Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 0.0e+00 1425.2 746 100.0
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 0.0e+00 1261.1 700 95.9
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 0.0e+00 1218.0 679 95.7
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 0.0e+00 1192.2 653 96.9
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 0.0e+00 1166.4 668 92.1
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 0.0e+00 1120.1 704 86.4
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 1.0e-302 1043.1 682 80.4
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.1e-301 1039.6 657 82.5
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 1.4e-299 1032.7 668 80.7
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 3.3e-261 905.2 687 71.5
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 1.0e-254 883.6 664 71.1
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 1.3e-254 883.2 661 71.0
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 3.8e-249 865.1 656 68.3
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 2.5e-248 862.4 649 70.4
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 2.3e-246 855.9 670 68.1
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.5e-245 853.2 675 67.0
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 3.3e-245 852.0 646 70.1
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 3.7e-244 848.6 648 69.3
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 8.2e-244 847.4 655 68.7
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.1e-243 847.0 673 67.2
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 2.4e-243 845.9 651 68.2
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 6.9e-243 844.3 648 68.8
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 1.2e-242 843.6 670 65.7
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 2.6e-242 842.4 670 65.4
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 3.4e-242 842.0 649 68.1
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 5.9e-242 841.3 688 65.6
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 7.7e-242 840.9 646 69.2
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 1.3e-241 840.1 649 68.0
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 8.5e-241 837.4 653 68.1
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 9.4e-240 833.9 649 67.5
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 1.6e-239 833.2 649 67.8
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 1.6e-239 833.2 688 64.5
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 2.1e-239 832.8 654 67.3
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 4.7e-239 831.6 661 67.8
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 1.1e-237 827.0 650 67.4
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 7.4e-237 824.3 651 66.4
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.3e-236 823.5 644 67.1
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.3e-236 823.5 651 66.4
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.7e-236 823.2 650 67.7
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 2.2e-236 822.8 650 67.5
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 2.4e-235 819.3 651 65.7
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 9.1e-235 817.4 650 66.5
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 9.1e-235 817.4 654 67.4
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.5e-234 816.6 627 67.6
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 1.4e-230 803.5 670 63.6
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 2.0e-229 799.7 667 63.9
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 3.7e-228 795.4 646 66.6
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 1.2e-226 790.4 633 66.4
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 3.8e-225 785.4 587 69.2
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.1e-224 783.9 664 61.6
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 1.5e-224 783.5 646 62.4
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 1.6e-223 780.0 650 64.8
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 2.7e-223 779.2 652 62.1
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 2.7e-223 779.2 681 61.5
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 3.0e-222 775.8 666 62.5
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 2.2e-220 769.6 674 61.1
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 3.7e-220 768.8 651 62.8
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 4.8e-220 768.5 651 62.8
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 3.5e-218 762.3 651 62.8
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 5.0e-217 758.4 646 61.1
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 5.0e-217 758.4 675 60.1
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 6.5e-217 758.1 653 62.5
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 1.9e-216 756.5 647 62.1
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 4.2e-216 755.4 662 59.1
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 7.2e-216 754.6 642 61.8
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 7.2e-216 754.6 648 61.3
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 6.1e-215 751.5 662 60.7
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 1.0e-214 750.7 677 60.6
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 5.2e-214 748.4 678 60.0
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 1.5e-213 746.9 647 60.6
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 5.7e-213 745.0 633 61.5
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 9.8e-213 744.2 581 70.4
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 6.3e-212 741.5 667 58.5
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 1.8e-211 740.0 647 60.4
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 2.4e-211 739.6 647 60.6
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 4.1e-211 738.8 647 59.7
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 7.0e-211 738.0 541 71.7
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 9.1e-211 737.6 648 59.6
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 2.7e-210 736.1 681 58.9
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 1.0e-209 734.2 647 60.3
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 2.9e-209 732.6 637 60.9
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 3.8e-209 732.3 647 59.8
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 1.5e-208 730.3 669 59.8
