Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1205 Fragaria x ananassa HOM05D003577 ORTHO05D025039 1.4e-57 226.1 113 100.0
FAN25G2773 Fragaria x ananassa HOM05D003577 ORTHO05D025039 4.4e-24 114.8 65 86.2
CSS0016480 Camellia sinensis var. sinensis HOM05D003577 ORTHO05D004663 1.1e-17 93.6 64 71.9
CSS0037300 Camellia sinensis var. sinensis HOM05D003577 ORTHO05D004663 1.1e-17 93.6 64 71.9
THA.LOC104813333 Tarenaya hassleriana HOM05D003577 ORTHO05D004663 3.1e-17 92.0 64 71.9
Nitab4.5_0000312g0260 Nicotiana tabacum HOM05D003577 ORTHO05D004663 4.0e-17 91.7 64 70.3
MD16G1010900 Malus domestica HOM05D003577 ORTHO05D004663 5.2e-17 91.3 64 71.9
Nitab4.5_0012654g0010 Nicotiana tabacum HOM05D003577 ORTHO05D004663 5.2e-17 91.3 64 70.3
RcHm_v2.0_Chr4g0445541 Rosa chinensis HOM05D003577 ORTHO05D004663 8.9e-17 90.5 64 71.9
EL10Ac5g13048 Beta vulgaris HOM05D003577 ORTHO05D004663 1.5e-16 89.7 63 71.4
DCAR_027785 Daucus carota HOM05D003577 ORTHO05D004663 1.5e-16 89.7 62 71.0
Gohir.A08G171900 Gossypium hirsutum HOM05D003577 ORTHO05D004663 1.5e-16 89.7 64 70.3
Gohir.D08G190300 Gossypium hirsutum HOM05D003577 ORTHO05D004663 1.5e-16 89.7 64 70.3
Gorai.009G297700 Gossypium raimondii HOM05D003577 ORTHO05D004663 1.5e-16 89.7 64 70.3
Solyc08g078850.3 Solanum lycopersicum HOM05D003577 ORTHO05D004663 1.5e-16 89.7 64 68.8
DCAR_006822 Daucus carota HOM05D003577 ORTHO05D004663 2.0e-16 89.4 64 68.8
Sopen08g027320 Solanum pennellii HOM05D003577 ORTHO05D004663 2.0e-16 89.4 64 68.8
PGSC0003DMG400004800 Solanum tuberosum HOM05D003577 ORTHO05D004663 2.0e-16 89.4 63 69.8
PGSC0003DMG400012478 Solanum tuberosum HOM05D003577 ORTHO05D004663 2.0e-16 89.4 64 67.2
Actinidia14440 Actinidia chinensis HOM05D003577 ORTHO05D004663 2.6e-16 89.0 63 69.8
Duzib084G0825 Durio zibethinus HOM05D003577 ORTHO05D004663 2.6e-16 89.0 64 68.8
Solyc08g007420.3 Solanum lycopersicum HOM05D003577 ORTHO05D004663 2.6e-16 89.0 63 68.3
Sopen08g003370 Solanum pennellii HOM05D003577 ORTHO05D004663 2.6e-16 89.0 63 68.3
QL12p012793 Quercus lobata HOM05D003577 ORTHO05D004663 3.4e-16 88.6 64 70.3
TWI15G0060 Tripterygium wilfordii HOM05D003577 ORTHO05D004663 3.4e-16 88.6 64 67.2
BcaC06g33546 Brassica carinata HOM05D003577 ORTHO05D004663 4.4e-16 88.2 64 70.3
BcaNung00105 Brassica carinata HOM05D003577 ORTHO05D004663 4.4e-16 88.2 64 70.3
BcaNung03469 Brassica carinata HOM05D003577 ORTHO05D004663 4.4e-16 88.2 64 70.3
C07p48690 Brassica napus HOM05D003577 ORTHO05D004663 4.4e-16 88.2 64 70.3
BolC7t45376H Brassica oleracea HOM05D003577 ORTHO05D004663 4.4e-16 88.2 64 70.3
CSS0040266 Camellia sinensis var. sinensis HOM05D003577 ORTHO05D004663 4.4e-16 88.2 64 64.1
Duzib205G2002 Durio zibethinus HOM05D003577 ORTHO05D004663 4.4e-16 88.2 64 68.8
Thhalv10025596m.g Eutrema salsugineum HOM05D003577 ORTHO05D004663 4.4e-16 88.2 64 70.3
Carub.0007s2413 Capsella rubella HOM05D003577 ORTHO05D004663 5.8e-16 87.8 64 70.3
