Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 5.3e-56 221.1 137 100.0
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.4e-53 213.0 137 87.6
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 5.7e-50 201.1 137 93.4
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.8e-49 198.7 137 92.7
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.5e-47 193.0 141 90.1
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 4.2e-45 184.9 140 75.0
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 3.3e-26 122.1 139 55.4
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 1.7e-25 119.8 137 51.1
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 3.1e-24 115.5 138 54.3
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 7.0e-24 114.4 142 52.1
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 2.0e-23 112.8 137 48.2
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 3.5e-23 112.1 137 51.1
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 4.5e-23 111.7 137 50.4
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 4.5e-23 111.7 137 50.4
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 1.3e-22 110.2 136 49.3
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 2.2e-22 109.4 137 50.4
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 6.5e-22 107.8 141 51.8
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 1.1e-21 107.1 138 48.6
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 7.2e-21 104.4 137 48.2
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 1.6e-20 103.2 135 45.9
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 4.7e-20 101.7 83 65.1
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 4.7e-20 101.7 75 66.7
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 6.1e-20 101.3 73 67.1
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 2.3e-19 99.4 90 54.4
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.0e-19 99.0 137 46.0
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.0e-19 99.0 137 46.0
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 4.0e-19 98.6 98 58.2
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 4.0e-19 98.6 78 61.5
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 4.0e-19 98.6 73 63.0
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 4.0e-19 98.6 82 62.2
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 6.8e-19 97.8 146 43.2
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 8.8e-19 97.4 137 45.3
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.2e-18 97.1 70 67.1
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 1.2e-18 97.1 70 67.1
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.5e-18 96.7 66 68.2
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 2.6e-18 95.9 137 47.4
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 4.4e-18 95.1 75 61.3
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 4.4e-18 95.1 145 41.4
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 4.4e-18 95.1 132 45.5
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 5.7e-18 94.7 59 76.3
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.7e-17 93.2 79 64.6
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 2.2e-17 92.8 70 62.9
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 2.8e-17 92.4 62 69.4
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 2.8e-17 92.4 80 58.8
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 3.7e-17 92.0 52 78.8
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 4.8e-17 91.7 67 68.7
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 4.8e-17 91.7 60 71.7
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 1.1e-16 90.5 76 61.8
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.1e-16 90.5 83 60.2
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.1e-16 90.5 66 68.2
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 1.4e-16 90.1 134 42.5
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 1.8e-16 89.7 52 76.9
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.8e-16 89.7 139 46.8
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.8e-16 89.7 139 46.8
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 1.8e-16 89.7 59 71.2
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 2.4e-16 89.4 84 53.6
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.4e-16 89.4 58 67.2
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 3.1e-16 89.0 83 60.2
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 9.1e-16 87.4 80 55.0
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 2.0e-15 86.3 69 60.9
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 2.7e-15 85.9 76 59.2
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 3.5e-15 85.5 69 56.5
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.5e-15 85.5 144 44.4
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 3.5e-15 85.5 60 70.0
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 4.5e-15 85.1 138 46.4
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 5.9e-15 84.7 84 57.1
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 5.9e-15 84.7 79 53.2
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 1.0e-14 84.0 63 60.3
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.0e-14 84.0 54 64.8
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 1.3e-14 83.6 137 36.5
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 1.3e-14 83.6 52 67.3
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 1.7e-14 83.2 59 62.7
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.9e-14 82.4 83 53.0
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 2.9e-14 82.4 61 70.5
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 3.8e-14 82.0 134 40.3
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 5.0e-14 81.6 59 64.4
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 5.0e-14 81.6 82 52.4
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 6.5e-14 81.3 61 62.3
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 8.5e-14 80.9 65 56.9
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 8.5e-14 80.9 73 53.4
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 1.1e-13 80.5 55 65.5
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 1.1e-13 80.5 63 60.3
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.5e-13 80.1 56 62.5
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 1.5e-13 80.1 136 42.6
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.9e-13 79.7 67 56.7
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 4.2e-13 78.6 65 60.0
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 4.2e-13 78.6 81 49.4
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 5.5e-13 78.2 53 64.2
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 5.5e-13 78.2 65 58.5
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 7.2e-13 77.8 142 38.0
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 7.2e-13 77.8 63 54.0
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 9.4e-13 77.4 67 59.7
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 1.2e-12 77.0 65 58.5
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 1.2e-12 77.0 52 67.3
