Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1225 Fragaria x ananassa HOM05D007013 ORTHO05D008999 1.7e-232 808.9 399 100.0
FvH4_3g19730 Fragaria vesca HOM05D007013 ORTHO05D008999 2.4e-205 718.8 390 92.8
RcHm_v2.0_Chr5g0033071 Rosa chinensis HOM05D007013 ORTHO05D008999 4.2e-186 654.8 397 83.9
FAN11G2199 Fragaria x ananassa HOM05D007013 ORTHO05D008999 5.5e-170 601.3 389 80.7
MD11G1215400 Malus domestica HOM05D007013 ORTHO05D008999 1.4e-160 570.1 387 73.9
CANSAT11G0669 Cannabis sativa HOM05D007013 ORTHO05D008999 9.4e-138 494.2 390 63.3
CiPaw.12G131100 Carya illinoinensis HOM05D007013 ORTHO05D008999 6.8e-136 488.0 389 64.0
Prupe.4G215900 Prunus persica HOM05D007013 ORTHO05D008999 8.8e-136 487.6 388 66.0
QL08p009594 Quercus lobata HOM05D007013 ORTHO05D008999 5.7e-135 485.0 394 63.5
Atru.chr2.3453 Acer truncatum HOM05D007013 ORTHO05D008999 2.8e-134 482.6 386 62.4
Cfa020325 Carpinus fangiana HOM05D007013 ORTHO05D008999 1.1e-133 480.7 390 62.8
Ciclev10008561m.g Citrus clementina HOM05D007013 ORTHO05D008999 3.8e-131 472.2 386 61.4
Potri.001G418800 Populus trichocarpa HOM05D007013 ORTHO05D008999 4.2e-130 468.8 386 61.7
GSVIVG01037670001 Vitis vinifera HOM05D007013 ORTHO05D008999 4.2e-130 468.8 390 61.3
TWI38G0247 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 1.8e-128 463.4 387 59.2
Duzib213G0396 Durio zibethinus HOM05D007013 ORTHO05D008999 1.5e-127 460.3 386 60.4
Gohir.D01G068100 Gossypium hirsutum HOM05D007013 ORTHO05D008999 1.1e-125 454.1 392 58.4
Thecc.07G033700 Theobroma cacao HOM05D007013 ORTHO05D008999 1.1e-125 454.1 392 59.4
Gorai.002G090100 Gossypium raimondii HOM05D007013 ORTHO05D008999 1.8e-125 453.4 392 58.2
Lalb_Chr18g0049881 Lupinus albus HOM05D007013 ORTHO05D008999 7.0e-125 451.4 384 59.1
MELO3C013155.2 Cucumis melo HOM05D007013 ORTHO05D008999 1.7e-123 446.8 386 59.3
TAR624G0955 Trochodendron aralioides HOM05D007013 ORTHO05D008999 2.9e-123 446.0 391 59.3
Eucgr.F03478 Eucalyptus grandis HOM05D007013 ORTHO05D008999 3.3e-122 442.6 401 57.1
Medtr3g052590 Medicago truncatula HOM05D007013 ORTHO05D008999 9.5e-122 441.0 389 57.6
CSS0027260 Camellia sinensis var. sinensis HOM05D007013 ORTHO05D008999 1.2e-121 440.7 393 59.3
Hma1.2p1_0036F.1_g023520 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 1.2e-121 440.7 393 59.5
CsaV3_7G021910 Cucumis sativus L. HOM05D007013 ORTHO05D008999 8.0e-121 438.0 386 58.3
Glyma.08G318300 Glycine max HOM05D007013 ORTHO05D008999 1.4e-120 437.2 386 58.5
VMungo0540G0725 Vigna mungo HOM05D007013 ORTHO05D008999 2.3e-120 436.4 386 58.0
arahy.Tifrunner.gnm1.ann1.YL2AFE Arachis hypogaea HOM05D007013 ORTHO05D008999 3.0e-120 436.0 393 56.2
TPR.G33766 Trifolium pratense HOM05D007013 ORTHO05D008999 5.2e-120 435.3 390 58.7
Haze_09698 Corylus avellana HOM05D007013 ORTHO05D008999 1.5e-119 433.7 360 61.7
Lj6g0002864 Lotus japonicus HOM05D007013 ORTHO05D008999 2.0e-119 433.3 389 57.8
CAN.G337.80 Capsicum annuum HOM05D007013 ORTHO05D008999 3.4e-119 432.6 392 57.7
THA.LOC104825406 Tarenaya hassleriana HOM05D007013 ORTHO05D008999 5.7e-119 431.8 393 56.0
Psat5g177160 Pisum sativum HOM05D007013 ORTHO05D008999 7.5e-119 431.4 387 57.4
AL3G34260 Arabidopsis lyrata HOM05D007013 ORTHO05D008999 1.3e-118 430.6 384 59.1
vmacro02226 Vaccinium macrocarpon HOM05D007013 ORTHO05D008999 2.2e-118 429.9 393 57.5
