Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0742 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.3e-92 343.2 191 100.0
FvH4_3g16870 Fragaria vesca HOM05D003590 ORTHO05D004290 4.3e-88 328.2 219 87.2
FAN11G2382 Fragaria x ananassa HOM05D003590 ORTHO05D004290 4.3e-88 328.2 219 87.2
RcHm_v2.0_Chr5g0028111 Rosa chinensis HOM05D003590 ORTHO05D004290 2.0e-61 239.6 219 68.0
RcHm_v2.0_Chr6g0285711 Rosa chinensis HOM05D003590 ORTHO05D004290 1.4e-54 216.9 225 63.1
FvH4_2g19990 Fragaria vesca HOM05D003590 ORTHO05D004290 2.4e-54 216.1 225 62.7
MD00G1019200 Malus domestica HOM05D003590 ORTHO05D004290 2.4e-54 216.1 224 62.5
Prupe.1G203200 Prunus persica HOM05D003590 ORTHO05D004290 2.4e-54 216.1 225 62.7
Cfa015230 Carpinus fangiana HOM05D003590 ORTHO05D004290 5.3e-54 214.9 224 61.2
RcHm_v2.0_Chr2g0122441 Rosa chinensis HOM05D003590 ORTHO05D004290 5.3e-54 214.9 224 62.1
Gohir.D10G124700 Gossypium hirsutum HOM05D003590 ORTHO05D004290 9.0e-54 214.2 225 61.8
Gorai.011G137800 Gossypium raimondii HOM05D003590 ORTHO05D004290 9.0e-54 214.2 225 61.8
Duzib151G0409 Durio zibethinus HOM05D003590 ORTHO05D004290 2.0e-53 213.0 224 60.7
Gohir.A10G141800 Gossypium hirsutum HOM05D003590 ORTHO05D004290 4.5e-53 211.8 225 61.3
Thecc.04G169500 Theobroma cacao HOM05D003590 ORTHO05D004290 7.6e-53 211.1 225 61.3
CiPaw.01G172800 Carya illinoinensis HOM05D003590 ORTHO05D004290 2.9e-52 209.1 225 60.9
COL.COLO4_10136 Corchorus olitorius HOM05D003590 ORTHO05D004290 6.5e-52 208.0 225 60.9
Duzib268G1650 Durio zibethinus HOM05D003590 ORTHO05D004290 6.5e-52 208.0 225 60.4
GSVIVG01019065001 Vitis vinifera HOM05D003590 ORTHO05D004290 1.4e-51 206.8 223 60.1
Dinv33190 Davidia involucrata HOM05D003590 ORTHO05D004290 3.2e-51 205.7 225 60.4
Dinv15385 Davidia involucrata HOM05D003590 ORTHO05D004290 1.2e-50 203.8 225 59.1
FAN27G0950 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.2e-50 203.8 253 55.3
Lj3g0023284 Lotus japonicus HOM05D003590 ORTHO05D004290 1.6e-50 203.4 224 58.5
TWI36G1101 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 1.6e-50 203.4 224 57.1
Duzib212G0521 Durio zibethinus HOM05D003590 ORTHO05D004290 4.6e-50 201.8 225 59.1
Glyma.12G049400 Glycine max HOM05D003590 ORTHO05D004290 4.6e-50 201.8 224 58.0
Lalb_Chr07g0192831 Lupinus albus HOM05D003590 ORTHO05D004290 7.9e-50 201.1 224 58.9
FAN24G1875 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.0e-49 200.7 265 53.2
TAR362G0082 Trochodendron aralioides HOM05D003590 ORTHO05D004290 1.0e-49 200.7 224 59.4
Glyma.11G124800 Glycine max HOM05D003590 ORTHO05D004290 1.3e-49 200.3 224 57.6
MD17G1177400 Malus domestica HOM05D003590 ORTHO05D004290 1.3e-49 200.3 262 53.8
