Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1033 Fragaria x ananassa HOM05D005659 ORTHO05D007059 1.4e-110 402.9 198 100.0
FAN21G2850 Fragaria x ananassa HOM05D005659 ORTHO05D007059 6.0e-77 291.2 142 98.6
FAN25G1572 Fragaria x ananassa HOM05D005659 ORTHO05D007059 1.5e-75 286.6 142 96.5
FAN11G1786 Fragaria x ananassa HOM05D005659 ORTHO05D007059 3.3e-75 285.4 142 96.5
FvH4_3g25770 Fragaria vesca HOM05D005659 ORTHO05D007059 2.8e-74 282.3 142 95.8
RcHm_v2.0_Chr5g0046981 Rosa chinensis HOM05D005659 ORTHO05D007059 7.1e-70 267.7 144 91.0
Prupe.6G137400 Prunus persica HOM05D005659 ORTHO05D007059 6.7e-60 234.6 144 78.5
MD03G1150500 Malus domestica HOM05D005659 ORTHO05D007059 3.7e-58 228.8 143 76.2
MD11G1169900 Malus domestica HOM05D005659 ORTHO05D007059 4.1e-57 225.3 143 76.2
CANSAT54G0546 Cannabis sativa HOM05D005659 ORTHO05D007059 1.2e-56 223.8 148 75.7
Oeu002356.1 Olea europaea HOM05D005659 ORTHO05D007059 2.9e-55 219.2 152 73.0
Cfa009983 Carpinus fangiana HOM05D005659 ORTHO05D007059 1.4e-54 216.9 152 73.0
Haze_23342 Corylus avellana HOM05D005659 ORTHO05D007059 2.5e-54 216.1 152 72.4
Sabra04G0134500 Salix brachista HOM05D005659 ORTHO05D007059 4.6e-53 211.8 151 70.2
CiPaw.14G097600 Carya illinoinensis HOM05D005659 ORTHO05D007059 1.0e-52 210.7 153 69.3
Peaxi162Scf00091g00713 Petunia axillaris HOM05D005659 ORTHO05D007059 1.0e-52 210.7 143 72.0
Atru.chr3.3161 Acer truncatum HOM05D005659 ORTHO05D007059 1.8e-52 209.9 146 73.3
BcaB07g34086 Brassica carinata HOM05D005659 ORTHO05D007059 1.8e-52 209.9 145 72.4
C05p06520 Brassica napus HOM05D005659 ORTHO05D007059 1.8e-52 209.9 145 72.4
BolC5t29412H Brassica oleracea HOM05D005659 ORTHO05D007059 1.8e-52 209.9 145 72.4
PGSC0003DMG400005890 Solanum tuberosum HOM05D005659 ORTHO05D007059 1.8e-52 209.9 143 72.7
Cc01_g08780 Coffea canephora HOM05D005659 ORTHO05D007059 3.0e-52 209.1 151 70.2
Nitab4.5_0006903g0010 Nicotiana tabacum HOM05D005659 ORTHO05D007059 3.0e-52 209.1 146 71.9
AT1G08380 Arabidopsis thaliana HOM05D005659 ORTHO05D007059 3.9e-52 208.8 143 69.9
BcaC07g42532 Brassica carinata HOM05D005659 ORTHO05D007059 3.9e-52 208.8 145 71.7
BolC8t52533H Brassica oleracea HOM05D005659 ORTHO05D007059 3.9e-52 208.8 145 70.3
CARHR008270 Cardamine hirsuta HOM05D005659 ORTHO05D007059 5.1e-52 208.4 142 69.0
BcaB03g13338 Brassica carinata HOM05D005659 ORTHO05D007059 6.7e-52 208.0 145 69.7
Potri.004G199400 Populus trichocarpa HOM05D005659 ORTHO05D007059 6.7e-52 208.0 151 70.2
A09p65930 Brassica napus HOM05D005659 ORTHO05D007059 8.7e-52 207.6 145 70.3
BraA09t41937Z Brassica rapa HOM05D005659 ORTHO05D007059 8.7e-52 207.6 145 70.3
Carub.0001s0773 Capsella rubella HOM05D005659 ORTHO05D007059 8.7e-52 207.6 143 69.2
Potri.009G160800 Populus trichocarpa HOM05D005659 ORTHO05D007059 8.7e-52 207.6 152 69.1
Ca_26075_v3 Cicer arietinum L. HOM05D005659 ORTHO05D007059 1.5e-51 206.8 145 73.8
