Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0802 Fragaria x ananassa HOM05D007392 ORTHO05D009181 1.2e-74 283.1 146 100.0
FvH4_3g45780 Fragaria vesca HOM05D007392 ORTHO05D009181 1.4e-67 259.6 143 95.1
FAN11G3804 Fragaria x ananassa HOM05D007392 ORTHO05D009181 1.3e-65 253.1 143 94.4
FAN25G2102 Fragaria x ananassa HOM05D007392 ORTHO05D009181 2.6e-61 238.8 200 68.5
RcHm_v2.0_Chr5g0083851 Rosa chinensis HOM05D007392 ORTHO05D009181 2.4e-59 232.3 143 85.3
MD03G1003200 Malus domestica HOM05D007392 ORTHO05D009181 1.5e-37 159.8 151 58.3
Cfa009557 Carpinus fangiana HOM05D007392 ORTHO05D009181 1.7e-36 156.4 143 59.4
GSVIVG01025476001 Vitis vinifera HOM05D007392 ORTHO05D009181 1.4e-35 153.3 143 56.6
CiPaw.13G177600 Carya illinoinensis HOM05D007392 ORTHO05D009181 1.2e-34 150.2 143 53.8
Dinv13477 Davidia involucrata HOM05D007392 ORTHO05D009181 5.1e-33 144.8 147 55.8
Prupe.6G002800 Prunus persica HOM05D007392 ORTHO05D009181 9.7e-32 140.6 122 63.1
MD11G1003000 Malus domestica HOM05D007392 ORTHO05D009181 2.4e-30 136.0 149 55.0
QL01p003594 Quercus lobata HOM05D007392 ORTHO05D009181 9.1e-30 134.0 169 43.8
TWI34G1824 Tripterygium wilfordii HOM05D007392 ORTHO05D009181 2.2e-28 129.4 143 49.0
Potri.003G221800 Populus trichocarpa HOM05D007392 ORTHO05D009181 3.8e-28 128.6 145 49.7
Potri.001G003300 Populus trichocarpa HOM05D007392 ORTHO05D009181 5.0e-28 128.3 147 47.6
TAR623G1707 Trochodendron aralioides HOM05D007392 ORTHO05D009181 1.9e-27 126.3 141 52.5
Manes.15G109800 Manihot esculenta HOM05D007392 ORTHO05D009181 5.5e-27 124.8 151 48.3
Cc01_g00150 Coffea canephora HOM05D007392 ORTHO05D009181 1.2e-26 123.6 151 50.3
Ciclev10017000m.g Citrus clementina HOM05D007392 ORTHO05D009181 1.4e-25 120.2 159 44.7
Actinidia00905 Actinidia chinensis HOM05D007392 ORTHO05D009181 1.1e-24 117.1 147 49.7
CANSAT11G0973 Cannabis sativa HOM05D007392 ORTHO05D009181 1.1e-24 117.1 145 50.3
Sc09g0000040 Simmondsia chinensis HOM05D007392 ORTHO05D009181 2.0e-24 116.3 162 42.6
Nn2g15869 Nelumbo nucifera HOM05D007392 ORTHO05D009181 3.3e-24 115.5 144 47.9
Aqoxy2G00525 Aquilegia oxysepala HOM05D007392 ORTHO05D009181 4.4e-24 115.2 141 48.2
Actinidia16241 Actinidia chinensis HOM05D007392 ORTHO05D009181 1.7e-23 113.2 139 49.6
PSO339G3225 Papaver somniferum HOM05D007392 ORTHO05D009181 1.7e-23 113.2 142 44.4
CAN.G1834.12 Capsicum annuum HOM05D007392 ORTHO05D009181 6.3e-23 111.3 145 47.6
PSO384G3152 Papaver somniferum HOM05D007392 ORTHO05D009181 6.3e-23 111.3 146 43.2
Lsat_1_v5_gn_6_55560 Lactuca sativa HOM05D007392 ORTHO05D009181 8.2e-23 110.9 147 43.5
Sopen01g001550 Solanum pennellii HOM05D007392 ORTHO05D009181 1.4e-22 110.2 145 46.9
Solyc01g005530.3 Solanum lycopersicum HOM05D007392 ORTHO05D009181 4.1e-22 108.6 145 46.2
ClCG03G014560 Citrullus lanatus HOM05D007392 ORTHO05D009181 9.1e-22 107.5 143 46.2
PGSC0003DMG402032165 Solanum tuberosum HOM05D007392 ORTHO05D009181 1.2e-21 107.1 145 48.3
MELO3C015574.2 Cucumis melo HOM05D007392 ORTHO05D009181 1.5e-21 106.7 147 45.6
CsaV3_1G041630 Cucumis sativus L. HOM05D007392 ORTHO05D009181 3.4e-21 105.5 147 44.9
Rhsim13G0233100 Rhododendron simsii HOM05D007392 ORTHO05D009181 3.4e-21 105.5 127 47.2
FAN13G1029 Fragaria x ananassa HOM05D007132 ORTHO05D009181 2.2e-20 102.8 75 70.7
Peaxi162Scf00705g00062 Petunia axillaris HOM05D007392 ORTHO05D009181 2.9e-20 102.4 125 50.4
AT3G13480 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 1.1e-19 100.5 168 46.4
Carub.0003s1294 Capsella rubella HOM05D007392 ORTHO05D009181 2.5e-19 99.4 162 40.7
THA.LOC104810320 Tarenaya hassleriana HOM05D007392 ORTHO05D009181 2.5e-19 99.4 152 42.1
Eucgr.J01763 Eucalyptus grandis HOM05D007392 ORTHO05D009181 3.2e-19 99.0 143 42.0
Sp3g11690 Schrenkiella parvula HOM05D007392 ORTHO05D009181 3.2e-19 99.0 171 40.4
ECA233G2404 Erigeron canadensis HOM05D007392 ORTHO05D009181 4.2e-19 98.6 151 41.1
Thhalv10021633m.g Eutrema salsugineum HOM05D007392 ORTHO05D009181 7.2e-19 97.8 170 41.2
Sabra03G0165000 Salix brachista HOM05D007392 ORTHO05D009181 7.2e-19 97.8 123 48.0
