Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0929 Fragaria x ananassa HOM05D007708 ORTHO05D009506 4.2e-68 261.2 124 100.0
FAN25G1391 Fragaria x ananassa HOM05D007708 ORTHO05D009506 6.0e-67 257.3 124 98.4
FvH4_3g20710 Fragaria vesca HOM05D007708 ORTHO05D009506 3.0e-66 255.0 124 98.4
FAN11G2360 Fragaria x ananassa HOM05D007708 ORTHO05D009506 3.0e-66 255.0 124 98.4
FAN21G3926 Fragaria x ananassa HOM05D007708 ORTHO05D009506 5.1e-66 254.2 122 97.5
RcHm_v2.0_Chr5g0034861 Rosa chinensis HOM05D007708 ORTHO05D009506 1.7e-61 239.2 124 90.3
Prupe.4G187200 Prunus persica HOM05D007708 ORTHO05D009506 1.3e-37 159.8 124 68.5
MD03G1222500 Malus domestica HOM05D007708 ORTHO05D009506 7.0e-31 137.5 122 60.7
MD11G1239800 Malus domestica HOM05D007708 ORTHO05D009506 2.3e-26 122.5 122 56.6
QL08p019254 Quercus lobata HOM05D007708 ORTHO05D009506 2.9e-21 105.5 123 51.2
CiPaw.11G174300 Carya illinoinensis HOM05D007708 ORTHO05D009506 5.0e-21 104.8 121 46.3
Potri.011G123600 Populus trichocarpa HOM05D007708 ORTHO05D009506 1.5e-20 103.2 117 51.3
Potri.001G404500 Populus trichocarpa HOM05D007708 ORTHO05D009506 4.2e-20 101.7 113 55.8
Haze_09495 Corylus avellana HOM05D007708 ORTHO05D009506 1.2e-19 100.1 102 52.9
Manes.03G114400 Manihot esculenta HOM05D007708 ORTHO05D009506 2.1e-19 99.4 103 53.4
Duzib268G1443 Durio zibethinus HOM05D007708 ORTHO05D009506 3.6e-19 98.6 90 56.7
Ca_01817_v3 Cicer arietinum L. HOM05D007708 ORTHO05D009506 1.0e-18 97.1 85 58.8
Gohir.A01G066900 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.0e-18 97.1 86 58.1
Gohir.D01G054100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.0e-18 97.1 105 51.4
Glyma.12G221200 Glycine max HOM05D007708 ORTHO05D009506 1.4e-18 96.7 79 63.3
Gorai.002G073900 Gossypium raimondii HOM05D007708 ORTHO05D009506 1.4e-18 96.7 104 51.9
Lj3g0000986 Lotus japonicus HOM05D007708 ORTHO05D009506 3.0e-18 95.5 103 53.4
Medtr2g080030 Medicago truncatula HOM05D007708 ORTHO05D009506 5.2e-18 94.7 121 49.6
Phvul.005G084800 Phaseolus vulgaris HOM05D007708 ORTHO05D009506 8.8e-18 94.0 85 58.8
Cfa020536 Carpinus fangiana HOM05D007708 ORTHO05D009506 1.5e-17 93.2 109 49.5
THA.LOC104818058 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 2.0e-17 92.8 111 45.9
VMungo1080G0096 Vigna mungo HOM05D007708 ORTHO05D009506 2.0e-17 92.8 85 58.8
Psat5g246000 Pisum sativum HOM05D007708 ORTHO05D009506 7.5e-17 90.9 79 60.8
Aa31LG8G2750 Aethionema arabicum HOM05D007708 ORTHO05D009506 9.8e-17 90.5 72 61.1
TPR.G38977 Trifolium pratense HOM05D007708 ORTHO05D009506 9.8e-17 90.5 80 60.0
Gohir.A04G028100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.3e-16 90.1 105 46.7
Gohir.D05G360000 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.7e-16 89.7 105 46.7
Gorai.009G432700 Gossypium raimondii HOM05D007708 ORTHO05D009506 1.7e-16 89.7 105 46.7
Thecc.07G075600 Theobroma cacao HOM05D007708 ORTHO05D009506 3.7e-16 88.6 101 48.5
Ciclev10009880m.g Citrus clementina HOM05D007708 ORTHO05D009506 4.8e-16 88.2 114 48.2
THA.LOC104810490 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 6.3e-16 87.8 79 55.7
Thhalv10012270m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 1.1e-15 87.0 102 47.1
Carub.0003s1524 Capsella rubella HOM05D007708 ORTHO05D009506 1.4e-15 86.7 106 44.3
Glyma.13G280400 Glycine max HOM05D007708 ORTHO05D009506 1.4e-15 86.7 78 59.0
Aa31LG10G2210 Aethionema arabicum HOM05D007708 ORTHO05D009506 3.1e-15 85.5 102 49.0