PSO541G1885 Papaver somniferum HOM05D007013 ORTHO05D008999 3.2e-117 426.0 390 54.6
PSO675G8214 Papaver somniferum HOM05D007013 ORTHO05D008999 5.4e-117 425.2 392 54.3
Actinidia05088 Actinidia chinensis HOM05D007013 ORTHO05D008999 7.0e-117 424.9 388 58.2
Carub.0003s2044 Capsella rubella HOM05D007013 ORTHO05D008999 7.0e-117 424.9 386 57.0
BcaB07g30535 Brassica carinata HOM05D007013 ORTHO05D008999 2.9e-115 419.5 386 56.7
Oeu034036.2 Olea europaea HOM05D007013 ORTHO05D008999 1.5e-114 417.2 389 55.5
Nitab4.5_0002287g0070 Nicotiana tabacum HOM05D007013 ORTHO05D008999 3.3e-114 416.0 403 54.6
BraA02t07867Z Brassica rapa HOM05D007013 ORTHO05D008999 4.3e-114 415.6 386 55.7
Thhalv10020871m.g Eutrema salsugineum HOM05D007013 ORTHO05D008999 9.5e-114 414.5 384 56.8
Peaxi162Scf00235g00319 Petunia axillaris HOM05D007013 ORTHO05D008999 1.2e-113 414.1 407 55.0
BolC2t10525H Brassica oleracea HOM05D007013 ORTHO05D008999 1.6e-113 413.7 383 55.9
Aa31LG8G7290 Aethionema arabicum HOM05D007013 ORTHO05D008999 2.8e-113 412.9 386 56.0
C02p44890 Brassica napus HOM05D007013 ORTHO05D008999 2.8e-113 412.9 386 56.0
ClCG09G010880 Citrullus lanatus HOM05D007013 ORTHO05D008999 1.0e-112 411.0 385 55.3
Sabra16G0284300 Salix brachista HOM05D007013 ORTHO05D008999 1.0e-112 411.0 385 55.8
Sp2g09120 Schrenkiella parvula HOM05D007013 ORTHO05D008999 2.3e-112 409.8 390 55.9
Cpa.g.sc12.289 Carica papaya HOM05D007013 ORTHO05D008999 3.1e-112 409.5 391 55.2
HanXRQChr03g0076401 Helianthus annuus HOM05D007013 ORTHO05D008999 5.2e-112 408.7 393 53.4
Solyc07g064710.3 Solanum lycopersicum HOM05D007013 ORTHO05D008999 1.5e-111 407.1 393 54.7
Aqoxy1G02096 Aquilegia oxysepala HOM05D007013 ORTHO05D008999 2.0e-111 406.8 388 55.2
Nitab4.5_0005590g0010 Nicotiana tabacum HOM05D007013 ORTHO05D008999 7.5e-111 404.8 402 53.5
Ca_14746_v3 Cicer arietinum L. HOM05D007013 ORTHO05D008999 1.7e-110 403.7 329 60.8
Hund01977 Selenicereus undatus HOM05D007013 ORTHO05D008999 2.2e-110 403.3 386 52.8
COL.COLO4_09677 Corchorus olitorius HOM05D007013 ORTHO05D008999 8.3e-110 401.4 387 55.0
Cc05_g13940 Coffea canephora HOM05D007013 ORTHO05D008999 1.6e-108 397.1 391 52.9
A02p28310 Brassica napus HOM05D007013 ORTHO05D008999 4.6e-108 395.6 367 55.6
ECA240G2937 Erigeron canadensis HOM05D007013 ORTHO05D008999 4.6e-108 395.6 390 52.1
DCAR_012723 Daucus carota HOM05D007013 ORTHO05D008999 7.8e-108 394.8 391 53.2
MSTRG.14440 Avicennia marina HOM05D007013 ORTHO05D008999 3.0e-107 392.9 388 52.1
EL10Ac4g07781 Beta vulgaris HOM05D007013 ORTHO05D008999 1.1e-106 391.0 386 50.5
Sc16g0005930 Simmondsia chinensis HOM05D007013 ORTHO05D008999 4.3e-106 389.0 385 51.7
Nn1g07163 Nelumbo nucifera HOM05D007013 ORTHO05D008999 1.6e-105 387.1 363 56.2
Sed0023076 Sechium edule HOM05D007013 ORTHO05D008999 8.1e-105 384.8 345 57.7
Manes.15G070387 Manihot esculenta HOM05D007013 ORTHO05D008999 2.0e-103 380.2 317 62.5
Migut.H01815 Erythranthe guttata HOM05D007013 ORTHO05D008999 3.4e-103 379.4 393 50.6
HPP92_012407 Vanilla planifolia HOM05D007013 ORTHO05D008999 3.5e-100 369.4 390 50.0
BcaC03g16648 Brassica carinata HOM05D007013 ORTHO05D008999 6.0e-100 368.6 345 55.7
unitig_578.g16279 Utricularia gibba HOM05D001434 ORTHO05D008999 1.0e-99 367.9 391 48.6
AUR62020414 Chenopodium quinoa HOM05D007013 ORTHO05D008999 1.6e-97 360.5 353 51.0
