Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 3.3e-178 628.2 315 100.0
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 2.3e-171 605.5 315 96.2
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.5e-170 602.1 330 93.0
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 3.8e-158 561.6 315 92.1
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 7.0e-136 487.6 316 75.6
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 1.2e-132 476.9 313 76.0
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 1.4e-128 463.4 315 73.3
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 3.2e-125 452.2 312 72.1
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 5.4e-120 434.9 308 69.2
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 1.2e-119 433.7 312 68.9
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.6e-119 433.3 308 68.5
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 2.7e-119 432.6 310 70.6
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 1.7e-118 429.9 310 69.7
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 1.5e-117 426.8 315 67.0
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 4.2e-117 425.2 307 69.1
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 4.2e-117 425.2 332 65.1
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 7.2e-117 424.5 315 66.7
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 7.2e-117 424.5 313 66.8
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 1.2e-116 423.7 309 67.3
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 1.2e-116 423.7 318 67.3
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 1.6e-116 423.3 307 69.1
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 1.6e-116 423.3 308 68.8
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 2.8e-116 422.5 311 66.2
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 1.8e-115 419.9 305 66.9
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 2.3e-115 419.5 308 67.2
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 2.3e-115 419.5 313 67.4
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 4.0e-115 418.7 310 65.2
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 6.8e-115 417.9 307 67.8
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 2.0e-114 416.4 309 67.0
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 3.4e-114 415.6 307 67.8
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 4.4e-114 415.2 309 66.3
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 2.2e-113 412.9 309 67.3
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 3.7e-113 412.1 316 65.5
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 3.7e-113 412.1 306 64.7
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 1.1e-112 410.6 307 63.5
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 1.1e-112 410.6 307 66.8
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 1.8e-112 409.8 307 66.4
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 5.4e-112 408.3 315 64.4
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 9.2e-112 407.5 311 64.3
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 1.2e-111 407.1 307 67.4
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 4.5e-111 405.2 307 64.8
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 4.5e-111 405.2 302 64.6
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 7.8e-111 404.4 312 63.1
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 1.0e-110 404.1 311 63.3
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 1.3e-110 403.7 312 65.4
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 2.3e-110 402.9 308 65.9
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 5.0e-110 401.7 309 65.0
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 1.1e-109 400.6 309 63.1
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 2.5e-109 399.4 275 74.2
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 5.6e-109 398.3 321 62.0
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 2.1e-108 396.4 360 57.5
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 2.8e-108 396.0 315 62.9
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 2.8e-108 396.0 315 62.9
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 1.4e-107 393.7 309 63.1
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 3.0e-107 392.5 267 70.8
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 2.6e-106 389.4 281 65.1
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 3.4e-106 389.0 309 61.8
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 3.4e-106 389.0 309 65.0
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 4.4e-106 388.7 310 61.9
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 2.2e-105 386.3 316 61.7
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 2.2e-105 386.3 315 59.7
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 2.2e-105 386.3 302 64.9
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 2.9e-105 386.0 327 59.9
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 2.9e-105 386.0 309 62.1
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 3.7e-105 385.6 327 59.6
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 4.9e-105 385.2 302 64.9
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 6.4e-105 384.8 274 66.8
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 1.4e-104 383.6 310 62.6
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 3.2e-104 382.5 306 64.7
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 5.4e-104 381.7 314 61.1
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 5.9e-103 378.3 315 60.3
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 3.0e-102 375.9 297 62.6
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 3.0e-102 375.9 278 64.0
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 1.9e-101 373.2 274 64.6
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 9.5e-101 370.9 323 57.6
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 2.1e-100 369.8 274 65.0
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 4.7e-100 368.6 287 64.8
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 1.1e-99 367.5 307 58.3
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 1.8e-99 366.7 278 63.7
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 3.7e-97 359.0 311 58.5
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 1.4e-96 357.1 309 59.9
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 5.4e-96 355.1 307 58.3
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 6.0e-95 351.7 306 59.8
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 7.8e-95 351.3 315 57.8
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 7.8e-95 351.3 316 56.0
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 1.3e-94 350.5 308 59.4
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 1.3e-94 350.5 308 58.8
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 1.3e-94 350.5 308 59.4
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 1.7e-94 350.1 315 58.1
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 6.6e-94 348.2 315 57.8
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 5.6e-93 345.1 277 62.1
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 2.1e-92 343.2 310 57.1
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 3.6e-92 342.4 315 56.8
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 4.7e-92 342.0 315 57.1
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 4.7e-92 342.0 315 57.1
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 6.2e-92 341.7 315 57.1
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 1.1e-91 340.9 315 56.8
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 1.4e-91 340.5 315 56.5
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 3.1e-91 339.3 315 56.8
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 3.1e-91 339.3 315 56.5
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 1.2e-90 337.4 320 52.5
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 1.5e-90 337.0 315 56.2
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 2.0e-90 336.7 315 56.8
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 2.6e-90 336.3 315 56.8
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 2.9e-89 332.8 240 68.3
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 2.4e-88 329.7 274 59.5
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 2.4e-88 329.7 268 63.1
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 5.4e-88 328.6 249 62.2
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 1.7e-86 323.6 225 72.9
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 6.6e-86 321.6 279 58.1
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 8.6e-86 321.2 283 58.3
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 1.1e-85 320.9 233 68.2
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.4e-83 313.9 277 57.4
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 5.2e-83 312.0 219 69.4
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.3e-81 307.4 191 83.8
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 4.9e-81 305.4 240 65.4
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 2.4e-80 303.1 262 57.6
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 2.8e-76 289.7 267 54.3
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 2.8e-76 289.7 275 52.0
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 1.2e-71 274.2 315 47.9
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 1.3e-70 270.8 291 48.1
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 1.8e-67 260.4 317 44.2
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 3.5e-63 246.1 136 86.0
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 1.2e-55 221.1 198 55.6
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 8.7e-54 214.9 200 63.5
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 4.0e-51 206.1 169 60.4
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 2.9e-49 199.9 113 86.7
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 2.5e-40 170.2 282 39.0
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 3.3e-37 159.8 108 66.7
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 4.7e-23 112.8 112 50.9
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 6.3e-12 75.9 136 36.8
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 1.2e-10 71.6 276 26.8


User provided reference genes

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