A01p40100 Brassica napus HOM05D007392 ORTHO05D009181 1.2e-18 97.1 160 46.2
BraA01t04052Z Brassica rapa HOM05D007392 ORTHO05D009181 1.2e-18 97.1 160 46.2
FAN05G3304 Fragaria x ananassa HOM05D067380 ORTHO05D009181 1.2e-18 97.1 61 83.6
A05p36050 Brassica napus HOM05D007392 ORTHO05D009181 1.6e-18 96.7 166 44.0
SalBow3G3897 Salvia bowleyana HOM05D007392 ORTHO05D009181 1.6e-18 96.7 147 43.5
C01p51590 Brassica napus HOM05D007392 ORTHO05D009181 2.7e-18 95.9 167 40.7
FAN05G0870 Fragaria x ananassa HOM05D067380 ORTHO05D009181 4.7e-18 95.1 61 82.0
Sed0020032 Sechium edule HOM05D007392 ORTHO05D009181 4.7e-18 95.1 145 40.7
BcaC05g29176 Brassica carinata HOM05D007392 ORTHO05D009181 8.0e-18 94.4 169 42.6
BolC1t05102H Brassica oleracea HOM05D007392 ORTHO05D009181 8.0e-18 94.4 167 40.7
SGA_v2.0_scaffold6G03356 Striga asiatica HOM05D007392 ORTHO05D009181 1.8e-17 93.2 151 41.1
Nitab4.5_0006195g0060 Nicotiana tabacum HOM05D007392 ORTHO05D009181 3.0e-17 92.4 126 48.4
BcaB04g18766 Brassica carinata HOM05D007392 ORTHO05D009181 6.7e-17 91.3 155 37.4
PGR119G0135 Punica granatum HOM05D007392 ORTHO05D009181 6.7e-17 91.3 149 41.6
AL3G25390 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 1.5e-16 90.1 164 42.7
Oeu004754.1 Olea europaea HOM05D007392 ORTHO05D009181 2.0e-16 89.7 136 46.3
Nitab4.5_0000551g0100 Nicotiana tabacum HOM05D007392 ORTHO05D009181 4.4e-16 88.6 122 48.4
BraA03t12977Z Brassica rapa HOM05D007392 ORTHO05D009181 7.4e-16 87.8 169 41.4
CARHR088140 Cardamine hirsuta HOM05D007392 ORTHO05D009181 1.3e-15 87.0 161 41.6
Nn7g35849 Nelumbo nucifera HOM05D007392 ORTHO05D009181 8.2e-15 84.3 121 42.1
Sabra01G0002400 Salix brachista HOM05D007392 ORTHO05D009181 1.8e-14 83.2 140 42.9
vmacro04261 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 4.1e-14 82.0 108 46.3
DCAR_032194 Daucus carota HOM05D007392 ORTHO05D009181 7.0e-14 81.3 126 37.3
EL10Ac4g10390 Beta vulgaris HOM05D007392 ORTHO05D009181 1.2e-13 80.5 131 38.9
BcaC01g03991 Brassica carinata HOM05D007392 ORTHO05D009181 2.0e-13 79.7 150 38.7
Migut.D02593 Erythranthe guttata HOM05D007392 ORTHO05D009181 2.9e-12 75.9 146 38.4
MSTRG.20935 Avicennia marina HOM05D000287 ORTHO05D000319 5.0e-12 75.1 120 44.2
Migut.D02571 Erythranthe guttata HOM05D007392 ORTHO05D009181 1.1e-11 73.9 152 40.1
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 2.5e-11 72.8 140 36.4
C05p54400 Brassica napus HOM05D007392 ORTHO05D009181 1.2e-10 70.5 147 38.8
vmacro23199 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 1.2e-10 70.5 113 44.2
Aa31LG8G680 Aethionema arabicum HOM05D007392 ORTHO05D009181 2.1e-10 69.7 138 32.6
Aa31LG10G780 Aethionema arabicum HOM05D007392 ORTHO05D009181 2.7e-10 69.3 73 52.1
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 6.1e-10 68.2 141 34.8
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 1.0e-09 67.4 140 33.6
Oeu059652.1 Olea europaea HOM05D007392 ORTHO05D009181 1.4e-09 67.0 124 39.5
C03p46430 Brassica napus HOM05D007392 ORTHO05D009181 1.8e-09 66.6 112 42.0
Cpa.g.sc119.37 Carica papaya HOM05D007392 ORTHO05D009181 3.0e-09 65.9 111 38.7
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 4.0e-09 65.5 145 35.2
SGA_v2.0_scaffold6G03313 Striga asiatica HOM05D007392 ORTHO05D009181 5.2e-09 65.1 146 37.7
Migut.N00543 Erythranthe guttata HOM05D007392 ORTHO05D009181 6.7e-09 64.7 140 36.4
AL1G63490 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 8.8e-09 64.3 65 52.3
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 1.2e-08 63.9 138 32.6
Carub.0001s4396 Capsella rubella HOM05D007392 ORTHO05D009181 1.2e-08 63.9 85 47.1
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 1.2e-08 63.9 141 33.3
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 1.2e-08 63.9 142 33.8
AT1G55475 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 2.0e-08 63.2 65 50.8
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 2.0e-08 63.2 141 32.6
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 2.0e-08 63.2 144 33.3
CARHR045140 Cardamine hirsuta HOM05D007392 ORTHO05D009181 2.6e-08 62.8 67 53.7
