Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 7.5e-65 250.4 127 100.0
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 7.5e-65 250.4 127 100.0
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 3.7e-64 248.1 127 98.4
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 3.7e-64 248.1 127 98.4
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.3e-61 239.6 126 96.8
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 1.3e-61 239.6 127 94.5
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 1.0e-53 213.4 128 83.6
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 4.3e-52 208.0 128 81.2
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 6.2e-51 204.1 118 83.1
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 4.0e-50 201.4 128 79.7
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 7.6e-49 197.2 127 78.0
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 9.9e-49 196.8 126 76.2
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 1.7e-48 196.1 127 76.4
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 2.2e-48 195.7 128 77.3
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 2.2e-48 195.7 127 76.4
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 2.2e-48 195.7 124 75.0
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 3.2e-47 191.8 127 75.6
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 5.4e-47 191.0 128 75.0
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 7.1e-47 190.7 127 74.0
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 9.3e-47 190.3 127 73.2
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 1.2e-46 189.9 127 73.2
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 1.2e-46 189.9 128 76.6
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 1.2e-46 189.9 128 75.8
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 1.6e-46 189.5 124 73.4
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 1.6e-46 189.5 130 73.8
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 1.6e-46 189.5 128 76.6
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 2.7e-46 188.7 130 73.8
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 2.7e-46 188.7 128 72.7
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 4.6e-46 188.0 122 75.4
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 4.6e-46 188.0 118 75.4
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 6.0e-46 187.6 127 72.4
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 1.0e-45 186.8 127 72.4
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 1.7e-45 186.0 122 73.0
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 1.7e-45 186.0 122 74.6
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 1.7e-45 186.0 121 73.6
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 3.0e-45 185.3 128 73.4
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 5.1e-45 184.5 118 74.6
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 1.1e-44 183.3 107 81.3
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 1.1e-44 183.3 127 73.2
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 1.1e-44 183.3 121 71.9
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 1.5e-44 183.0 124 72.6
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 1.5e-44 183.0 114 76.3
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 1.5e-44 183.0 114 76.3
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 1.9e-44 182.6 128 73.4
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 2.5e-44 182.2 127 68.5
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 2.5e-44 182.2 133 70.7
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 3.3e-44 181.8 128 73.4
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 4.3e-44 181.4 118 72.0
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 4.3e-44 181.4 123 73.2
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 4.3e-44 181.4 128 72.7
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 4.3e-44 181.4 128 72.7
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 4.3e-44 181.4 127 70.1
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 5.6e-44 181.0 128 72.7
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 5.6e-44 181.0 127 70.9
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 7.3e-44 180.6 110 78.2
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 9.6e-44 180.3 149 63.8
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 9.6e-44 180.3 127 70.9
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 1.3e-43 179.9 121 72.7
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 1.3e-43 179.9 128 68.8
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 1.3e-43 179.9 121 71.1
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 1.6e-43 179.5 120 71.7
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 2.1e-43 179.1 117 71.8
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 2.1e-43 179.1 113 74.3
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 3.6e-43 178.3 118 73.7
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 3.6e-43 178.3 117 70.9
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 3.6e-43 178.3 117 69.2
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 3.6e-43 178.3 127 69.3
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 3.6e-43 178.3 127 69.3
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 4.8e-43 177.9 118 73.7
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 4.8e-43 177.9 118 73.7
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 4.8e-43 177.9 118 73.7
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 8.1e-43 177.2 118 72.0
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 8.1e-43 177.2 118 72.9
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 8.1e-43 177.2 127 70.1
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 1.1e-42 176.8 118 73.7
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 1.1e-42 176.8 117 70.1
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.4e-42 176.4 141 64.5
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 1.4e-42 176.4 114 76.3
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 1.8e-42 176.0 118 71.2
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 1.8e-42 176.0 120 71.7
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 1.8e-42 176.0 117 70.1
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.8e-42 176.0 125 71.2
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 1.8e-42 176.0 111 71.2
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 2.4e-42 175.6 118 71.2
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 2.4e-42 175.6 127 70.9
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 3.1e-42 175.3 114 71.1
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 3.1e-42 175.3 125 71.2
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 4.0e-42 174.9 118 72.0
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 4.0e-42 174.9 118 72.0
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 4.0e-42 174.9 118 72.0
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 5.3e-42 174.5 143 63.6
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 6.9e-42 174.1 113 72.6
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 6.9e-42 174.1 128 70.3
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 9.0e-42 173.7 111 72.1
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 1.2e-41 173.3 125 68.0
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 1.5e-41 172.9 122 68.9
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 2.0e-41 172.6 122 68.9
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 2.6e-41 172.2 120 68.3
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 2.6e-41 172.2 115 69.6
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 2.6e-41 172.2 115 71.3
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 3.4e-41 171.8 127 68.5
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 4.5e-41 171.4 125 67.2
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 1.7e-40 169.5 111 68.5
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 1.1e-39 166.8 125 68.0
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 3.2e-39 165.2 147 59.9
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 7.9e-38 160.6 121 64.5
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 1.1e-26 123.6 88 68.2
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 1.3e-24 116.7 106 52.8
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 4.2e-23 111.7 81 67.9
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 9.3e-23 110.5 106 48.1
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 1.2e-22 110.2 68 77.9
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 3.0e-21 105.5 106 47.2
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 4.3e-20 101.7 62 75.8
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 9.7e-20 100.5 67 73.1
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 6.3e-19 97.8 58 72.4
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 1.1e-18 97.1 69 62.3
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 1.4e-18 96.7 68 64.7
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 1.4e-18 96.7 73 61.6
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 1.8e-18 96.3 68 63.2
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 1.8e-18 96.3 77 61.0
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 2.4e-18 95.9 68 67.6
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 3.1e-18 95.5 67 64.2
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 3.1e-18 95.5 73 63.0
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 5.3e-18 94.7 59 76.3
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 9.0e-18 94.0 59 76.3
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 1.5e-17 93.2 81 59.3
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 2.6e-17 92.4 63 73.0
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 2.2e-16 89.4 110 45.5
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 1.1e-15 87.0 71 57.7
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 1.9e-15 86.3 60 71.7
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 4.2e-15 85.1 108 38.9
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 6.1e-14 81.3 57 70.2
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 6.1e-14 81.3 58 65.5
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 3.0e-13 79.0 57 66.7
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.3e-11 73.6 57 63.2
SMO367G0923 Selaginella moellendorffii HOM05D005454 ORTHO05D006781 6.3e-11 71.2 101 36.6
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 1.8e-10 69.7 47 70.2
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 1.8e-10 69.7 51 66.7
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 1.8e-10 69.7 51 66.7
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 3.1e-10 68.9 51 66.7
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 6.5e-08 61.2 38 68.4


User provided reference genes

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