CARHR223890 Cardamine hirsuta HOM05D003577 ORTHO05D004663 5.8e-16 87.8 64 68.8
Sp7g16910 Schrenkiella parvula HOM05D003577 ORTHO05D004663 5.8e-16 87.8 64 70.3
BraA03t14127Z Brassica rapa HOM05D003577 ORTHO05D004663 7.5e-16 87.4 64 70.3
Cc08_g12720 Coffea canephora HOM05D003577 ORTHO05D004663 7.5e-16 87.4 64 70.3
Gohir.A12G219850 Gossypium hirsutum HOM05D003577 ORTHO05D004663 7.5e-16 87.4 64 68.8
Gohir.D12G222000 Gossypium hirsutum HOM05D003577 ORTHO05D004663 7.5e-16 87.4 64 68.8
Gorai.008G238000 Gossypium raimondii HOM05D003577 ORTHO05D004663 7.5e-16 87.4 64 68.8
Oeu062976.1 Olea europaea HOM05D003577 ORTHO05D004663 7.5e-16 87.4 64 68.8
Prupe.1G339800 Prunus persica HOM05D003577 ORTHO05D004663 7.5e-16 87.4 65 69.2
Aa31LG6G2900 Aethionema arabicum HOM05D003577 ORTHO05D004663 9.8e-16 87.0 64 68.8
AL7G37440 Arabidopsis lyrata HOM05D003577 ORTHO05D004663 9.8e-16 87.0 64 68.8
AT4G17260 Arabidopsis thaliana HOM05D003577 ORTHO05D004663 9.8e-16 87.0 64 68.8
CAN.G1218.7 Capsicum annuum HOM05D003577 ORTHO05D004663 9.8e-16 87.0 64 64.1
Cc08_g12710 Coffea canephora HOM05D003577 ORTHO05D004663 9.8e-16 87.0 64 70.3
Peaxi162Scf00002g01511 Petunia axillaris HOM05D003577 ORTHO05D004663 9.8e-16 87.0 64 68.8
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 9.8e-16 87.0 64 65.6
TWI15G1033 Tripterygium wilfordii HOM05D003577 ORTHO05D004663 1.3e-15 86.7 64 65.6
A01p20100 Brassica napus HOM05D003577 ORTHO05D004663 1.7e-15 86.3 64 68.8
BraA01t01934Z Brassica rapa HOM05D003577 ORTHO05D004663 1.7e-15 86.3 64 68.8
Phvul.002G062000 Phaseolus vulgaris HOM05D003577 ORTHO05D004663 1.7e-15 86.3 63 71.4
Actinidia02117 Actinidia chinensis HOM05D003577 ORTHO05D004663 2.2e-15 85.9 63 66.7
CiPaw.12G108500 Carya illinoinensis HOM05D003577 ORTHO05D004663 2.2e-15 85.9 64 68.8
Lj2g0000249 Lotus japonicus HOM05D003577 ORTHO05D004663 2.2e-15 85.9 63 69.8
Nitab4.5_0006367g0010 Nicotiana tabacum HOM05D003577 ORTHO05D004663 2.2e-15 85.9 64 64.1
Thecc.03G254200 Theobroma cacao HOM05D003577 ORTHO05D004663 2.2e-15 85.9 64 65.6
arahy.Tifrunner.gnm1.ann1.5G087V Arachis hypogaea HOM05D003577 ORTHO05D004663 2.9e-15 85.5 64 64.1
arahy.Tifrunner.gnm1.ann1.BE9V1M Arachis hypogaea HOM05D003577 ORTHO05D004663 2.9e-15 85.5 64 64.1
Eucgr.D02046 Eucalyptus grandis HOM05D003577 ORTHO05D004663 3.7e-15 85.1 63 63.5
Hma1.2p1_0753F.1_g212980 Hydrangea macrophylla HOM05D003577 ORTHO05D004663 3.7e-15 85.1 64 65.6
RcHm_v2.0_Chr7g0202841 Rosa chinensis HOM05D003577 ORTHO05D004663 3.7e-15 85.1 64 68.8
VMungo1215G0981 Vigna mungo HOM05D003577 ORTHO05D004663 3.7e-15 85.1 63 69.8
Ah.02g116790 Amaranthus hybridus HOM05D003577 ORTHO05D004663 4.9e-15 84.7 63 69.8
Lj4g0018948 Lotus japonicus HOM05D003577 ORTHO05D004663 4.9e-15 84.7 64 65.6
Pp3c21_11360 Physcomitrium patens HOM05D003577 ORTHO05D004663 4.9e-15 84.7 63 68.3
