Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.2e-86 323.2 165 100.0
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 7.5e-65 250.8 148 90.5
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 1.3e-64 250.0 148 90.5
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.3e-64 250.0 148 90.5
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.3e-64 250.0 148 90.5
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 1.7e-61 239.6 148 85.8
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 3.0e-61 238.8 148 85.1
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 5.0e-61 238.0 148 85.1
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 1.2e-59 233.4 150 82.0
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 5.2e-58 228.0 148 79.7
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 2.4e-55 219.2 148 78.4
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 7.0e-55 217.6 148 75.7
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 9.2e-55 217.2 148 77.0
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 1.9e-52 209.5 148 71.6
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 3.3e-52 208.8 152 71.1
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 3.6e-51 205.3 149 74.5
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 8.1e-51 204.1 149 73.2
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 4.0e-50 201.8 148 69.6
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 1.5e-49 199.9 149 71.8
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 2.0e-49 199.5 148 67.6
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 2.6e-49 199.1 148 67.6
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 2.6e-49 199.1 148 67.6
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 3.4e-49 198.7 150 70.0
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 4.4e-49 198.4 148 71.6
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 4.4e-49 198.4 147 71.4
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 7.5e-49 197.6 150 68.7
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 7.5e-49 197.6 150 68.7
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 7.5e-49 197.6 150 69.3
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 7.5e-49 197.6 146 68.5
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 7.5e-49 197.6 149 71.1
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 1.3e-48 196.8 144 71.5
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 1.3e-48 196.8 144 71.5
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 1.7e-48 196.4 147 69.4
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 2.2e-48 196.1 149 70.5
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 2.9e-48 195.7 149 68.5
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 2.9e-48 195.7 149 70.5
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 3.7e-48 195.3 165 64.2
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 4.9e-48 194.9 152 67.8
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 6.4e-48 194.5 148 68.9
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 8.3e-48 194.1 147 69.4
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 1.1e-47 193.7 152 67.1
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 1.1e-47 193.7 152 67.1
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 1.9e-47 193.0 152 67.1
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 1.9e-47 193.0 147 68.7
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 2.4e-47 192.6 152 67.1
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 2.4e-47 192.6 146 67.8
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 2.4e-47 192.6 146 67.8
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 2.4e-47 192.6 145 69.0
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.4e-47 192.6 148 67.6
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 3.2e-47 192.2 144 69.4
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 5.4e-47 191.4 148 66.9
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 5.4e-47 191.4 149 68.5
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 5.4e-47 191.4 149 68.5
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 7.1e-47 191.0 152 65.8
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 7.1e-47 191.0 149 68.5
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 9.2e-47 190.7 147 68.7
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 1.2e-46 190.3 152 65.8
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 1.2e-46 190.3 152 65.8
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.7e-46 189.1 148 66.9
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 2.7e-46 189.1 152 65.8
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 2.7e-46 189.1 152 65.8
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 2.7e-46 189.1 152 65.8
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 2.7e-46 189.1 149 68.5
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 2.7e-46 189.1 146 68.5
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 3.5e-46 188.7 152 65.8
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 3.5e-46 188.7 152 65.8
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 3.5e-46 188.7 152 65.8
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 6.0e-46 188.0 147 66.7
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 6.0e-46 188.0 148 66.9
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 6.0e-46 188.0 147 71.4
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 7.8e-46 187.6 152 65.1
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 7.8e-46 187.6 148 66.9
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 7.8e-46 187.6 151 66.2
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 1.0e-45 187.2 152 65.1
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 1.0e-45 187.2 144 66.7
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 1.0e-45 187.2 149 67.1
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.3e-45 186.8 148 65.5
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 1.3e-45 186.8 152 63.8
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 1.3e-45 186.8 152 63.8
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 1.3e-45 186.8 145 66.2
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 2.3e-45 186.0 147 66.0
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 2.3e-45 186.0 148 65.5
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 3.0e-45 185.7 145 66.9
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 3.0e-45 185.7 148 68.2
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 3.0e-45 185.7 149 66.4
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 3.0e-45 185.7 149 66.4
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 3.0e-45 185.7 151 64.9
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 3.9e-45 185.3 151 64.9
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 3.9e-45 185.3 148 66.2
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 3.9e-45 185.3 149 67.1
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 5.1e-45 184.9 152 64.5
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 6.6e-45 184.5 148 67.6
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 8.6e-45 184.1 146 67.1
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 8.6e-45 184.1 148 64.2
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 8.6e-45 184.1 145 65.5
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 1.1e-44 183.7 148 66.2
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 1.9e-44 183.0 148 66.2
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 2.5e-44 182.6 148 62.8
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 2.5e-44 182.6 149 65.8
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 2.5e-44 182.6 147 66.7
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 3.3e-44 182.2 148 63.5
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 3.3e-44 182.2 147 66.7
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 5.6e-44 181.4 148 65.5
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 9.5e-44 180.6 148 61.5
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 9.5e-44 180.6 145 66.2
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 1.2e-43 180.3 148 64.2
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 1.2e-43 180.3 148 61.5
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 1.6e-43 179.9 146 61.0
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 2.8e-43 179.1 149 64.4
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 4.7e-43 178.3 146 62.3
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 4.7e-43 178.3 150 62.0
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 1.1e-42 177.2 146 61.6
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.1e-42 175.6 151 64.2
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 8.9e-42 174.1 147 63.3
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 7.6e-41 171.0 148 61.5
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 9.9e-41 170.6 142 63.4
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 6.4e-40 167.9 153 58.2
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 6.4e-40 167.9 149 57.7
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 7.1e-39 164.5 146 55.5
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 4.6e-38 161.8 147 59.2
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 6.0e-38 161.4 149 59.7
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 3.0e-37 159.1 153 57.5
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 5.6e-36 154.8 150 54.7
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 9.6e-36 154.1 141 56.0
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 1.3e-32 143.7 158 49.4
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 6.4e-32 141.4 154 51.3
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 5.4e-31 138.3 154 51.3
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 6.6e-29 131.3 155 51.0
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 4.3e-28 128.6 126 55.6
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 1.6e-27 126.7 158 46.2
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 4.8e-27 125.2 147 47.6
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 2.2e-24 116.3 146 48.6
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.9e-20 103.2 69 76.8
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 1.3e-19 100.5 134 38.8
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 4.8e-19 98.6 63 77.8
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 3.8e-16 89.0 129 40.3
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 5.5e-15 85.1 85 50.6
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.2e-14 84.0 86 51.2
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 3.5e-14 82.4 79 58.2
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.5e-12 77.0 50 76.0
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.5e-12 77.0 50 76.0
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 1.9e-12 76.6 136 34.6
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 3.3e-12 75.9 49 65.3
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 7.4e-12 74.7 47 70.2
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 9.6e-12 74.3 115 33.9
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.3e-11 73.9 68 57.4
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 1.5e-09 67.0 65 60.0
Carub.0005s1381 Capsella rubella HOM05D003949 ORTHO05D004504 5.5e-07 58.5 42 57.1


User provided reference genes

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