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 2.6e-08 62.8 143 34.3
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 2.6e-08 62.8 142 33.1
C03p46400 Brassica napus HOM05D007392 ORTHO05D009181 3.3e-08 62.4 144 33.3
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 3.3e-08 62.4 146 32.9
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.3e-08 62.4 142 33.8
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 4.4e-08 62.0 135 32.6
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 4.4e-08 62.0 140 32.9
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 4.4e-08 62.0 146 34.9
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 5.7e-08 61.6 143 34.3
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 7.5e-08 61.2 142 33.1
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 9.7e-08 60.8 142 34.5
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 9.7e-08 60.8 142 32.4
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 9.7e-08 60.8 153 34.0
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 1.3e-07 60.5 143 32.9
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 2.2e-07 59.7 142 31.0
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 2.8e-07 59.3 141 30.5
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.8e-07 59.3 141 33.3
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 2.8e-07 59.3 145 33.1
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 2.8e-07 59.3 141 29.8
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 2.8e-07 59.3 145 34.5
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 2.8e-07 59.3 144 30.6
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 3.7e-07 58.9 152 32.2
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 4.8e-07 58.5 141 31.9
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 8.2e-07 57.8 154 30.5
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 8.2e-07 57.8 144 33.3
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 8.2e-07 57.8 150 31.3
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.1e-06 57.4 141 30.5
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 1.1e-06 57.4 141 30.5
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 1.1e-06 57.4 143 28.7
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 1.4e-06 57.0 143 30.1
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 1.4e-06 57.0 141 28.4
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 1.4e-06 57.0 153 32.0
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 1.4e-06 57.0 154 35.7
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 1.4e-06 57.0 154 35.7
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 1.4e-06 57.0 156 32.7
C03p46410 Brassica napus HOM05D007392 ORTHO05D009181 1.8e-06 56.6 44 59.1
C03p92800 Brassica napus HOM05D007392 ORTHO05D009181 1.8e-06 56.6 92 40.2
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 1.8e-06 56.6 147 30.6
A08p00640 Brassica napus HOM05D007392 ORTHO05D009181 2.4e-06 56.2 87 44.8
BraA08t32122Z Brassica rapa HOM05D007392 ORTHO05D009181 2.4e-06 56.2 87 44.8
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 2.4e-06 56.2 141 31.9
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 3.1e-06 55.8 156 30.8
BcaC01g01528 Brassica carinata HOM05D007392 ORTHO05D009181 3.1e-06 55.8 92 41.3
BolC3t21586H Brassica oleracea HOM05D007392 ORTHO05D009181 3.1e-06 55.8 92 41.3
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 3.1e-06 55.8 153 27.5
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 3.1e-06 55.8 152 29.6
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 3.1e-06 55.8 138 31.9
HPP92_015638 Vanilla planifolia HOM05D007392 ORTHO05D009181 4.1e-06 55.5 153 33.3
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 5.3e-06 55.1 143 30.8
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 7.0e-06 54.7 141 31.2
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 9.1e-06 54.3 138 28.3
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 9.1e-06 54.3 141 29.8


User provided reference genes

Program Settings