CiPaw.02G102900 Carya illinoinensis HOM05D003590 ORTHO05D004290 1.8e-49 199.9 225 58.7
Eucgr.K00001 Eucalyptus grandis HOM05D003590 ORTHO05D004290 2.3e-49 199.5 224 57.6
Phvul.008G099200 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 3.9e-49 198.7 224 58.9
VMungo1383G1305 Vigna mungo HOM05D003590 ORTHO05D004290 3.9e-49 198.7 224 58.5
Eucgr.B01427 Eucalyptus grandis HOM05D003590 ORTHO05D004290 5.1e-49 198.4 224 57.1
CANSAT64G0301 Cannabis sativa HOM05D003590 ORTHO05D004290 6.7e-49 198.0 225 58.2
FAN26G3423 Fragaria x ananassa HOM05D003590 ORTHO05D004290 6.7e-49 198.0 237 57.4
Ca_20810_v3 Cicer arietinum L. HOM05D003590 ORTHO05D004290 8.7e-49 197.6 224 57.6
FAN15G3511 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.1e-48 197.2 263 53.6
Dinv29086 Davidia involucrata HOM05D003590 ORTHO05D004290 1.5e-48 196.8 225 57.8
PGR119G1440 Punica granatum HOM05D003590 ORTHO05D004290 1.5e-48 196.8 224 56.7
Atru.chr4.1363 Acer truncatum HOM05D003590 ORTHO05D004290 2.5e-48 196.1 225 57.8
CSS0039108 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 2.5e-48 196.1 225 56.9
ClCG07G015120 Citrullus lanatus HOM05D003590 ORTHO05D004290 2.5e-48 196.1 224 57.1
Ciclev10021047m.g Citrus clementina HOM05D003590 ORTHO05D004290 4.3e-48 195.3 225 57.8
DCAR_002151 Daucus carota HOM05D003590 ORTHO05D004290 4.3e-48 195.3 218 56.4
DCAR_023942 Daucus carota HOM05D003590 ORTHO05D004290 4.3e-48 195.3 225 57.8
MELO3C017774.2 Cucumis melo HOM05D003590 ORTHO05D004290 5.7e-48 194.9 224 56.7
CsaV3_4G002670 Cucumis sativus L. HOM05D003590 ORTHO05D004290 5.7e-48 194.9 224 56.7
Gohir.A02G091600 Gossypium hirsutum HOM05D003590 ORTHO05D004290 5.7e-48 194.9 224 58.0
Lalb_Chr19g0138461 Lupinus albus HOM05D003590 ORTHO05D004290 5.7e-48 194.9 224 57.1
Sed0008844 Sechium edule HOM05D003590 ORTHO05D004290 5.7e-48 194.9 224 56.7
arahy.Tifrunner.gnm1.ann1.SY3MF3 Arachis hypogaea HOM05D003590 ORTHO05D004290 7.4e-48 194.5 225 57.3
arahy.Tifrunner.gnm1.ann1.YL8857 Arachis hypogaea HOM05D003590 ORTHO05D004290 7.4e-48 194.5 225 57.3
Nn7g37627 Nelumbo nucifera HOM05D003590 ORTHO05D004290 7.4e-48 194.5 225 57.3
Sed0014148 Sechium edule HOM05D003590 ORTHO05D004290 9.6e-48 194.1 224 56.2
Eucgr.A00018 Eucalyptus grandis HOM05D003590 ORTHO05D004290 1.3e-47 193.7 224 58.0
Gohir.D02G109000 Gossypium hirsutum HOM05D003590 ORTHO05D004290 1.3e-47 193.7 224 57.6
Gorai.005G124600 Gossypium raimondii HOM05D003590 ORTHO05D004290 1.3e-47 193.7 224 57.6
GSVIVG01038103001 Vitis vinifera HOM05D003590 ORTHO05D004290 2.1e-47 193.0 225 56.9
CDE08G0825 Ceratophyllum demersum HOM05D003590 ORTHO05D004290 3.7e-47 192.2 225 56.4
Lsat_1_v5_gn_9_37260 Lactuca sativa HOM05D003590 ORTHO05D004290 3.7e-47 192.2 211 58.3