RcHm_v2.0_Chr4g0406091 Rosa chinensis HOM05D003577 ORTHO05D004663 4.9e-15 84.7 64 68.8
VMungo0251G3133 Vigna mungo HOM05D003577 ORTHO05D004663 4.9e-15 84.7 63 68.3
Nitab4.5_0004059g0040 Nicotiana tabacum HOM05D003577 ORTHO05D004663 6.4e-15 84.3 64 62.5
Peaxi162Scf00102g01136 Petunia axillaris HOM05D003577 ORTHO05D004663 6.4e-15 84.3 64 62.5
SEGI_18702 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 6.4e-15 84.3 61 62.3
SGA_v2.0_scaffold146G36158 Striga asiatica HOM05D003577 ORTHO05D004663 6.4e-15 84.3 64 62.5
GSVIVG01001303001 Vitis vinifera HOM05D003577 ORTHO05D004663 6.4e-15 84.3 64 67.2
CANSAT21G0247 Cannabis sativa HOM05D003577 ORTHO05D004663 8.3e-15 84.0 64 67.2
CANSAT21G2077 Cannabis sativa HOM05D003577 ORTHO05D004663 8.3e-15 84.0 63 69.8
Cpa.g.sc29.108 Carica papaya HOM05D003577 ORTHO05D004663 8.3e-15 84.0 64 67.2
Gohir.D03G162000 Gossypium hirsutum HOM05D003577 ORTHO05D004663 8.3e-15 84.0 63 66.7
Gorai.003G170500 Gossypium raimondii HOM05D003577 ORTHO05D004663 8.3e-15 84.0 63 66.7
Nn6g34005 Nelumbo nucifera HOM05D003577 ORTHO05D004663 8.3e-15 84.0 64 64.1
PSO782G2886 Papaver somniferum HOM05D003577 ORTHO05D004663 8.3e-15 84.0 64 64.1
Hund11614 Selenicereus undatus HOM05D003577 ORTHO05D004663 8.3e-15 84.0 63 66.7
vmacro14092 Vaccinium macrocarpon HOM05D003577 ORTHO05D004663 8.3e-15 84.0 64 64.1
ClCG01G003970 Citrullus lanatus HOM05D003577 ORTHO05D004663 1.1e-14 83.6 63 68.3
Ciclev10020910m.g Citrus clementina HOM05D003577 ORTHO05D004663 1.1e-14 83.6 64 67.2
unitig_0.g1061 Utricularia gibba HOM05D003577 ORTHO05D004663 1.1e-14 83.6 64 62.5
MSTRG.12085 Avicennia marina HOM05D003577 ORTHO05D004663 1.4e-14 83.2 64 60.9
CAN.G1227.9 Capsicum annuum HOM05D003577 ORTHO05D004663 1.4e-14 83.2 64 62.5
Eucgr.E00444 Eucalyptus grandis HOM05D003577 ORTHO05D004663 1.4e-14 83.2 64 62.5
Thhalv10025435m.g Eutrema salsugineum HOM05D003577 ORTHO05D004663 1.4e-14 83.2 64 67.2
Glyma.01G210400 Glycine max HOM05D003577 ORTHO05D004663 1.4e-14 83.2 63 68.3
Manes.02G038200 Manihot esculenta HOM05D003577 ORTHO05D004663 1.4e-14 83.2 63 66.7
SEGI_40617 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 1.4e-14 83.2 63 61.9
AagrBONN_evm.TU.Sc2ySwM_228.3813 Anthoceros agrestis HOM05D003577 ORTHO05D004663 1.9e-14 82.8 63 65.1
BcaC09g50459 Brassica carinata HOM05D003577 ORTHO05D004663 1.9e-14 82.8 64 67.2
C01p25250 Brassica napus HOM05D003577 ORTHO05D004663 1.9e-14 82.8 64 67.2
BolC1t02475H Brassica oleracea HOM05D003577 ORTHO05D004663 1.9e-14 82.8 64 67.2
AUR62007499 Chenopodium quinoa HOM05D003577 ORTHO05D004663 1.9e-14 82.8 63 68.3
FvH4_5g00090 Fragaria vesca HOM05D003577 ORTHO05D004663 1.9e-14 82.8 64 67.2
TAR375G0076 Trochodendron aralioides HOM05D003577 ORTHO05D004663 1.9e-14 82.8 64 67.2
CsaV3_5G004150 Cucumis sativus L. HOM05D003577 ORTHO05D004663 2.4e-14 82.4 63 68.3
FAN08G3105 Fragaria x ananassa HOM05D003577 ORTHO05D004663 2.4e-14 82.4 64 65.6
