1.2e-11 73.6 94 44.7
Lsat_1_v5_gn_9_97981 Lactuca sativa HOM05D002105 ORTHO05D001271 2.1e-11 72.8 101 40.6
BraA01t01818Z Brassica rapa HOM05D002105 ORTHO05D001271 2.8e-11 72.4 122 39.3
THA.LOC104818081 Tarenaya hassleriana HOM05D002105 ORTHO05D001271 9.9e-09 63.9 82 42.7
Gorai.009G386100 Gossypium raimondii HOM05D002105 ORTHO05D001271 6.4e-08 61.2 97 40.2
PGR031G0680 Punica granatum HOM05D002105 ORTHO05D001271 6.4e-08 61.2 132 35.6
SHI21648 Sapria himalayana HOM05D002105 ORTHO05D001271 1.1e-07 60.5 97 36.1
THA.LOC104810465 Tarenaya hassleriana HOM05D002105 ORTHO05D001271 4.1e-07 58.5 60 43.3
Ah.04g164820 Amaranthus hybridus HOM05D002105 ORTHO05D001271 5.4e-07 58.2 124 37.9


User provided reference genes

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