vmacro00650 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 3.7e-47 192.2 225 57.3
vmacro00679 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 3.7e-47 192.2 225 57.3
Zm00001eb144840 Zea mays HOM05D003590 ORTHO05D004290 3.7e-47 192.2 225 58.2
MSTRG.8205 Avicennia marina HOM05D003590 ORTHO05D004290 4.8e-47 191.8 224 57.1
Peaxi162Scf00074g01833 Petunia axillaris HOM05D003590 ORTHO05D004290 4.8e-47 191.8 224 57.1
ATR0743G202 Amborella trichopoda HOM05D003590 ORTHO05D004290 6.3e-47 191.4 225 56.9
Lsat_1_v5_gn_8_26121 Lactuca sativa HOM05D003590 ORTHO05D004290 6.3e-47 191.4 226 56.2
Cc09_g03870 Coffea canephora HOM05D003590 ORTHO05D004290 8.2e-47 191.0 226 55.8
MBI07_g22611_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 8.2e-47 191.0 225 56.9
ECA246G2345 Erigeron canadensis HOM05D003590 ORTHO05D004290 1.4e-46 190.3 225 55.1
Nitab4.5_0004390g0060 Nicotiana tabacum HOM05D003590 ORTHO05D004290 1.4e-46 190.3 224 56.2
Actinidia27105 Actinidia chinensis HOM05D003590 ORTHO05D004290 1.8e-46 189.9 225 56.9
MBI17_g21475_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 1.8e-46 189.9 225 56.0
HPP92_009006 Vanilla planifolia HOM05D003590 ORTHO05D004290 1.8e-46 189.9 225 56.4
Aqoxy2G04149 Aquilegia oxysepala HOM05D003590 ORTHO05D004290 2.4e-46 189.5 225 56.0
CAN.G1177.3 Capsicum annuum HOM05D003590 ORTHO05D004290 2.4e-46 189.5 224 55.8
Lj3A152T20 Lonicera japonica HOM05D003590 ORTHO05D004290 2.4e-46 189.5 224 56.7
Nitab4.5_0009796g0040 Nicotiana tabacum HOM05D003590 ORTHO05D004290 4.1e-46 188.7 224 55.4
Os01g0895100 Oryza sativa ssp. japonica HOM05D003590 ORTHO05D004290 5.3e-46 188.3 224 56.2
Medtr4g068210 Medicago truncatula HOM05D003590 ORTHO05D004290 6.9e-46 188.0 224 55.4
Zm00001eb365760 Zea mays HOM05D003590 ORTHO05D004290 6.9e-46 188.0 225 57.3
PGR042G3827 Punica granatum HOM05D003590 ORTHO05D004290 9.0e-46 187.6 224 56.2
PGSC0003DMG400016231 Solanum tuberosum HOM05D003590 ORTHO05D004290 9.0e-46 187.6 224 55.8
Manes.11G128000 Manihot esculenta HOM05D003590 ORTHO05D004290 1.2e-45 187.2 224 54.9
TPR.G34214 Trifolium pratense HOM05D003590 ORTHO05D004290 1.2e-45 187.2 225 56.0
Sc06g0005010 Simmondsia chinensis HOM05D003590 ORTHO05D004290 1.5e-45 186.8 224 55.4
SalBow6G6444 Salvia bowleyana HOM05D003590 ORTHO05D004290 2.6e-45 186.0 224 55.8
HanXRQChr05g0149811 Helianthus annuus HOM05D003590 ORTHO05D004290 3.4e-45 185.7 224 55.4
Potri.006G123600 Populus trichocarpa HOM05D003590 ORTHO05D004290 3.4e-45 185.7 222 56.3
Sp5g19930 Schrenkiella parvula HOM05D003590 ORTHO05D004290 4.5e-45 185.3 223 53.8
Solyc11g008990.2 Solanum lycopersicum HOM05D003590 ORTHO05D004290 5.9e-45 184.9 224 54.9
Sopen11g004770 Solanum pennellii HOM05D003590 ORTHO05D004290 5.9e-45 184.9 224 54.9