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 1.5e-208 730.3 669 59.8
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.9e-208 729.9 670 59.1
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 9.5e-208 727.6 673 58.2
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 4.7e-207 725.3 645 59.5
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 1.2e-205 720.7 661 59.2
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 1.5e-205 720.3 653 58.8
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 2.0e-205 719.9 659 60.1
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 3.2e-203 712.6 633 63.5
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 5.4e-203 711.8 698 56.4
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 2.1e-199 699.9 536 66.2
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 1.4e-198 697.2 654 58.1
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 4.0e-198 695.7 674 56.2
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 4.1e-195 685.6 692 54.9
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 5.4e-195 685.3 669 55.6
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 8.1e-191 671.4 650 55.1
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 2.6e-189 666.4 670 54.3
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 6.4e-180 635.2 633 55.8
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 8.4e-180 634.8 567 60.3
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 4.0e-174 615.9 539 59.4
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 6.4e-172 608.6 532 59.6
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 6.4e-172 608.6 567 58.6
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 3.2e-171 606.3 514 62.1
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 5.6e-168 595.5 651 50.7
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 2.2e-164 583.6 672 51.5
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 7.1e-163 578.6 625 51.0
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 5.3e-158 562.4 644 47.7
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 2.6e-157 560.1 640 47.8
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 2.1e-151 540.4 646 46.3
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.1e-150 538.1 398 68.3
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 1.3e-140 504.6 434 62.7
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 8.4e-140 501.9 645 44.5
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 1.1e-139 501.5 625 46.6
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 3.5e-138 496.5 643 44.0
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 8.7e-137 491.9 642 45.3
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 3.1e-134 483.4 389 66.1
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 1.1e-131 474.9 648 42.0
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 4.1e-126 456.4 392 64.5
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.3e-87 328.6 247 68.4
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 3.7e-87 327.0 429 46.2
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 3.3e-83 313.9 364 49.2
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 3.7e-79 300.4 364 48.6
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 3.0e-76 290.8 300 55.0
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 4.0e-65 253.8 207 64.7
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 1.3e-63 248.8 432 37.7
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.1e-61 241.5 133 94.0
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 3.9e-60 237.3 380 42.6
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 8.1e-58 229.6 252 51.6
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 1.4e-57 228.8 205 63.9
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 9.9e-56 222.6 370 40.0
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 5.3e-49 200.3 201 56.7
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 1.8e-44 185.3 303 42.6
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 3.9e-44 184.1 290 41.4
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 6.9e-41 173.3 96 91.7
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 3.4e-40 171.0 167 53.3
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.4e-38 165.6 236 47.9
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.2e-38 164.1 134 70.1
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.1e-37 161.8 134 67.9
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 4.6e-37 160.6 254 39.0
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 3.0e-36 157.9 148 64.2
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.6e-34 152.1 132 68.2
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 2.1e-34 151.8 642 26.5
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 2.8e-34 151.4 187 49.7
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 1.2e-32 146.0 82 90.2
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 2.6e-32 144.8 88 83.0
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 3.5e-29 134.4 95 66.3
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 1.9e-27 128.6 109 58.7
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 9.7e-27 126.3 128 58.6
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.8e-26 124.8 69 91.3
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.5e-24 117.5 67 89.6
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 1.4e-17 95.9 71 67.6
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 5.0e-15 87.4 71 57.7
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 6.7e-12 77.0 68 55.9
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 7.4e-11 73.6 82 51.2
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 1.3e-10 72.8 68 50.0
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 6.3e-10 70.5 71 53.5
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 1.1e-09 69.7 63 55.6
FAN19G2524 Fragaria x ananassa HOM05D004114 ORTHO05D200154 3.8e-07 61.2 63 58.7
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 8.5e-07 60.1 67 50.7
Haze_13943 Corylus avellana HOM05D024343 ORTHO05D165892 1.1e-06 59.7 114 32.5
arahy.Tifrunner.gnm1.ann1.JG00WY Arachis hypogaea HOM05D004114 ORTHO05D004667 1.4e-06 59.3 47 59.6
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 1.4e-06 59.3 162 26.5
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 3.2e-06 58.2 55 49.1
Cfa021076 Carpinus fangiana HOM05D029012 ORTHO05D034191 3.2e-06 58.2 199 25.6


User provided reference genes

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