Ah.06g182900 Amaranthus hybridus HOM05D007013 ORTHO05D008999 2.1e-97 360.1 385 46.8
Sopen07g032910 Solanum pennellii HOM05D007013 ORTHO05D008999 2.8e-97 359.8 385 51.2
Lsat_1_v5_gn_9_93121 Lactuca sativa HOM05D007013 ORTHO05D008999 1.1e-96 357.8 388 50.5
arahy.Tifrunner.gnm1.ann1.PYQ1JD Arachis hypogaea HOM05D007013 ORTHO05D008999 1.4e-93 347.4 309 55.7
Hma1.2p1_0036F.1_g023530 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 1.4e-93 347.4 322 59.3
ATR0794G085 Amborella trichopoda HOM05D007013 ORTHO05D008999 2.6e-87 326.6 317 53.6
AT3G20480 Arabidopsis thaliana HOM05D007013 ORTHO05D008999 4.4e-87 325.9 310 54.5
SGA_v2.0_scaffold363G49936 Striga asiatica HOM05D007013 ORTHO05D008999 2.4e-85 320.1 416 44.0
Phvul.006G045700 Phaseolus vulgaris HOM05D007013 ORTHO05D008999 3.5e-84 316.2 298 55.4
Dinv22254 Davidia involucrata HOM05D007013 ORTHO05D008999 1.3e-78 297.7 271 57.6
Mapoly0002s0307 Marchantia polymorpha HOM05D007013 ORTHO05D008999 1.7e-78 297.4 391 44.0
PGSC0003DMG400022313 Solanum tuberosum HOM05D007013 ORTHO05D008999 1.1e-74 284.6 286 50.7
AUR62015801 Chenopodium quinoa HOM05D007013 ORTHO05D008999 4.9e-70 269.2 288 46.9
Lj1A874G27 Lonicera japonica HOM05D007013 ORTHO05D008999 2.7e-68 263.5 286 49.3
Rhsim06G0218600 Rhododendron simsii HOM05D007013 ORTHO05D008999 3.0e-67 260.0 273 50.9
SMO367G1261 Selaginella moellendorffii HOM05D007013 ORTHO05D008999 6.7e-67 258.8 373 40.8
Gohir.A01G080900 Gossypium hirsutum HOM05D007013 ORTHO05D008999 1.9e-66 257.3 314 45.2
CARHR096240 Cardamine hirsuta HOM05D007013 ORTHO05D008999 4.3e-58 229.6 208 53.8
SEGI_14581 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 1.2e-55 221.5 240 50.0
FAN16G0901 Fragaria x ananassa HOM05D007013 ORTHO05D008999 4.1e-48 196.4 99 100.0
Glyma.18G095300 Glycine max HOM05D007013 ORTHO05D008999 9.0e-48 195.3 219 47.9
Zm00001eb030850 Zea mays HOM05D007013 ORTHO05D008999 5.9e-47 192.6 191 51.8
Glyma.18G095150 Glycine max HOM05D007013 ORTHO05D008999 4.6e-44 183.0 277 39.4
Pp3c19_1630 Physcomitrium patens HOM05D007013 ORTHO05D008999 2.0e-42 177.6 399 32.3
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.7e-42 176.0 284 37.3
RcHm_v2.0_Chr4g0424981 Rosa chinensis HOM05D007013 ORTHO05D008999 2.5e-37 160.6 117 70.1
Os07g0102000 Oryza sativa ssp. japonica HOM05D007013 ORTHO05D008999 5.7e-34 149.4 199 41.2
CBR_g39764 Chara braunii HOM05D007013 ORTHO05D008999 6.3e-33 146.0 358 31.3
TWI34G0353 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 1.0e-22 112.1 128 45.3
CDE05G3055 Ceratophyllum demersum HOM05D007013 ORTHO05D008999 1.1e-21 108.6 235 33.6
SEGI_13858 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 4.7e-12 76.6 89 40.4
Zm00001eb030810 Zea mays HOM05D007013 ORTHO05D008999 8.8e-11 72.4 86 46.5
Medtr0152s0030 Medicago truncatula HOM05D007013 ORTHO05D008999 6.3e-09 66.2 100 38.0
Rhsim06G0218700 Rhododendron simsii HOM05D007013 ORTHO05D008999 6.3e-09 66.2 50 64.0
MELO3C022571.2 Cucumis melo HOM05D016993 ORTHO05D019020 7.0e-08 62.8 66 48.5
MELO3C029988.2 Cucumis melo HOM05D007013 ORTHO05D029173 9.2e-08 62.4 58 53.4
MELO3C025412.2 Cucumis melo HOM05D007013 ORTHO05D029173 1.0e-06 58.9 57 50.9
MELO3C029511.2 Cucumis melo HOM05D007013 ORTHO05D029173 6.6e-06 56.2 54 51.9


User provided reference genes

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