Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.3e-85 319.7 160 100.0
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.3e-45 186.8 172 63.4
FAN16G3589 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.3e-21 107.1 53 100.0
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.0e-19 98.2 249 33.7
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 7.9e-19 97.8 254 33.9
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 7.9e-19 97.8 254 33.9
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.7e-18 94.7 249 33.3
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 4.0e-15 85.5 58 77.6
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 1.3e-13 80.5 64 67.2
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.6e-11 72.0 64 64.1
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 7.9e-11 71.2 78 52.6
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 1.0e-10 70.9 59 61.0
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 1.3e-10 70.5 59 62.7
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 1.3e-10 70.5 59 62.7
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.8e-10 70.1 59 59.3
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.8e-10 70.1 59 59.3
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.8e-10 70.1 59 59.3
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 1.8e-10 70.1 80 48.8
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.8e-10 70.1 59 62.7
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.8e-10 70.1 59 62.7
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 1.8e-10 70.1 59 59.3
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 2.3e-10 69.7 58 63.8
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 3.0e-10 69.3 83 49.4
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 3.0e-10 69.3 79 51.9
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 3.0e-10 69.3 59 61.0
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 3.0e-10 69.3 59 57.6
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 3.0e-10 69.3 78 51.3
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 3.0e-10 69.3 79 49.4
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 3.0e-10 69.3 58 62.1
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 3.9e-10 68.9 79 50.6
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 5.1e-10 68.6 82 48.8
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 5.1e-10 68.6 59 59.3
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 6.7e-10 68.2 58 62.1
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 6.7e-10 68.2 59 59.3
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 8.7e-10 67.8 67 52.2
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 1.1e-09 67.4 59 66.1
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 1.5e-09 67.0 73 49.3
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 1.5e-09 67.0 59 62.7
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 1.5e-09 67.0 78 52.6
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 1.5e-09 67.0 59 57.6
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.9e-09 66.6 59 55.9
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 2.5e-09 66.2 79 49.4
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 2.5e-09 66.2 59 57.6
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 2.5e-09 66.2 60 56.7
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 3.3e-09 65.9 59 57.6
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 3.3e-09 65.9 69 50.7
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.3e-09 65.9 56 62.5
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.3e-09 65.9 59 64.4
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 3.3e-09 65.9 59 57.6
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 4.3e-09 65.5 59 57.6
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 4.3e-09 65.5 59 55.9
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 4.3e-09 65.5 59 59.3
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 5.7e-09 65.1 64 50.0
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 5.7e-09 65.1 59 55.9
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 5.7e-09 65.1 59 57.6
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 7.4e-09 64.7 59 57.6
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 7.4e-09 64.7 59 57.6
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 7.4e-09 64.7 59 57.6
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 7.4e-09 64.7 59 57.6
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 7.4e-09 64.7 59 57.6
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 7.4e-09 64.7 74 47.3
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 7.4e-09 64.7 60 60.0
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 9.7e-09 64.3 68 51.5
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 9.7e-09 64.3 79 48.1
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.3e-08 63.9 59 54.2
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 1.6e-08 63.5 69 49.3
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 1.6e-08 63.5 68 51.5
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.6e-08 63.5 59 54.2
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 1.6e-08 63.5 59 54.2
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 2.8e-08 62.8 59 57.6
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 2.8e-08 62.8 59 57.6
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 2.8e-08 62.8 59 57.6
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 2.8e-08 62.8 67 49.3
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 2.8e-08 62.8 61 52.5
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 3.7e-08 62.4 59 54.2
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 3.7e-08 62.4 59 54.2
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 3.7e-08 62.4 59 54.2
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 6.3e-08 61.6 73 49.3
FvH4_3g40670 Fragaria vesca HOM05D005393 ORTHO05D006257 6.3e-08 61.6 47 68.1
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 8.2e-08 61.2 59 54.2
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 8.2e-08 61.2 59 52.5
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 1.1e-07 60.8 82 48.8
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 1.1e-07 60.8 58 56.9
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 1.4e-07 60.5 59 55.9
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 1.4e-07 60.5 59 55.9
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.4e-07 60.5 61 54.1
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 1.4e-07 60.5 58 53.4
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 1.8e-07 60.1 59 54.2
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 1.8e-07 60.1 81 48.1
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 1.8e-07 60.1 81 48.1
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.8e-07 60.1 56 57.1
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 2.4e-07 59.7 59 55.9
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 2.4e-07 59.7 59 52.5
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 3.1e-07 59.3 59 54.2
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 4.1e-07 58.9 112 40.2
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 4.1e-07 58.9 59 50.8
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 4.1e-07 58.9 59 50.8
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 5.3e-07 58.5 59 54.2
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 5.3e-07 58.5 59 54.2
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 6.9e-07 58.2 82 41.5
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 9.0e-07 57.8 71 46.5
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 9.0e-07 57.8 58 50.0
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 2.6e-06 56.2 59 52.5
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 4.5e-06 55.5 59 50.8
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 4.5e-06 55.5 61 49.2
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 4.5e-06 55.5 58 48.3
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 7.7e-06 54.7 58 48.3
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 1.0e-05 54.3 54 55.6
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 1.0e-05 54.3 79 45.6
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 1.0e-05 54.3 79 45.6
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.0e-05 54.3 58 48.3


User provided reference genes

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