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 1.2e-12 77.0 65 58.5
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 1.2e-12 77.0 52 63.5
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 1.2e-12 77.0 52 67.3
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 1.2e-12 77.0 65 58.5
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 1.2e-12 77.0 49 69.4
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 1.2e-12 77.0 65 58.5
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 1.2e-12 77.0 55 61.8
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.2e-12 77.0 71 54.9
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 1.6e-12 76.6 53 60.4
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.6e-12 76.6 59 59.3
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 1.6e-12 76.6 55 60.0
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 2.1e-12 76.3 67 58.2
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 2.1e-12 76.3 76 51.3
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 2.7e-12 75.9 75 46.7
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 2.7e-12 75.9 137 39.4
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 2.7e-12 75.9 52 65.4
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 2.7e-12 75.9 65 58.5
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 2.7e-12 75.9 52 61.5
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 2.7e-12 75.9 51 64.7
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 2.7e-12 75.9 50 64.0
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 2.7e-12 75.9 68 55.9
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.7e-12 75.9 57 54.4
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 3.6e-12 75.5 77 51.9
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 3.6e-12 75.5 137 38.7
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 3.6e-12 75.5 84 50.0
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 3.6e-12 75.5 84 50.0
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 3.6e-12 75.5 62 58.1
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 3.6e-12 75.5 68 51.5
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 6.1e-12 74.7 52 63.5
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 6.1e-12 74.7 76 53.9
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 8.0e-12 74.3 51 62.7
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 8.0e-12 74.3 74 50.0
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 1.0e-11 73.9 59 59.3
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 1.0e-11 73.9 60 60.0
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 1.0e-11 73.9 72 52.8
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 1.4e-11 73.6 52 61.5
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.8e-11 73.2 71 53.5
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 2.3e-11 72.8 86 48.8
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 3.0e-11 72.4 115 39.1
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 5.2e-11 71.6 56 58.9
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 6.8e-11 71.2 50 62.0
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 6.8e-11 71.2 50 62.0
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 6.8e-11 71.2 62 58.1
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 1.2e-10 70.5 76 42.1
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 1.2e-10 70.5 58 58.6
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.2e-10 70.5 57 57.9
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 1.5e-10 70.1 76 46.1
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 2.0e-10 69.7 54 53.7
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 3.4e-10 68.9 65 50.8
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 4.4e-10 68.6 57 54.4
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 4.4e-10 68.6 53 56.6
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 4.4e-10 68.6 53 56.6
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 4.4e-10 68.6 75 50.7
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 5.7e-10 68.2 54 55.6
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 5.7e-10 68.2 54 55.6
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 7.5e-10 67.8 56 53.6
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 7.5e-10 67.8 78 43.6
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 7.5e-10 67.8 78 43.6
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 7.5e-10 67.8 78 43.6
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 9.8e-10 67.4 54 55.6
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 9.8e-10 67.4 54 55.6
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 9.8e-10 67.4 54 55.6
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 2.2e-09 66.2 48 58.3
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 2.2e-09 66.2 83 50.6
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 2.8e-09 65.9 55 56.4
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 3.7e-09 65.5 76 44.7
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 3.7e-09 65.5 76 44.7
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 3.7e-09 65.5 61 62.3
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.1e-08 63.9 57 56.1
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 1.4e-08 63.5 51 54.9
Lalb_Chr17g0349061 Lupinus albus HOM05D003595 ORTHO05D004132 1.4e-08 63.5 123 38.2
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 3.1e-08 62.4 76 46.1
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 5.4e-08 61.6 63 50.8
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 5.4e-08 61.6 61 52.5
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 7.0e-08 61.2 50 58.0
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 9.1e-08 60.8 50 56.0
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 9.1e-08 60.8 57 47.4
Gohir.A11G311600 Gossypium hirsutum HOM05D003595 ORTHO05D004132 9.1e-08 60.8 76 42.1
Gohir.D11G328300 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.2e-07 60.5 76 42.1
Gorai.007G359500 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.2e-07 60.5 76 42.1
Atru.chr1.1053 Acer truncatum HOM05D003595 ORTHO05D004132 2.0e-07 59.7 67 44.8
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 2.7e-07 59.3 66 47.0
GSVIVG01033314001 Vitis vinifera HOM05D003595 ORTHO05D004132 3.5e-07 58.9 40 62.5
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 4.5e-07 58.5 49 51.0
Aa31LG10G3530 Aethionema arabicum HOM05D003595 ORTHO05D004132 1.7e-06 56.6 42 59.5
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 1.7e-06 56.6 52 48.1
MSTRG.3147 Avicennia marina HOM05D002383 ORTHO05D002515 1.7e-06 56.6 55 50.9
SGA_v2.0_scaffold18G08279 Striga asiatica HOM05D002383 ORTHO05D002515 2.9e-06 55.8 54 53.7
Aa31LG2G9800 Aethionema arabicum HOM05D002383 ORTHO05D002515 5.0e-06 55.1 69 43.5
Rhsim08G0050700 Rhododendron simsii HOM05D002383 ORTHO05D002515 6.6e-06 54.7 51 54.9
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 6.6e-06 54.7 53 50.9


User provided reference genes

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