Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 7.5e-50 200.3 106 100.0
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 8.3e-49 196.8 106 98.1
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 8.3e-49 196.8 106 98.1
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 1.1e-48 196.4 106 98.1
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.1e-48 196.4 106 98.1
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 5.4e-48 194.1 106 99.1
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 9.1e-48 193.4 106 96.2
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.9e-46 188.3 106 94.3
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 4.9e-41 171.0 106 83.0
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 5.0e-38 161.0 106 75.5
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 5.6e-37 157.5 105 76.2
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 7.3e-37 157.1 106 74.5
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 4.7e-36 154.5 106 76.4
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 4.7e-36 154.5 105 75.2
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 6.1e-36 154.1 114 71.9
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 8.0e-36 153.7 106 75.5
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 8.0e-36 153.7 103 75.7
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 8.0e-36 153.7 106 73.6
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.0e-35 153.3 105 73.3
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 1.0e-35 153.3 105 73.3
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 1.8e-35 152.5 105 71.4
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.8e-35 152.5 105 72.4
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 1.8e-35 152.5 105 73.3
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 6.8e-35 150.6 107 74.8
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 6.8e-35 150.6 105 71.4
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 8.9e-35 150.2 103 72.8
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 8.9e-35 150.2 106 70.8
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 1.2e-34 149.8 105 72.4
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 2.0e-34 149.1 103 70.9
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 2.0e-34 149.1 103 70.9
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 2.0e-34 149.1 103 70.9
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 2.0e-34 149.1 116 67.2
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 3.4e-34 148.3 106 70.8
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 3.4e-34 148.3 106 72.6
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 5.7e-34 147.5 103 70.9
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 5.7e-34 147.5 103 69.9
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.3e-33 146.4 106 71.7
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 2.9e-33 145.2 107 72.0
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 2.9e-33 145.2 105 71.4
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 2.9e-33 145.2 103 69.9
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 3.7e-33 144.8 103 68.9
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 3.7e-33 144.8 119 66.4
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 4.9e-33 144.4 107 70.1
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 4.9e-33 144.4 106 71.7
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 8.3e-33 143.7 103 68.0
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 1.1e-32 143.3 105 69.5
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 1.1e-32 143.3 108 69.4
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 1.8e-32 142.5 94 75.5
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 1.8e-32 142.5 106 68.9
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 2.4e-32 142.1 106 68.9
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 3.2e-32 141.7 106 70.8
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 3.2e-32 141.7 107 68.2
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 4.1e-32 141.4 108 67.6
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 4.1e-32 141.4 106 68.9
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 9.2e-32 140.2 106 66.0
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 1.6e-31 139.4 92 77.2
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 1.6e-31 139.4 109 67.0
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 2.0e-31 139.0 103 68.0
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 2.7e-31 138.7 106 65.1
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 3.5e-31 138.3 106 67.9
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 4.6e-31 137.9 107 68.2
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 4.6e-31 137.9 106 65.1
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 4.6e-31 137.9 106 66.0
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 5.9e-31 137.5 105 68.6
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 7.8e-31 137.1 106 65.1
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 1.0e-30 136.7 103 67.0
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 1.0e-30 136.7 103 67.0
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 1.0e-30 136.7 106 66.0
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 1.0e-30 136.7 106 66.0
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 1.7e-30 136.0 105 67.6
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 3.0e-30 135.2 107 69.2
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 3.0e-30 135.2 106 64.2
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 3.0e-30 135.2 106 63.2
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 3.9e-30 134.8 84 76.2
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 5.0e-30 134.4 106 63.2
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 5.0e-30 134.4 106 63.2
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 5.0e-30 134.4 106 63.2
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 5.0e-30 134.4 106 62.3
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 6.6e-30 134.0 106 63.2
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 6.6e-30 134.0 106 63.2
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 6.6e-30 134.0 107 67.3
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 6.6e-30 134.0 107 67.3
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 6.6e-30 134.0 107 65.4
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 8.6e-30 133.7 106 62.3
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.5e-29 132.9 96 65.6
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 1.5e-29 132.9 106 62.3
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 1.5e-29 132.9 105 62.9
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 1.9e-29 132.5 106 63.2
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 1.9e-29 132.5 107 64.5
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 2.5e-29 132.1 106 67.0
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 3.3e-29 131.7 107 65.4
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 3.3e-29 131.7 106 64.2
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 4.3e-29 131.3 106 61.3
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 4.3e-29 131.3 105 59.0
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 4.3e-29 131.3 105 64.8
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 7.3e-29 130.6 114 60.5
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 9.5e-29 130.2 104 62.5
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 1.2e-28 129.8 106 60.4
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.2e-28 129.8 103 63.1
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 2.1e-28 129.0 127 57.5
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 3.6e-28 128.3 106 63.2
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 1.0e-27 126.7 93 71.0
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 1.4e-27 126.3 102 61.8
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 1.8e-27 125.9 125 55.2
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 2.3e-27 125.6 106 63.2
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 6.8e-27 124.0 99 60.6
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 6.8e-27 124.0 105 63.8
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 1.2e-26 123.2 96 62.5
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 3.4e-26 121.7 107 61.7
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 5.8e-26 120.9 105 59.0
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 5.8e-26 120.9 105 59.0
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 5.8e-26 120.9 93 66.7
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 7.5e-26 120.6 92 69.6
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 9.8e-26 120.2 96 61.5
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 3.7e-25 118.2 107 56.1
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 4.9e-25 117.9 89 62.9
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 4.9e-25 117.9 103 57.3
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 6.4e-25 117.5 105 57.1
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 7.0e-24 114.0 105 56.2
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 7.0e-24 114.0 104 60.6
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 1.2e-23 113.2 106 55.7
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.6e-23 112.8 95 61.1
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.6e-23 112.8 104 59.6
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 3.5e-23 111.7 105 58.1
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 1.7e-22 109.4 105 54.3
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 3.0e-22 108.6 102 56.9
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 8.6e-22 107.1 90 60.0
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 1.9e-21 105.9 74 74.3
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 2.5e-21 105.5 103 55.3
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 5.6e-21 104.4 92 60.9
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 9.5e-21 103.6 74 70.3
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 5.2e-19 97.8 74 68.9
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 6.8e-19 97.4 75 72.0
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.1e-16 90.1 63 71.4
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 5.4e-16 87.8 83 54.2
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 9.2e-16 87.0 76 67.1
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 2.1e-15 85.9 66 63.6
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 7.8e-15 84.0 61 67.2
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 7.8e-15 84.0 73 60.3
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 1.0e-14 83.6 108 43.5
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 8.6e-14 80.5 67 64.2
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 1.5e-13 79.7 100 45.0
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 1.6e-12 76.3 74 63.5
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.5e-10 69.7 70 64.3
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 7.6e-10 67.4 75 53.3
FAN19G2356 Fragaria x ananassa HOM05D029494 ORTHO05D035663 3.8e-09 65.1 42 85.7
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 2.7e-07 58.9 69 44.9


User provided reference genes

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