Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.1e-240 836.3 416 100.0
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.9e-224 780.4 421 93.3
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 1.7e-222 775.8 421 92.9
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.3e-217 759.6 421 91.0
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.1e-203 711.1 421 87.4
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 2.1e-180 636.0 427 76.1
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 5.0e-150 535.0 440 64.3
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 4.1e-136 488.8 432 60.9
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 1.9e-133 479.9 430 60.0
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 2.2e-129 466.5 427 57.8
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 9.2e-128 461.1 426 56.8
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 7.8e-127 458.0 401 60.8
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 1.6e-124 450.3 423 55.3
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 1.5e-122 443.7 424 55.0
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 1.3e-118 430.6 422 53.3
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 1.2e-114 417.5 421 51.1
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 1.5e-114 417.2 422 50.9
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 5.8e-114 415.2 421 51.5
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 5.8e-114 415.2 419 49.9
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 4.2e-112 409.1 422 51.2
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 1.2e-111 407.5 332 63.6
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.5e-111 406.0 407 56.3
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 2.5e-109 399.8 421 49.4
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 3.3e-109 399.4 425 51.3
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 4.8e-108 395.6 422 51.2
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 1.1e-107 394.4 426 49.5
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 4.5e-106 389.0 424 49.1
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 9.9e-106 387.9 425 47.8
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 1.3e-105 387.5 425 49.9
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 4.9e-105 385.6 421 49.4
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 6.4e-105 385.2 425 50.1
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 1.9e-104 383.6 423 49.4
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 6.0e-103 378.6 419 49.9
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 1.0e-102 377.9 424 47.6
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 2.3e-102 376.7 377 50.9
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 3.0e-102 376.3 424 46.9
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 5.1e-102 375.6 421 47.3
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 5.1e-102 375.6 422 47.2
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 8.7e-102 374.8 423 49.4
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.3e-100 370.9 424 47.2
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.1e-99 367.9 427 47.5
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 1.8e-99 367.1 427 47.8
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 3.1e-99 366.3 427 47.1
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 9.0e-99 364.8 393 48.6
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 1.5e-98 364.0 425 45.2
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 2.0e-98 363.6 421 47.5
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 5.8e-98 362.1 418 46.4
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.3e-97 360.9 426 48.6
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.3e-97 360.9 426 48.6
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.7e-97 360.5 421 47.3
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 6.4e-97 358.6 418 46.2
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 1.9e-96 357.1 396 49.5
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 1.9e-96 357.1 421 49.2
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 4.2e-96 355.9 380 49.7
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 4.2e-96 355.9 421 47.0
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 4.2e-96 355.9 421 48.5
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 9.3e-96 354.8 426 47.9
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 2.7e-95 353.2 426 47.2
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.0e-94 351.3 426 46.9
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 8.7e-94 348.2 421 47.5
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 1.5e-93 347.4 424 45.8
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 1.5e-93 347.4 396 48.2
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 2.5e-93 346.7 376 48.1
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 3.3e-93 346.3 421 45.1
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 5.6e-93 345.5 424 45.5
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 3.7e-92 342.8 421 46.8
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 4.8e-92 342.4 432 44.2
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 4.8e-92 342.4 464 42.7
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 6.2e-92 342.0 423 45.2
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 6.2e-92 342.0 421 43.2
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 6.2e-92 342.0 421 44.7
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 2.4e-91 340.1 419 44.6
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 3.1e-91 339.7 422 44.5
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 4.0e-91 339.3 419 44.9
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 5.3e-91 339.0 424 44.3
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 6.9e-91 338.6 424 43.9
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 9.0e-91 338.2 418 42.6
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 2.0e-90 337.0 417 47.2
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 6.5e-89 332.0 419 43.2
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.2e-87 327.8 420 45.2
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 1.2e-87 327.8 425 44.2
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 3.5e-87 326.2 420 44.8
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 3.5e-87 326.2 426 44.8
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 2.3e-86 323.6 422 42.7
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 3.0e-86 323.2 430 44.2
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 5.1e-86 322.4 430 44.2
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 5.1e-86 322.4 421 44.7
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 1.9e-85 320.5 391 46.3
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 3.3e-85 319.7 367 46.3
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 5.7e-85 318.9 419 43.7
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 5.7e-85 318.9 419 43.0
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 7.4e-85 318.5 432 43.1
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 2.6e-82 310.1 423 41.4
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 3.8e-81 306.2 425 43.3
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 9.3e-80 301.6 457 38.9
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 1.0e-78 298.1 460 39.3
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 1.8e-78 297.4 420 42.4
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 2.5e-77 293.5 399 42.1
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 1.1e-75 288.1 421 41.1
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 6.9e-75 285.4 430 40.5
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 1.2e-74 284.6 422 41.7
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 1.3e-73 281.2 410 40.7
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 6.5e-73 278.9 414 41.5
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 3.3e-69 266.5 377 41.4
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 2.8e-68 263.5 409 39.6
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 2.7e-63 246.9 426 36.2
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 1.0e-62 245.0 427 36.3
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 2.3e-62 243.8 426 35.7
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 8.8e-62 241.9 371 42.0
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 7.7e-58 228.8 381 38.1
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.2e-53 214.9 366 38.8
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 4.8e-52 209.5 333 40.8
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 1.4e-51 208.0 190 52.6
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 3.8e-49 199.9 210 51.0
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.5e-48 198.0 418 33.5
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 2.0e-45 187.6 208 49.0
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 1.0e-41 175.3 395 32.2
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 1.5e-40 171.4 342 32.5
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 9.8e-37 158.7 431 30.2
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 3.1e-35 153.7 431 29.2
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 1.0e-33 148.7 264 37.5
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.8e-33 146.7 238 41.2
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 4.3e-32 143.3 438 28.1
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 7.3e-32 142.5 491 27.1
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 3.6e-31 140.2 159 49.7
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 6.1e-31 139.4 440 27.7
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 2.0e-29 134.4 237 36.7
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 1.3e-28 131.7 112 50.9
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 8.3e-28 129.0 437 26.3
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 1.0e-25 122.1 440 29.3
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 2.8e-23 114.0 74 74.3
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 5.8e-21 106.3 413 25.7
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.7e-18 97.4 249 33.7
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.3e-17 95.1 244 32.0
FAN16G3589 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.0e-17 93.2 99 53.5
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.9e-16 91.3 238 31.1
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 3.3e-16 90.5 76 53.9
FvH4_3g40670 Fragaria vesca HOM05D005393 ORTHO05D006257 8.9e-14 82.4 54 72.2
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 3.2e-11 73.9 80 46.2
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 7.8e-10 69.3 63 47.6
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-08 64.7 199 30.2
MD15G1008600 Malus domestica HOM05D005393 ORTHO05D006257 5.6e-08 63.2 45 64.4


User provided reference genes

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