CARHR090570 Cardamine hirsuta HOM05D007708 ORTHO05D009506 4.1e-15 85.1 100 48.0
Lalb_Chr07g0181711 Lupinus albus HOM05D007708 ORTHO05D009506 4.1e-15 85.1 75 60.0
BcaB07g33383 Brassica carinata HOM05D007708 ORTHO05D009506 7.0e-15 84.3 101 47.5
AT3G15518 Arabidopsis thaliana HOM05D007708 ORTHO05D009506 9.1e-15 84.0 103 43.7
TWI38G1724 Tripterygium wilfordii HOM05D007708 ORTHO05D009506 9.1e-15 84.0 90 55.6
BcaC08g43472 Brassica carinata HOM05D007708 ORTHO05D009506 1.6e-14 83.2 102 47.1
C06p08550 Brassica napus HOM05D007708 ORTHO05D009506 1.6e-14 83.2 102 47.1
BolC6t35934H Brassica oleracea HOM05D007708 ORTHO05D009506 1.6e-14 83.2 102 47.1
Eucgr.F03340 Eucalyptus grandis HOM05D007708 ORTHO05D009506 1.6e-14 83.2 75 57.3
BcaC05g28966 Brassica carinata HOM05D007708 ORTHO05D009506 2.7e-14 82.4 100 47.0
C05p51610 Brassica napus HOM05D007708 ORTHO05D009506 2.7e-14 82.4 100 47.0
BolC5t33849H Brassica oleracea HOM05D007708 ORTHO05D009506 2.7e-14 82.4 100 47.0
A05p33900 Brassica napus HOM05D007708 ORTHO05D009506 3.5e-14 82.0 100 47.0
BraA05t22212Z Brassica rapa HOM05D007708 ORTHO05D009506 3.5e-14 82.0 100 47.0
Sp1g39450 Schrenkiella parvula HOM05D000067 ORTHO05D000097 3.5e-14 82.0 108 45.4
AL3G28090 Arabidopsis lyrata HOM05D007708 ORTHO05D009506 4.5e-14 81.6 103 42.7
BcaB06g29586 Brassica carinata HOM05D007708 ORTHO05D009506 4.5e-14 81.6 100 47.0
A06p01470 Brassica napus HOM05D007708 ORTHO05D009506 4.5e-14 81.6 87 54.0
BraA06t23368Z Brassica rapa HOM05D007708 ORTHO05D009506 4.5e-14 81.6 87 54.0
Thhalv10021811m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 2.2e-13 79.3 100 44.0
Atru.chr2.2769 Acer truncatum HOM05D007708 ORTHO05D009506 6.5e-13 77.8 72 55.6
Sp3g13770 Schrenkiella parvula HOM05D007708 ORTHO05D009506 1.9e-12 76.3 88 50.0
BcaC09g48516 Brassica carinata HOM05D007708 ORTHO05D009506 1.2e-11 73.6 98 42.9
BcaC09g48517 Brassica carinata HOM05D007708 ORTHO05D009506 1.2e-11 73.6 98 42.9
BolC1t04856H Brassica oleracea HOM05D007708 ORTHO05D009506 1.2e-11 73.6 98 42.9
BcaB04g20921 Brassica carinata HOM05D007708 ORTHO05D009506 2.1e-11 72.8 88 47.7
ClCG11G018300 Citrullus lanatus HOM05D007708 ORTHO05D009506 1.8e-10 69.7 72 55.6
Nn1g06676 Nelumbo nucifera HOM05D007708 ORTHO05D009506 5.2e-10 68.2 79 51.9
Aqoxy1G02627 Aquilegia oxysepala HOM05D007708 ORTHO05D009506 8.8e-10 67.4 121 40.5
TAR626G1828 Trochodendron aralioides HOM05D007708 ORTHO05D009506 8.8e-10 67.4 101 45.5
CSS0032536 Camellia sinensis var. sinensis HOM05D007708 ORTHO05D009506 1.5e-09 66.6 121 42.1
MBI02_g19253_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 2.6e-09 65.9 78 50.0
Glyma.06G249202 Glycine max HOM05D007708 ORTHO05D009506 4.4e-09 65.1 84 46.4
COL.COLO4_09450 Corchorus olitorius HOM05D007708 ORTHO05D009506 2.2e-08 62.8 87 49.4
MELO3C018234.2 Cucumis melo HOM05D007708 ORTHO05D009506 2.2e-08 62.8 72 51.4
CsaV3_3G044520 Cucumis sativus L. HOM05D007708 ORTHO05D009506 4.9e-08 61.6 72 50.0
BcaC09g48515 Brassica carinata HOM05D007708 ORTHO05D009506 1.1e-07 60.5 105 34.3
PGR031G0494 Punica granatum HOM05D007708 ORTHO05D009506 2.4e-07 59.3 109 40.4
Sc16g0006840 Simmondsia chinensis HOM05D007708 ORTHO05D009506 1.2e-06 57.0 115 36.5
Rhsim06G0195000 Rhododendron simsii HOM05D007708 ORTHO05D009506 2.0e-06 56.2 51 58.8


User provided reference genes

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