Solyc06g074200.4 Solanum lycopersicum HOM05D005659 ORTHO05D007059 1.5e-51 206.8 143 71.3
Sopen06g030620 Solanum pennellii HOM05D005659 ORTHO05D007059 1.5e-51 206.8 143 71.3
CAN.G919.41 Capsicum annuum HOM05D005659 ORTHO05D007059 1.9e-51 206.5 142 70.4
Sed0025059 Sechium edule HOM05D005659 ORTHO05D007059 1.9e-51 206.5 145 73.1
Gohir.D05G082100 Gossypium hirsutum HOM05D005659 ORTHO05D007059 2.5e-51 206.1 148 70.3
Aa31sc785G10 Aethionema arabicum HOM05D005659 ORTHO05D007059 3.3e-51 205.7 146 70.5
SalBow6G0820 Salvia bowleyana HOM05D005659 ORTHO05D007059 3.3e-51 205.7 145 70.3
Sp1g07030 Schrenkiella parvula HOM05D005659 ORTHO05D007059 3.3e-51 205.7 145 69.0
BcaC07g41946 Brassica carinata HOM05D005659 ORTHO05D007059 5.7e-51 204.9 145 69.7
C08p50030 Brassica napus HOM05D005659 ORTHO05D007059 5.7e-51 204.9 145 69.7
A06p05400 Brassica napus HOM05D005659 ORTHO05D007059 7.4e-51 204.5 145 71.7
BraA06t23749Z Brassica rapa HOM05D005659 ORTHO05D007059 7.4e-51 204.5 145 71.7
CsaV3_1G015100 Cucumis sativus L. HOM05D005659 ORTHO05D007059 7.4e-51 204.5 147 71.4
Gohir.A05G079200 Gossypium hirsutum HOM05D005659 ORTHO05D007059 7.4e-51 204.5 148 69.6
Gorai.009G083700 Gossypium raimondii HOM05D005659 ORTHO05D007059 9.7e-51 204.1 148 69.6
Ciclev10029515m.g Citrus clementina HOM05D005659 ORTHO05D007059 1.3e-50 203.8 144 70.8
SGA_v2.0_scaffold7G03995 Striga asiatica HOM05D005659 ORTHO05D007059 1.6e-50 203.4 146 69.9
GSVIVG01036077001 Vitis vinifera HOM05D005659 ORTHO05D007059 2.2e-50 203.0 151 68.2
DCAR_012226 Daucus carota HOM05D005659 ORTHO05D007059 2.8e-50 202.6 148 69.6
vmacro14338 Vaccinium macrocarpon HOM05D005659 ORTHO05D007059 2.8e-50 202.6 144 69.4
Duzib170G0332 Durio zibethinus HOM05D005659 ORTHO05D007059 3.7e-50 202.2 149 66.4
Manes.04G000900 Manihot esculenta HOM05D005659 ORTHO05D007059 3.7e-50 202.2 154 69.5
Medtr4g052420 Medicago truncatula HOM05D005659 ORTHO05D007059 3.7e-50 202.2 143 70.6
Psat7g186640 Pisum sativum HOM05D005659 ORTHO05D007059 3.7e-50 202.2 144 72.2
Sabra09G0125800 Salix brachista HOM05D005659 ORTHO05D007059 3.7e-50 202.2 152 66.4
TWI75G1160 Tripterygium wilfordii HOM05D005659 ORTHO05D007059 3.7e-50 202.2 153 66.0
MSTRG.18774 Avicennia marina HOM05D005659 ORTHO05D007059 8.2e-50 201.1 141 70.2
PSO339G3866 Papaver somniferum HOM05D005659 ORTHO05D007059 8.2e-50 201.1 145 69.0
Cpa.g.sc195.32 Carica papaya HOM05D005659 ORTHO05D007059 1.1e-49 200.7 152 67.1
Eucgr.B03824 Eucalyptus grandis HOM05D005659 ORTHO05D007059 1.1e-49 200.7 146 69.2
Gohir.D07G115000 Gossypium hirsutum HOM05D005659 ORTHO05D007059 1.1e-49 200.7 148 68.2
Gorai.001G123200 Gossypium raimondii HOM05D005659 ORTHO05D007059 1.8e-49 199.9 148 68.2
PSO384G5049 Papaver somniferum HOM05D005659 ORTHO05D007059 1.8e-49 199.9 145 69.0
Thecc.09G277800 Theobroma cacao HOM05D005659 ORTHO05D007059 3.1e-49 199.1 148 67.6
