Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.5e-286 988.8 499 100.0
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.0e-278 961.8 507 95.7
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 4.4e-278 960.7 505 96.2
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 6.4e-277 956.8 506 95.7
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 5.4e-268 927.2 502 92.2
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 5.0e-229 797.7 506 80.4
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 8.2e-224 780.4 490 81.4
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 8.2e-224 780.4 508 78.9
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 4.4e-217 758.1 492 76.6
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 7.5e-217 757.3 487 78.6
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 4.1e-215 751.5 488 77.5
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 2.7e-214 748.8 489 77.5
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 1.7e-213 746.1 501 75.0
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 5.0e-213 744.6 490 77.8
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 1.9e-212 742.7 503 75.0
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 6.1e-211 737.6 489 77.7
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 1.0e-210 736.9 485 76.3
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 8.8e-210 733.8 491 74.9
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 2.6e-209 732.3 490 75.7
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.6e-209 732.3 485 75.9
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 7.5e-209 730.7 484 76.0
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 3.7e-208 728.4 486 75.7
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 3.7e-208 728.4 486 75.7
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.7e-208 728.4 485 76.1
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 4.8e-208 728.0 487 75.2
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 4.8e-208 728.0 484 75.6
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 8.3e-208 727.2 510 73.5
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.1e-207 726.9 485 75.9
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.4e-207 725.7 496 74.8
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 1.6e-206 723.0 485 75.5
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 2.0e-206 722.6 489 74.6
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 2.7e-206 722.2 497 73.6
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 4.5e-206 721.5 497 73.2
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 5.9e-206 721.1 485 74.8
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 5.0e-205 718.0 487 73.1
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 6.6e-205 717.6 483 74.7
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 8.6e-205 717.2 501 72.1
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.9e-204 716.1 489 74.4
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.9e-204 716.1 489 74.4
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 3.3e-204 715.3 506 72.1
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.2e-204 714.9 496 73.2
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 2.1e-203 712.6 490 72.9
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 4.7e-203 711.4 488 74.0
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 2.3e-202 709.1 482 73.4
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 3.0e-202 708.8 487 73.3
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.0e-201 706.1 504 71.6
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 4.4e-201 704.9 491 72.5
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 4.4e-201 704.9 486 74.5
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 4.4e-201 704.9 486 74.5
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 4.4e-201 704.9 485 73.6
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 4.4e-201 704.9 502 72.1
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 7.5e-201 704.1 490 72.7
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 9.8e-201 703.7 488 73.0
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 1.3e-200 703.4 494 72.3
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 1.7e-200 703.0 491 72.7
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 1.7e-200 703.0 487 73.3
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 2.2e-200 702.6 490 71.6
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 2.2e-200 702.6 487 73.1
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 2.8e-200 702.2 492 72.0
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 4.9e-200 701.4 492 72.0
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 4.9e-200 701.4 495 72.3
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 4.9e-200 701.4 489 72.2
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 4.9e-200 701.4 489 73.2
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 4.9e-200 701.4 490 72.2
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 6.3e-200 701.0 490 72.0
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 6.3e-200 701.0 488 72.7
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 1.1e-199 700.3 490 71.2
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 1.1e-199 700.3 490 71.2
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.1e-199 700.3 491 72.1
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.4e-199 699.9 490 72.7
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 1.8e-199 699.5 499 71.3
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.4e-199 699.1 490 72.4
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 2.4e-199 699.1 490 71.8
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 5.4e-199 698.0 491 72.3
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 5.4e-199 698.0 504 71.6
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 7.0e-199 697.6 488 72.1
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 9.2e-199 697.2 510 70.6
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 1.2e-198 696.8 505 70.7
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.2e-198 696.8 491 71.9
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 1.6e-198 696.4 528 68.2
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 2.7e-198 695.7 501 70.5
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 5.9e-198 694.5 489 71.8
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 1.0e-197 693.7 496 72.2
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 2.9e-197 692.2 480 73.8
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 1.1e-196 690.3 497 70.8
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 3.3e-196 688.7 493 70.8
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 5.6e-196 688.0 486 71.8
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 7.3e-196 687.6 500 70.0
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 1.2e-195 686.8 479 72.9
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 6.1e-195 684.5 480 72.3
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.0e-194 683.7 484 70.7
