Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.6e-144 516.2 273 100.0
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 3.5e-99 365.5 235 84.3
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.5e-91 339.0 235 79.1
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 5.5e-89 331.6 235 77.9
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 5.5e-89 331.6 235 77.9
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.8e-76 290.0 153 95.4
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.2e-76 289.3 153 95.4
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 1.3e-74 283.9 236 68.2
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.9e-73 280.0 237 67.1
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 2.5e-73 279.6 236 66.1
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 1.2e-72 277.3 235 65.5
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.0e-71 274.2 235 64.7
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.8e-71 273.5 237 66.2
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 2.3e-71 273.1 236 65.3
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 5.2e-71 271.9 237 65.8
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 1.2e-70 270.8 235 63.8
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 2.0e-70 270.0 237 65.4
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 2.0e-70 270.0 235 63.8
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 8.3e-69 264.6 235 61.7
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 1.9e-68 263.5 252 60.7
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 7.0e-68 261.5 156 84.0
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 1.2e-67 260.8 156 84.6
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 3.5e-67 259.2 235 61.7
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 4.6e-67 258.8 244 60.7
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 7.8e-67 258.1 236 62.7
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 7.8e-67 258.1 236 62.7
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.0e-66 257.7 235 62.1
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 1.7e-66 256.9 249 60.2
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 1.7e-66 256.9 234 61.1
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 2.3e-66 256.5 230 62.2
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 3.0e-66 256.1 236 62.3
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 5.0e-66 255.4 237 61.6
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 5.0e-66 255.4 235 60.4
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 6.6e-66 255.0 236 60.6
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 3.3e-65 252.7 234 60.7
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 4.3e-65 252.3 239 60.7
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.2e-64 250.8 236 61.0
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 1.6e-64 250.4 228 59.2
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 1.6e-64 250.4 149 83.2
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 1.6e-64 250.4 238 60.9
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 2.1e-64 250.0 235 59.6
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 2.1e-64 250.0 208 63.9
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 3.6e-64 249.2 236 60.2
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 4.7e-64 248.8 236 59.3
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 4.7e-64 248.8 236 60.2
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 6.2e-64 248.4 215 61.4
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 6.2e-64 248.4 236 60.2
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 6.2e-64 248.4 235 57.9
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 8.0e-64 248.1 202 65.3
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 8.0e-64 248.1 255 54.9
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.8e-63 246.9 208 64.4
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.8e-63 246.9 208 64.4
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 1.8e-63 246.9 147 80.3
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 2.3e-63 246.5 168 73.8
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 2.3e-63 246.5 236 59.7
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 3.1e-63 246.1 149 81.9
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 3.1e-63 246.1 233 58.4
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 4.0e-63 245.7 161 73.3
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 4.0e-63 245.7 235 60.4
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 5.2e-63 245.4 236 58.1
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 5.2e-63 245.4 235 59.1
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 8.9e-63 244.6 145 82.8
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 5.8e-62 241.9 236 57.6
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 5.8e-62 241.9 237 59.5
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 7.5e-62 241.5 238 58.8
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 9.8e-62 241.1 235 56.6
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 3.7e-61 239.2 201 62.2
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 3.7e-61 239.2 147 77.6
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 3.7e-61 239.2 237 57.8
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 4.9e-61 238.8 238 58.4
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 4.9e-61 238.8 235 57.9
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 4.9e-61 238.8 184 67.9
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 8.3e-61 238.0 147 76.9
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 1.4e-60 237.3 254 56.7
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 1.4e-60 237.3 145 80.7
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 1.4e-60 237.3 236 58.1
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 1.9e-60 236.9 145 80.0
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.9e-60 236.9 160 76.2
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 2.4e-60 236.5 141 82.3
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 2.4e-60 236.5 150 80.0
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 2.4e-60 236.5 235 57.4
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 3.2e-60 236.1 164 72.6
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 3.2e-60 236.1 241 56.4
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 4.1e-60 235.7 153 75.2
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 5.4e-60 235.3 145 79.3
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 7.1e-60 235.0 150 78.7
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 7.1e-60 235.0 149 79.2
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 1.2e-59 234.2 176 71.6
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 1.6e-59 233.8 159 75.5
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 1.6e-59 233.8 156 73.7
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 2.1e-59 233.4 147 76.9
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 2.1e-59 233.4 145 78.6
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 2.1e-59 233.4 145 78.6
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 7.8e-59 231.5 245 55.9
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 7.8e-59 231.5 149 77.2
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.3e-58 230.7 235 56.6
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 1.7e-58 230.3 235 55.7
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 3.9e-58 229.2 240 55.8
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 3.9e-58 229.2 147 74.8
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 5.1e-58 228.8 235 55.3
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 8.6e-58 228.0 156 72.4
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 1.5e-57 227.3 148 75.0
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 1.9e-57 226.9 146 74.0
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 2.8e-56 223.0 151 75.5
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 3.6e-56 222.6 149 75.8
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 4.7e-56 222.2 245 53.9
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 4.0e-55 219.2 151 73.5
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 4.0e-55 219.2 151 73.5
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 6.8e-55 218.4 254 53.1
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.2e-54 217.6 235 51.1
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 1.2e-54 217.6 235 55.7
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 1.5e-54 217.2 234 55.6
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 4.4e-54 215.7 161 69.6
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 7.5e-54 214.9 229 53.3
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 9.9e-54 214.5 235 54.9
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 2.9e-53 213.0 237 53.6
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 3.7e-53 212.6 235 52.3
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.6e-51 207.2 148 66.2
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 2.7e-51 206.5 251 52.2
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 2.7e-51 206.5 251 52.2
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 6.0e-51 205.3 149 67.8
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 1.0e-50 204.5 123 82.1
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 3.0e-50 203.0 207 55.1
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 3.0e-50 203.0 125 79.2
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 3.0e-50 203.0 148 64.9
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 3.0e-50 203.0 143 70.6
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 8.6e-50 201.4 256 51.6
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 1.1e-49 201.1 139 71.9
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 2.1e-48 196.8 251 50.2
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 4.7e-48 195.7 148 64.2
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.4e-47 194.1 225 52.4
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.4e-47 194.1 235 50.6
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 4.0e-47 192.6 123 78.0
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 4.4e-46 189.1 201 55.7
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 5.8e-46 188.7 143 65.0
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 7.6e-46 188.3 189 58.2
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 2.9e-45 186.4 150 64.0
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 1.1e-44 184.5 148 60.1
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 1.9e-44 183.7 143 67.1
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 3.2e-44 183.0 189 54.5
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 4.2e-44 182.6 160 60.0
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 7.8e-43 178.3 150 65.3
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 1.3e-42 177.6 112 79.5
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 2.5e-41 173.3 220 48.6
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 9.6e-41 171.4 106 82.1
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 2.2e-37 160.2 96 80.2
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 3.8e-37 159.5 198 48.0
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 3.2e-36 156.4 178 53.4
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 4.3e-33 146.0 89 79.8
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 9.6e-33 144.8 92 77.2
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 6.9e-31 138.7 82 82.9
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 5.8e-30 135.6 127 62.2
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 8.4e-29 131.7 152 53.9
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 9.6e-25 118.2 150 48.7
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.5e-22 110.9 97 56.7
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 6.5e-21 105.5 143 41.3
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 3.9e-18 96.3 63 73.0
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.3e-13 81.3 68 63.2
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 1.3e-13 81.3 175 30.3
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 2.9e-13 80.1 77 58.4
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 1.1e-09 68.2 116 36.2
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 3.3e-09 66.6 87 48.3
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 1.2e-06 58.2 32 78.1


User provided reference genes

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