MELO3C025587.2 Cucumis melo HOM05D005659 ORTHO05D007059 4.1e-49 198.7 115 79.1
TPR.G17220 Trifolium pratense HOM05D005659 ORTHO05D007059 4.1e-49 198.7 145 69.7
Sc12g0004680 Simmondsia chinensis HOM05D005659 ORTHO05D007059 5.3e-49 198.4 150 64.0
CSS0045008 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 6.9e-49 198.0 145 71.7
ECA236G2734 Erigeron canadensis HOM05D005659 ORTHO05D007059 6.9e-49 198.0 142 70.4
Lj3g0027363 Lotus japonicus HOM05D005659 ORTHO05D007059 9.0e-49 197.6 145 70.3
CSS0022105 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 1.2e-48 197.2 153 68.6
HanXRQChr04g0128561 Helianthus annuus HOM05D005659 ORTHO05D007059 1.5e-48 196.8 142 70.4
Hma1.2p1_2164F.1_g315750 Hydrangea macrophylla HOM05D005659 ORTHO05D007059 1.5e-48 196.8 156 66.7
EL10Ac4g08175 Beta vulgaris HOM05D005659 ORTHO05D007059 3.4e-48 195.7 148 68.2
A08p35240 Brassica napus HOM05D005659 ORTHO05D007059 7.7e-48 194.5 134 69.4
Migut.D02409 Erythranthe guttata HOM05D005659 ORTHO05D007059 7.7e-48 194.5 112 78.6
THA.LOC104826438 Tarenaya hassleriana HOM05D005659 ORTHO05D007059 1.0e-47 194.1 147 65.3
unitig_0.g1472 Utricularia gibba HOM05D005659 ORTHO05D007059 1.0e-47 194.1 128 73.4
Aqoxy4G02709 Aquilegia oxysepala HOM05D005659 ORTHO05D007059 1.7e-47 193.4 149 62.4
Dinv22811 Davidia involucrata HOM05D005659 ORTHO05D007059 1.7e-47 193.4 112 79.5
PGR102G0055 Punica granatum HOM05D005659 ORTHO05D007059 8.5e-47 191.0 147 66.0
Glyma.11G181100 Glycine max HOM05D005659 ORTHO05D007059 1.1e-46 190.7 146 67.1
MBI17_g28186_MAGBIO Magnolia biondii HOM05D005659 ORTHO05D007059 1.9e-46 189.9 144 65.3
CDE08G1285 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 2.5e-46 189.5 143 65.7
AL1G18790 Arabidopsis lyrata HOM05D005659 ORTHO05D007059 3.2e-46 189.1 116 74.1
Lalb_Chr03g0028281 Lupinus albus HOM05D005659 ORTHO05D007059 3.2e-46 189.1 147 68.7
Glyma.12G092000 Glycine max HOM05D005659 ORTHO05D007059 4.2e-46 188.7 146 68.5
VMungo1127G0741 Vigna mungo HOM05D005659 ORTHO05D007059 7.2e-46 188.0 147 65.3
Phvul.011G096400 Phaseolus vulgaris HOM05D005659 ORTHO05D007059 4.6e-45 185.3 147 64.6
CDE02G1582 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 6.1e-45 184.9 143 62.9
Actinidia37070 Actinidia chinensis HOM05D005659 ORTHO05D007059 1.4e-44 183.7 142 66.2
BraA08t35432Z Brassica rapa HOM05D005659 ORTHO05D007059 1.4e-44 183.7 134 67.9
Os04g0414700 Oryza sativa ssp. japonica HOM05D005659 ORTHO05D007059 5.1e-44 181.8 138 63.8
arahy.Tifrunner.gnm1.ann1.QDSR7W Arachis hypogaea HOM05D005659 ORTHO05D007059 2.5e-43 179.5 140 66.4
C08p03620 Brassica napus HOM05D005659 ORTHO05D007059 4.3e-43 178.7 115 72.2
ATR0579G079 Amborella trichopoda HOM05D005659 ORTHO05D007059 5.7e-43 178.3 148 61.5
arahy.Tifrunner.gnm1.ann1.MVQ7LV Arachis hypogaea HOM05D005659 ORTHO05D007059 7.4e-43 177.9 140 66.4
