Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.3e-147 524.6 266 100.0
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.1e-133 479.2 266 91.4
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 3.0e-132 475.3 266 91.0
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 3.0e-132 475.3 266 91.0
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 3.9e-132 474.9 266 90.2
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 5.9e-128 461.1 266 89.8
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 1.3e-122 443.4 254 89.4
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 2.8e-122 442.2 270 83.7
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 2.7e-96 355.9 302 63.6
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 4.3e-94 348.6 290 65.9
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 2.2e-90 336.3 290 63.4
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 2.6e-83 312.8 304 59.5
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 1.4e-81 307.0 304 56.2
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 1.2e-77 293.9 302 56.6
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 4.7e-77 292.0 303 56.8
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 3.1e-76 289.3 303 55.4
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 5.2e-76 288.5 292 58.9
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 8.9e-76 287.7 303 55.4
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 8.9e-76 287.7 306 53.9
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 7.6e-75 284.6 300 54.7
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 7.6e-75 284.6 306 54.9
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 9.9e-75 284.3 314 56.1
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 1.7e-74 283.5 301 55.5
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 4.9e-74 282.0 305 55.1
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.9e-73 280.0 311 54.7
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 5.4e-73 278.5 308 53.9
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 7.1e-73 278.1 295 54.2
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 3.5e-72 275.8 325 51.4
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 7.8e-72 274.6 264 58.0
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 7.8e-72 274.6 282 59.2
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 1.0e-71 274.2 231 60.6
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 1.7e-71 273.5 308 52.9
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 5.1e-71 271.9 257 59.1
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 5.1e-71 271.9 251 59.8
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 6.6e-71 271.6 305 52.1
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 1.1e-70 270.8 252 57.9
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 5.6e-70 268.5 278 58.3
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 7.3e-70 268.1 283 56.5
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 7.3e-70 268.1 280 57.9
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.2e-69 267.3 311 52.7
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 1.8e-68 263.5 267 56.2
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 1.8e-68 263.5 289 55.0
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 4.0e-68 262.3 268 54.9
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 5.2e-68 261.9 305 51.1
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 9.9e-67 257.7 247 57.1
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 9.9e-67 257.7 265 55.1
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 9.9e-67 257.7 268 54.1
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 1.3e-66 257.3 266 54.1
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 2.2e-66 256.5 307 50.8
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 2.9e-66 256.1 267 55.4
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 3.8e-66 255.8 308 49.7
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 2.4e-65 253.1 286 54.2
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 4.2e-65 252.3 274 56.6
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 5.4e-65 251.9 302 51.7
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 1.2e-64 250.8 309 49.5
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 2.1e-64 250.0 304 51.6
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 2.1e-64 250.0 246 56.5
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 7.8e-64 248.1 299 48.2
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 5.1e-63 245.4 329 48.0
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 1.5e-62 243.8 310 50.3
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 2.5e-62 243.0 268 54.9
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 9.6e-62 241.1 283 52.7
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.3e-61 240.7 292 48.6
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 6.2e-61 238.4 283 50.2
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 2.4e-60 236.5 298 50.0
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 3.1e-60 236.1 265 51.7
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 3.1e-60 236.1 291 49.1
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 9.0e-60 234.6 363 43.0
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 2.0e-59 233.4 240 54.2
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 3.4e-59 232.6 267 53.9
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 4.5e-59 232.3 305 49.2
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 4.5e-59 232.3 210 61.0
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 1.3e-58 230.7 286 51.0
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 1.7e-58 230.3 300 48.7
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 2.2e-58 229.9 272 52.9
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 4.9e-58 228.8 278 51.1
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 8.4e-58 228.0 288 50.7
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 2.4e-57 226.5 298 48.3
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 4.2e-57 225.7 281 51.6
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 4.2e-57 225.7 281 51.6
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 4.2e-57 225.7 312 47.1
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 1.2e-56 224.2 282 48.9
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 1.6e-56 223.8 273 52.4
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 3.5e-56 222.6 304 46.1
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 6.0e-56 221.9 292 46.6
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.0e-55 221.1 271 49.1
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 1.0e-55 221.1 309 46.9
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 2.3e-55 219.9 288 49.0
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.9e-55 219.2 302 46.4
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.9e-55 219.2 328 45.4
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 5.1e-55 218.8 279 47.7
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 6.7e-55 218.4 261 51.7
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 1.1e-54 217.6 288 48.6
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 1.3e-53 214.2 208 54.8
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 2.1e-53 213.4 297 48.5
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 2.8e-53 213.0 215 55.3
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 3.7e-53 212.6 256 48.8
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 3.7e-53 212.6 267 50.6
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 4.8e-53 212.2 247 50.6
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 4.0e-52 209.1 183 60.7
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 5.3e-52 208.8 274 46.4
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 5.3e-52 208.8 244 49.6
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 9.0e-52 208.0 215 54.9
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 2.2e-50 203.4 194 57.7
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 2.2e-50 203.4 324 39.8
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 2.9e-50 203.0 286 43.0
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 4.9e-50 202.2 224 50.9
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 4.9e-50 202.2 275 45.8
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 1.1e-49 201.1 213 54.5
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 6.0e-48 195.3 239 46.9
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 2.3e-47 193.4 157 63.7
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 5.1e-47 192.2 164 61.0
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 9.6e-46 188.0 285 43.9
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.3e-44 182.2 97 92.8
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 8.7e-39 164.9 177 51.4
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 3.3e-38 162.9 166 52.4
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 7.4e-38 161.8 205 49.8
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 7.4e-38 161.8 154 54.5
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 3.7e-37 159.5 159 53.5
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 8.2e-37 158.3 152 59.9
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.8e-36 157.1 251 42.6
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 1.1e-33 147.9 180 46.7
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 1.1e-33 147.9 291 38.8
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 7.2e-33 145.2 331 36.0
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 2.1e-32 143.7 181 43.1
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 1.4e-31 141.0 185 47.0
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.5e-30 136.7 154 49.4
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 8.2e-29 131.7 140 50.0
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 1.4e-28 131.0 94 70.2
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 9.1e-28 128.3 169 45.6
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 5.0e-26 122.5 169 44.4
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 8.5e-26 121.7 174 41.4
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.1e-25 121.3 71 78.9
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 4.2e-25 119.4 71 77.5
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 7.2e-25 118.6 196 40.8
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 4.7e-24 115.9 101 53.5
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.9e-23 112.8 97 58.8
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.9e-23 112.8 70 75.7
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 1.5e-22 110.9 144 44.4
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.0e-22 110.5 69 72.5
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 7.4e-22 108.6 152 44.7
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.8e-21 106.7 128 46.9
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 2.4e-20 103.6 110 48.2
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 3.1e-20 103.2 247 34.8
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 2.6e-19 100.1 136 45.6
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 1.9e-17 94.0 142 43.7
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 2.7e-16 90.1 276 29.7
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 1.2e-11 74.7 245 27.8
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 5.0e-10 69.3 97 36.1
SalBow5G0967 Salvia bowleyana HOM05D004030 ORTHO05D004952 6.1e-08 62.4 69 52.2
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 8.8e-07 58.5 86 46.5
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.5e-06 57.8 85 45.9
Lj5g0018916 Lotus japonicus HOM05D004030 ORTHO05D004952 2.6e-06 57.0 57 52.6


User provided reference genes

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