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.3e-194 682.6 487 71.5
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 4.0e-194 681.8 525 67.4
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.3e-192 676.8 498 69.1
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 6.0e-190 667.9 480 70.4
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 6.6e-189 664.5 486 68.3
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 9.5e-188 660.6 502 68.7
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 1.2e-187 660.2 489 68.1
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 1.6e-187 659.8 486 69.8
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 1.6e-187 659.8 506 67.2
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 3.1e-186 655.6 477 69.2
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 5.8e-185 651.4 479 69.9
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 2.9e-184 649.0 516 66.1
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 3.2e-183 645.6 479 68.5
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 4.1e-183 645.2 577 59.3
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 2.1e-182 642.9 490 65.5
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 6.6e-181 637.9 455 71.2
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 1.5e-180 636.7 567 61.9
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.5e-180 636.7 492 65.7
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 3.6e-179 632.1 487 66.5
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 8.1e-179 630.9 488 65.8
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 1.8e-178 629.8 490 68.2
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 1.8e-178 629.8 501 63.5
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 3.1e-178 629.0 489 65.0
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 2.9e-176 622.5 492 63.6
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.9e-175 619.8 480 67.7
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 8.6e-173 610.9 476 66.8
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 1.1e-172 610.5 500 61.8
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 1.5e-172 610.1 475 67.8
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 2.1e-171 606.3 485 64.9
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 2.0e-169 599.7 484 64.0
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 4.6e-166 588.6 480 65.0
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.7e-165 586.6 481 63.0
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.1e-162 575.9 407 72.5
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 4.3e-156 555.4 505 60.8
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 7.1e-151 538.1 375 73.1
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 7.1e-151 538.1 457 60.0
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 5.1e-149 531.9 525 54.5
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.3e-144 517.3 402 66.4
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 2.2e-144 516.5 491 56.0
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 8.4e-144 514.6 357 73.9
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.0e-142 508.4 388 70.1
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 5.1e-141 505.4 383 69.5
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.7e-141 505.0 347 74.4
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 9.6e-140 501.1 549 52.6
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.1e-138 496.1 355 72.1
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 3.5e-134 482.6 366 67.8
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.7e-126 456.4 399 62.7
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 6.1e-126 455.3 357 66.7
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 4.7e-118 429.1 313 70.6
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 7.9e-118 428.3 464 51.1
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 7.7e-113 411.8 291 70.1
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.0e-109 399.8 280 72.9
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.8e-107 393.3 261 74.7
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 4.8e-107 392.5 275 72.7
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.0e-80 305.1 236 64.8
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.6e-80 302.4 191 78.0
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.5e-76 288.9 171 81.9
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 2.2e-75 287.3 476 37.2
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 8.3e-75 285.4 250 64.4
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 2.7e-65 253.8 205 68.8
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 7.1e-58 229.2 190 58.9
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 8.1e-54 215.7 134 80.6
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 8.1e-54 215.7 320 42.5
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 8.4e-51 205.7 132 78.0
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 8.4e-51 205.7 229 51.1
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 1.7e-48 198.0 148 68.9
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 6.6e-48 196.1 130 72.3
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 1.5e-47 194.9 140 70.0
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.4e-44 183.7 114 77.2
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 1.7e-43 181.4 294 43.9
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.1e-38 164.5 114 71.1
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 1.4e-37 161.8 113 66.4
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 2.6e-36 157.5 97 77.3
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 2.6e-36 157.5 97 77.3
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 2.1e-30 137.9 205 41.5
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 9.3e-26 122.5 77 79.2
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 7.9e-25 119.4 97 66.0
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 5.1e-24 116.7 101 65.3
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 8.7e-24 115.9 63 90.5
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 7.4e-23 112.8 60 90.0
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 6.9e-21 106.3 64 81.2
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 4.5e-20 103.6 77 68.8
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 5.9e-20 103.2 64 78.1
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.7e-19 101.7 64 76.6
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 2.2e-19 101.3 67 71.6
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 9.3e-18 95.9 65 75.4
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 1.2e-17 95.5 187 38.0
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.7e-17 94.4 76 67.1
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 2.2e-11 74.7 46 71.7
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 9.4e-10 69.3 48 81.2


User provided reference genes

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