Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 0.0e+00 1113.2 566 100.0
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 0.0e+00 1094.3 566 97.9
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 0.0e+00 1076.2 589 93.5
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 0.0e+00 1075.5 581 94.8
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 1.1e-301 1039.3 566 93.6
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 9.2e-288 993.0 566 88.3
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 1.7e-281 972.2 559 87.8
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 1.4e-280 969.1 559 87.5
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 2.4e-272 941.8 561 84.5
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 4.1e-272 941.0 481 98.1
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 1.2e-263 912.9 566 81.1
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 1.2e-263 912.9 561 80.4
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 2.3e-262 908.7 560 80.9
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 2.3e-262 908.7 559 81.0
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 1.5e-261 906.0 629 74.7
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.2e-260 902.9 561 80.2
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 2.8e-260 901.7 559 80.3
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 6.2e-260 900.6 562 80.1
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 1.4e-259 899.4 561 79.7
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.4e-259 899.4 562 79.9
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 5.2e-259 897.5 562 79.9
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 1.2e-258 896.3 561 80.0
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 4.4e-258 894.4 566 78.8
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 7.6e-258 893.6 561 79.5
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 7.6e-258 893.6 566 79.0
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 9.9e-258 893.3 564 79.3
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.3e-257 892.9 567 79.0
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 3.8e-257 891.3 567 78.8
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.4e-256 889.4 567 78.3
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 3.2e-256 888.3 569 78.9
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 4.2e-256 887.9 562 78.8
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 4.2e-256 887.9 561 79.7
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 7.1e-256 887.1 557 79.4
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 7.1e-256 887.1 565 78.4
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.2e-255 886.3 557 79.4
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 6.0e-255 884.0 560 78.6
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 2.3e-254 882.1 561 77.4
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 6.6e-254 880.6 561 77.2
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.1e-253 879.8 566 78.1
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 1.3e-252 876.3 561 77.4
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 2.8e-252 875.2 551 79.3
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 6.2e-252 874.0 563 78.0
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.4e-251 872.1 563 77.8
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 4.0e-251 871.3 566 76.9
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 6.9e-251 870.5 561 77.2
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 6.9e-251 870.5 558 77.6
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 2.6e-250 868.6 549 78.1
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 2.6e-250 868.6 561 76.6
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 4.4e-250 867.8 566 76.7
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 9.9e-250 866.7 549 77.6
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 1.7e-249 865.9 549 77.8
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 2.9e-249 865.1 566 76.5
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 2.4e-248 862.1 543 80.3
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 2.7e-247 858.6 581 74.2
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 2.7e-247 858.6 561 76.5
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 4.6e-247 857.8 538 79.2
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 6.0e-247 857.4 559 76.9
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 1.3e-246 856.3 558 77.6
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 1.1e-245 853.2 559 76.2
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 1.5e-245 852.8 555 77.3
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 1.5e-245 852.8 561 76.3
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 3.3e-245 851.7 604 72.7
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 4.8e-244 847.8 555 77.3
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 6.2e-244 847.4 566 75.8
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 8.1e-244 847.0 555 77.3
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 8.1e-244 847.0 555 77.5
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 1.4e-243 846.3 561 76.3
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 3.1e-243 845.1 552 77.0
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 3.1e-243 845.1 555 76.0
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 6.9e-243 844.0 552 77.7
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 1.2e-242 843.2 559 76.2
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 1.5e-242 842.8 571 74.8
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 2.0e-242 842.4 561 75.8
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 2.6e-242 842.0 555 76.0
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 5.8e-242 840.9 558 75.1
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 5.8e-242 840.9 563 76.4
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 9.9e-242 840.1 561 75.6
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 1.9e-240 835.9 566 74.4
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 9.3e-240 833.6 552 76.4
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 3.5e-239 831.6 555 75.7
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 4.6e-239 831.2 559 73.9
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 1.0e-238 830.1 566 75.3
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 1.0e-238 830.1 563 73.5
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 1.3e-238 829.7 554 76.0
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 1.3e-238 829.7 554 76.0
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 8.7e-238 827.0 554 75.6
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 1.1e-237 826.6 566 74.2
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 2.1e-236 822.4 552 75.0
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 6.2e-236 820.8 553 77.2
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 5.3e-235 817.8 559 76.4
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 9.0e-235 817.0 553 76.9
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 7.6e-234 813.9 556 72.1
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 1.0e-233 813.5 565 74.0
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 6.5e-233 810.8 534 76.6
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.6e-231 806.2 561 73.4
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 2.1e-231 805.8 552 74.8
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 3.5e-231 805.1 599 69.3
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 3.5e-231 805.1 552 74.8
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.3e-230 803.1 559 75.1
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 1.5e-229 799.7 516 75.8
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 1.9e-229 799.3 555 73.9
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 2.5e-229 798.9 563 71.9
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.3e-228 796.6 533 76.4
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 2.8e-228 795.4 543 72.9
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 4.8e-228 794.7 602 69.1
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 3.4e-226 788.5 551 73.5
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 5.0e-225 784.6 557 70.2
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 6.5e-225 784.3 612 68.8
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 2.5e-224 782.3 555 72.6
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 7.9e-223 777.3 557 71.5
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 1.8e-222 776.2 555 70.5
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 8.7e-222 773.9 547 73.7
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 3.3e-221 771.9 559 70.8
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 3.1e-219 765.4 632 63.4
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 1.1e-216 756.9 558 68.8
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 2.1e-215 752.7 557 67.3
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 7.7e-210 734.2 576 65.5
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 2.1e-207 726.1 454 80.2
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 5.5e-200 701.4 564 65.6
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 4.0e-198 695.3 479 73.7
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 4.8e-196 688.3 505 66.5
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.4e-195 686.0 480 71.5
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 1.7e-193 679.9 559 60.6
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 5.7e-181 638.3 561 57.2
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 5.9e-178 628.2 564 58.0
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 2.4e-171 606.3 413 74.1
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 2.6e-165 586.3 394 74.1
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 9.8e-165 584.3 408 72.5
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 2.9e-164 582.8 394 73.9
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 2.9e-164 582.8 359 83.0
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 9.2e-163 577.8 365 76.7
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 3.4e-141 506.1 568 48.8
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 2.4e-134 483.4 533 45.8
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 4.3e-128 462.6 325 73.5
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 1.8e-126 457.2 272 82.4
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 5.5e-115 419.1 336 67.0
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.1e-98 364.0 220 80.0
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 1.8e-81 307.8 195 75.9
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.1e-75 288.5 200 76.5
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 2.0e-64 251.1 195 67.2
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.2e-53 215.3 141 76.6
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 2.3e-49 201.1 152 65.1
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 6.4e-47 193.0 147 67.3
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 1.2e-42 178.7 117 75.2
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 3.1e-41 174.1 189 53.4
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 3.8e-31 140.6 85 88.2
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 3.3e-27 127.5 88 71.6
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 1.6e-26 125.2 82 78.0
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 3.8e-23 114.0 92 57.6
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 4.2e-22 110.5 79 67.1
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.1e-21 108.2 80 61.2
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 2.7e-21 107.8 109 52.3
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 5.3e-09 67.0 55 58.2


User provided reference genes

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