QL12p012756 Quercus lobata HOM05D003577 ORTHO05D004663 2.4e-14 82.4 64 65.6
Sabra01G0094200 Salix brachista HOM05D003577 ORTHO05D004663 2.4e-14 82.4 63 66.7
SalBow6G4668 Salvia bowleyana HOM05D003577 ORTHO05D004663 2.4e-14 82.4 64 64.1
FAN18G1797 Fragaria x ananassa HOM05D003577 ORTHO05D004663 3.2e-14 82.0 64 65.6
Medtr4g101130 Medicago truncatula HOM05D003577 ORTHO05D004663 3.2e-14 82.0 64 64.1
Pp3c18_10120 Physcomitrium patens HOM05D003577 ORTHO05D004663 3.2e-14 82.0 63 65.1
CiPaw.11G152300 Carya illinoinensis HOM05D003577 ORTHO05D004663 4.1e-14 81.6 64 64.1
Migut.A00960 Erythranthe guttata HOM05D003577 ORTHO05D004663 4.1e-14 81.6 64 62.5
QL12p012789 Quercus lobata HOM05D003577 ORTHO05D004663 4.1e-14 81.6 64 64.1
SalBow6G1855 Salvia bowleyana HOM05D003577 ORTHO05D004663 4.1e-14 81.6 63 61.9
Ah.12g056680 Amaranthus hybridus HOM05D003577 ORTHO05D004663 5.4e-14 81.3 63 65.1
AUR62039952 Chenopodium quinoa HOM05D003577 ORTHO05D004663 5.4e-14 81.3 63 66.7
Dinv39124 Davidia involucrata HOM05D003577 ORTHO05D004663 5.4e-14 81.3 64 64.1
FAN04G1063 Fragaria x ananassa HOM05D003577 ORTHO05D004663 5.4e-14 81.3 64 65.6
Gohir.A03G008900 Gossypium hirsutum HOM05D003577 ORTHO05D004663 5.4e-14 81.3 63 65.1
Manes.01G079100 Manihot esculenta HOM05D003577 ORTHO05D004663 5.4e-14 81.3 63 65.1
SEGI_41296 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 5.4e-14 81.3 63 60.3
Glyma.17G140600 Glycine max HOM05D003577 ORTHO05D004663 7.0e-14 80.9 63 66.7
Psat4g070040 Pisum sativum HOM05D003577 ORTHO05D004663 7.0e-14 80.9 64 64.1
PGR042G0879 Punica granatum HOM05D003577 ORTHO05D004663 7.0e-14 80.9 64 60.9
Haze_07878 Corylus avellana HOM05D003577 ORTHO05D004663 1.2e-13 80.1 64 64.1
Sc22g0000780 Simmondsia chinensis HOM05D003577 ORTHO05D004663 1.2e-13 80.1 64 64.1
Glyma.05G058100 Glycine max HOM05D003577 ORTHO05D004663 1.6e-13 79.7 63 66.7
Psat6g166680 Pisum sativum HOM05D003577 ORTHO05D004663 1.6e-13 79.7 63 65.1
PGR031G3899 Punica granatum HOM05D003577 ORTHO05D004663 1.6e-13 79.7 63 65.1
Aqoxy5G03916 Aquilegia oxysepala HOM05D003577 ORTHO05D004663 2.0e-13 79.3 64 65.6
Ca_24570_v3 Cicer arietinum L. HOM05D003577 ORTHO05D004663 2.0e-13 79.3 63 65.1
Medtr5g012390 Medicago truncatula HOM05D003577 ORTHO05D004663 2.0e-13 79.3 63 65.1
Potri.001G122400 Populus trichocarpa HOM05D003577 ORTHO05D004663 2.0e-13 79.3 63 63.5
Prupe.5G072700 Prunus persica HOM05D003577 ORTHO05D004663 2.0e-13 79.3 64 62.5
Pp3c22_12920 Physcomitrium patens HOM05D003577 ORTHO05D004663 2.7e-13 79.0 63 63.5
Psat4g070120 Pisum sativum HOM05D003577 ORTHO05D004663 2.7e-13 79.0 64 62.5
MELO3C005539.2 Cucumis melo HOM05D003577 ORTHO05D004663 3.5e-13 78.6 63 65.1
MBI04_g03669_MAGBIO Magnolia biondii HOM05D003577 ORTHO05D004663 3.5e-13 78.6 64 62.5
Potri.003G111201 Populus trichocarpa HOM05D003577 ORTHO05D004663 3.5e-13 78.6 63 65.1