HPP92_009876 Vanilla planifolia HOM05D005659 ORTHO05D007059 1.3e-42 177.2 140 64.3
Zm00001eb083680 Zea mays HOM05D005659 ORTHO05D007059 4.8e-42 175.3 96 79.2
Actinidia35474 Actinidia chinensis HOM05D005659 ORTHO05D007059 6.3e-42 174.9 143 63.6
Lsat_1_v5_gn_7_85921 Lactuca sativa HOM05D005659 ORTHO05D007059 6.3e-42 174.9 169 58.6
EL10Ac4g08170 Beta vulgaris HOM05D005659 ORTHO05D007059 3.1e-41 172.6 112 73.2
ClCG01G011760 Citrullus lanatus HOM05D005659 ORTHO05D007059 1.0e-39 167.5 86 84.9
Nitab4.5_0000937g0110 Nicotiana tabacum HOM05D005659 ORTHO05D007059 3.8e-39 165.6 84 85.7
SEGI_08129 Sequoiadendron giganteum HOM05D005659 ORTHO05D007059 1.9e-38 163.3 137 60.6
SMO163G0051 Selaginella moellendorffii HOM05D005659 ORTHO05D007059 4.7e-37 158.7 91 78.0
Pp3c15_16690 Physcomitrium patens HOM05D005659 ORTHO05D007059 1.0e-36 157.5 142 58.5
Pp3c15_16700 Physcomitrium patens HOM05D005659 ORTHO05D007059 1.4e-36 157.1 137 60.6
Mapoly0064s0077 Marchantia polymorpha HOM05D005659 ORTHO05D007059 1.8e-36 156.8 148 56.1
QL01p011787 Quercus lobata HOM05D005659 ORTHO05D007059 9.7e-35 151.0 116 68.1
TAR633G2174 Trochodendron aralioides HOM05D005659 ORTHO05D007059 3.1e-33 146.0 121 62.0
Nn2g14238 Nelumbo nucifera HOM05D005659 ORTHO05D007059 7.0e-33 144.8 121 62.0
BcaB03g13340 Brassica carinata HOM05D005659 ORTHO05D007059 5.9e-32 141.7 119 59.7
Rhsim01G0203000 Rhododendron simsii HOM05D005659 ORTHO05D007059 2.9e-31 139.4 109 64.2
AUR62001528 Chenopodium quinoa HOM05D005659 ORTHO05D007059 1.0e-28 131.0 121 59.5
Hund18778 Selenicereus undatus HOM05D005659 ORTHO05D007059 1.4e-28 130.6 121 58.7
ATR0772G031 Amborella trichopoda HOM05D005659 ORTHO05D007059 3.0e-28 129.4 121 57.0
unitig_88.g27645 Utricularia gibba HOM05D005659 ORTHO05D007059 4.0e-28 129.0 68 83.8
Nitab4.5_0005472g0080 Nicotiana tabacum HOM05D005659 ORTHO05D007059 3.3e-27 125.9 115 64.3
Thhalv10009047m.g Eutrema salsugineum HOM05D005659 ORTHO05D007059 3.1e-25 119.4 142 46.5
Ah.08g223250 Amaranthus hybridus HOM05D005659 ORTHO05D007059 1.3e-23 114.0 124 55.6
Cre07.g334550 Chlamydomonas reinhardtii HOM05D005659 ORTHO05D007059 1.8e-20 103.6 106 47.2
TAR623G1200 Trochodendron aralioides HOM05D005659 ORTHO05D007059 1.3e-18 97.4 92 59.8
MCO01G581 Micromonas commoda HOM05D005659 ORTHO05D007059 8.3e-18 94.7 92 46.7
MD17G1209900 Malus domestica HOM05D005659 ORTHO05D007059 9.4e-14 81.3 72 62.5
MD11G1234000 Malus domestica HOM05D005659 ORTHO05D007059 1.2e-13 80.9 72 62.5
Manes.11G164551 Manihot esculenta HOM05D005659 ORTHO05D007059 2.1e-13 80.1 91 49.5
Peaxi162Scf00345g01024 Petunia axillaris HOM05D005659 ORTHO05D007059 6.1e-13 78.6 160 38.1
Nitab4.5_0003068g0060 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.4e-09 67.4 69 59.4
Gohir.A07G111250 Gossypium hirsutum HOM05D005659 ORTHO05D007059 1.0e-07 61.2 71 53.5


User provided reference genes

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