Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.8e-288 995.3 551 100.0
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.1e-248 861.7 552 89.7
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.2e-245 851.7 552 88.6
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 7.2e-237 823.9 552 86.4
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.5e-215 751.9 502 87.5
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 6.5e-206 721.1 554 78.5
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 8.1e-180 634.4 518 70.5
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 6.4e-153 545.0 566 63.8
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 1.9e-144 516.9 564 61.2
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.7e-134 481.9 337 81.0
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 6.9e-131 471.9 570 58.4
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 4.5e-130 469.2 567 53.6
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 5.0e-129 465.7 567 53.4
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 1.9e-125 453.8 567 52.6
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 2.5e-125 453.4 562 53.0
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 3.7e-124 449.5 567 52.9
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 4.1e-123 446.0 554 51.1
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 1.6e-119 434.1 565 50.4
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 1.4e-118 431.0 539 51.6
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.4e-118 431.0 546 52.4
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 6.7e-118 428.7 560 50.4
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 1.1e-117 427.9 552 50.2
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 3.3e-117 426.4 564 51.4
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 9.1e-115 418.3 545 50.8
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 7.7e-114 415.2 548 50.2
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 2.5e-112 410.2 553 49.5
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 2.0e-109 400.6 561 48.5
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 2.6e-109 400.2 551 49.2
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 5.7e-109 399.1 553 49.5
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 7.4e-109 398.7 562 48.8
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 1.3e-108 397.9 556 49.3
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 1.7e-108 397.5 564 50.5
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 4.1e-107 392.9 555 48.3
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 9.1e-107 391.7 531 49.2
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 5.0e-105 386.0 445 55.3
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 2.5e-104 383.6 546 49.1
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 7.2e-104 382.1 560 47.9
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 2.0e-101 374.0 552 47.1
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 1.2e-98 364.8 546 46.0
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 8.5e-97 358.6 548 44.3
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 2.1e-95 354.0 561 44.7
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 2.6e-93 347.1 544 45.0
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 2.8e-92 343.6 493 48.3
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 2.8e-92 343.6 493 48.3
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 4.8e-92 342.8 542 49.4
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 1.8e-91 340.9 554 45.3
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.5e-90 336.7 421 52.3
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 5.9e-90 335.9 601 41.1
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 3.8e-89 333.2 584 45.0
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 7.2e-88 328.9 466 50.9
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.6e-87 327.8 546 42.5
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.6e-87 327.8 551 43.2
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 3.6e-87 326.6 499 46.7
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 8.9e-86 322.0 530 47.0
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 3.4e-85 320.1 479 47.2
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 1.8e-83 314.3 551 42.6
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.2e-82 311.6 549 41.7
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 2.0e-82 310.8 552 42.6
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 8.6e-81 305.4 542 40.8
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 1.1e-80 305.1 572 42.1
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 9.5e-80 302.0 552 41.7
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 1.4e-78 298.1 554 39.9
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 3.0e-78 297.0 538 42.4
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 7.0e-75 285.8 479 43.8
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 2.0e-74 284.3 539 39.3
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 3.5e-74 283.5 394 47.7
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 4.6e-74 283.1 563 42.6
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 1.3e-73 281.6 544 40.6
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 5.0e-73 279.6 539 40.1
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 3.3e-72 276.9 621 36.7
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 4.3e-72 276.6 592 39.9
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 5.6e-72 276.2 553 37.8
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.6e-71 274.6 464 43.5
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 2.8e-71 273.9 616 36.4
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 1.1e-70 271.9 588 40.1
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 1.4e-70 271.6 595 37.6
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 4.0e-70 270.0 539 39.3
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 4.9e-68 263.1 517 39.7
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 5.4e-67 259.6 442 44.8
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 7.8e-66 255.8 554 38.3
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 3.3e-64 250.4 622 35.4
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 3.3e-64 250.4 560 37.5
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 1.6e-63 248.1 603 40.8
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 2.1e-63 247.7 518 41.9
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 3.6e-63 246.9 618 35.6
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 1.2e-61 241.9 553 40.1
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 1.2e-61 241.9 611 36.3
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 2.0e-61 241.1 471 39.5
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.7e-60 238.0 493 39.4
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 3.2e-59 233.8 527 36.2
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 6.0e-58 229.6 420 41.2
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 7.8e-58 229.2 472 38.8
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 1.6e-55 221.5 558 36.0
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 2.1e-55 221.1 550 36.0
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 4.7e-55 219.9 555 37.5
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 1.1e-54 218.8 591 35.4
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 1.2e-53 215.3 555 36.2
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 5.4e-51 206.5 644 36.2
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 7.8e-50 202.6 623 36.4
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 1.0e-49 202.2 551 34.5
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 1.3e-49 201.8 535 36.1
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 3.9e-49 200.3 549 34.6
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 5.1e-49 199.9 548 36.7
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 4.3e-48 196.8 495 33.1
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 7.3e-48 196.1 570 32.3
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 4.0e-46 190.3 558 30.3
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 3.4e-45 187.2 525 33.3
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 7.6e-45 186.0 545 38.0
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 2.9e-44 184.1 534 34.6
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 3.8e-44 183.7 544 33.8
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 1.4e-43 181.8 533 34.9
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 3.2e-43 180.6 384 38.0
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 7.1e-43 179.5 534 34.5
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 6.6e-41 172.9 548 31.2
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 4.0e-38 163.7 522 33.7
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 9.9e-37 159.1 531 34.5
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 2.2e-36 157.9 520 33.5
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 2.9e-36 157.5 519 31.6
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 2.9e-36 157.5 522 33.3
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 1.4e-35 155.2 535 32.0
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 3.5e-34 150.6 535 32.9
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 4.6e-34 150.2 260 41.5
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 1.9e-32 144.8 312 38.1
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 7.4e-32 142.9 371 35.8
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 3.1e-30 137.5 574 27.7
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 4.5e-29 133.7 443 30.2
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 4.9e-28 130.2 249 39.4
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 4.9e-28 130.2 185 47.0
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.9e-27 128.3 330 36.4
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.4e-27 127.9 243 37.4
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 1.6e-26 125.2 172 47.7
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 6.7e-25 119.8 577 27.0
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 4.3e-24 117.1 112 65.2
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 6.9e-22 109.8 195 36.4
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 5.1e-17 93.6 128 43.0
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 5.1e-17 93.6 213 32.4
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 1.1e-16 92.4 412 26.7
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 2.8e-15 87.8 243 32.5
QL10p038631 Quercus lobata HOM05D001846 ORTHO05D005785 5.0e-12 77.0 87 52.9
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 5.5e-11 73.6 312 31.7
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 3.9e-09 67.4 193 30.6
Mapoly0001s0089 Marchantia polymorpha HOM05D001846 ORTHO05D005785 6.9e-06 56.6 91 34.1


User provided reference genes

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