Potri.008G135920 Populus trichocarpa HOM05D003577 ORTHO05D004663 3.5e-13 78.6 63 65.1
unitig_0.g1064 Utricularia gibba HOM05D003577 ORTHO05D004663 3.5e-13 78.6 64 57.8
Atru.chr9.1341 Acer truncatum HOM05D003577 ORTHO05D004663 4.6e-13 78.2 64 64.1
Lalb_Chr05g0225731 Lupinus albus HOM05D003577 ORTHO05D004663 4.6e-13 78.2 64 59.4
Os02g0105400 Oryza sativa ssp. japonica HOM05D003577 ORTHO05D004663 4.6e-13 78.2 63 61.9
Phvul.003G219400 Phaseolus vulgaris HOM05D003577 ORTHO05D004663 4.6e-13 78.2 64 62.5
GSVIVG01027640001 Vitis vinifera HOM05D003577 ORTHO05D004663 4.6e-13 78.2 64 64.1
Lj2C215G3 Lonicera japonica HOM05D003577 ORTHO05D004663 6.0e-13 77.8 64 65.6
Sabra03G0077100 Salix brachista HOM05D003577 ORTHO05D004663 6.0e-13 77.8 63 63.5
TAR263G0002 Trochodendron aralioides HOM05D003577 ORTHO05D004663 6.0e-13 77.8 64 59.4
Atru.chr9.1342 Acer truncatum HOM05D003577 ORTHO05D004663 7.8e-13 77.4 64 62.5
Cfa012750 Carpinus fangiana HOM05D003577 ORTHO05D004663 7.8e-13 77.4 64 64.1
Sed0005868 Sechium edule HOM05D003577 ORTHO05D004663 7.8e-13 77.4 63 63.5
SEGI_37574 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 7.8e-13 77.4 63 57.1
Zm00001eb229440 Zea mays HOM05D003577 ORTHO05D004663 1.0e-12 77.0 64 59.4
SEGI_01079 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 2.3e-12 75.9 63 57.1
Nn6g34004 Nelumbo nucifera HOM05D003577 ORTHO05D004663 3.0e-12 75.5 64 60.9
ECA233G5538 Erigeron canadensis HOM05D003577 ORTHO05D004663 3.9e-12 75.1 64 60.9
HanXRQChr17g0549811 Helianthus annuus HOM05D003577 ORTHO05D004663 5.0e-12 74.7 64 59.4
SMO356G0074 Selaginella moellendorffii HOM05D003577 ORTHO05D004663 5.0e-12 74.7 61 55.7
HanXRQChr06g0164341 Helianthus annuus HOM05D003577 ORTHO05D004663 6.6e-12 74.3 63 63.5
Lsat_1_v5_gn_3_740 Lactuca sativa HOM05D003577 ORTHO05D004663 6.6e-12 74.3 64 62.5
Mapoly0049s0082 Marchantia polymorpha HOM05D003577 ORTHO05D004663 8.6e-12 73.9 61 54.1
Zm00001eb229430 Zea mays HOM05D003577 ORTHO05D004663 1.5e-11 73.2 63 58.7
Lsat_1_v5_gn_6_3021 Lactuca sativa HOM05D003577 ORTHO05D004663 1.9e-11 72.8 64 60.9
CBR_g24220 Chara braunii HOM05D003577 ORTHO05D004663 3.3e-11 72.0 63 57.1
Ca_22502_v3 Cicer arietinum L. HOM05D003577 ORTHO05D025039 5.6e-11 71.2 64 57.8
Ca_29568_v3 Cicer arietinum L. HOM05D003577 ORTHO05D025039 5.6e-11 71.2 64 57.8
HanXRQChr13g0396351 Helianthus annuus HOM05D003577 ORTHO05D004663 3.6e-10 68.6 64 56.2
SMO116G0389 Selaginella moellendorffii HOM05D003577 ORTHO05D004663 4.7e-10 68.2 118 39.0
Os06g0104900 Oryza sativa ssp. japonica HOM05D003577 ORTHO05D004663 6.2e-10 67.8 63 54.0
CDE12G0646 Ceratophyllum demersum HOM05D003577 ORTHO05D004663 1.1e-09 67.0 64 59.4
ATR0681G358 Amborella trichopoda HOM05D003577 ORTHO05D004663 1.2e-08 63.5 63 49.2
THA.LOC104798465 Tarenaya hassleriana HOM05D003577 ORTHO05D004663 2.9e-07 58.9 64 56.2


User provided reference genes

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