AL2G20260 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 1.0e-44 184.1 223 53.8
BcaC03g14688 Brassica carinata HOM05D003590 ORTHO05D004290 1.0e-44 184.1 223 53.4
PSO384G2196 Papaver somniferum HOM05D003590 ORTHO05D004290 1.0e-44 184.1 223 56.1
BcaB05g24099 Brassica carinata HOM05D003590 ORTHO05D004290 1.3e-44 183.7 223 53.4
Haze_01407 Corylus avellana HOM05D003590 ORTHO05D004290 1.3e-44 183.7 285 47.4
THA.LOC104805702 Tarenaya hassleriana HOM05D003590 ORTHO05D004290 1.7e-44 183.3 224 54.9
Actinidia03270 Actinidia chinensis HOM05D003590 ORTHO05D004290 2.2e-44 183.0 221 55.7
Potri.016G099400 Populus trichocarpa HOM05D003590 ORTHO05D004290 2.2e-44 183.0 225 54.7
Oeu064494.2 Olea europaea HOM05D003590 ORTHO05D004290 2.9e-44 182.6 225 54.7
PSO339G4307 Papaver somniferum HOM05D003590 ORTHO05D004290 2.9e-44 182.6 223 55.6
Aa31LG2G2380 Aethionema arabicum HOM05D003590 ORTHO05D004290 3.8e-44 182.2 223 52.9
A02p13120 Brassica napus HOM05D003590 ORTHO05D004290 3.8e-44 182.2 224 52.7
BraA02t06368Z Brassica rapa HOM05D003590 ORTHO05D004290 3.8e-44 182.2 224 52.7
HanXRQChr16g0500391 Helianthus annuus HOM05D003590 ORTHO05D004290 3.8e-44 182.2 224 54.0
C02p21260 Brassica napus HOM05D003590 ORTHO05D004290 5.0e-44 181.8 223 52.9
BolC2t08266H Brassica oleracea HOM05D003590 ORTHO05D004290 5.0e-44 181.8 223 52.9
AT1G65260 Arabidopsis thaliana HOM05D003590 ORTHO05D004290 6.5e-44 181.4 223 52.9
Carub.0006s2551 Capsella rubella HOM05D003590 ORTHO05D004290 6.5e-44 181.4 223 52.9
CARHR056900 Cardamine hirsuta HOM05D003590 ORTHO05D004290 8.5e-44 181.0 223 52.9
CANSAT54G1837 Cannabis sativa HOM05D003590 ORTHO05D004290 3.2e-43 179.1 224 53.6
Thhalv10018833m.g Eutrema salsugineum HOM05D003590 ORTHO05D004290 5.5e-43 178.3 223 51.1
Manes.04G049785 Manihot esculenta HOM05D003590 ORTHO05D004290 7.2e-43 177.9 224 53.6
Phvul.008G052900 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 7.2e-43 177.9 224 52.2
Rhsim09G0012200 Rhododendron simsii HOM05D003590 ORTHO05D004290 7.2e-43 177.9 252 50.8
Glyma.18G243700 Glycine max HOM05D003590 ORTHO05D004290 1.8e-41 173.3 224 51.8
Nn1g09673 Nelumbo nucifera HOM05D003590 ORTHO05D004290 3.0e-41 172.6 225 53.8
Psat7g208480 Pisum sativum HOM05D003590 ORTHO05D004290 3.9e-41 172.2 207 54.6
Lj1g0027383 Lotus japonicus HOM05D003590 ORTHO05D004290 1.1e-40 170.6 224 50.9
SGA_v2.0_scaffold62G21494 Striga asiatica HOM05D004200 ORTHO05D004996 2.8e-39 166.0 237 48.9
AUR62006641 Chenopodium quinoa HOM05D003590 ORTHO05D004290 4.8e-39 165.2 238 49.6
Rhsim05G0167200 Rhododendron simsii HOM05D003590 ORTHO05D004290 8.2e-39 164.5 277 46.2
Cpa.g.sc9.339 Carica papaya HOM05D003590 ORTHO05D004290 1.4e-38 163.7 218 52.8
unitig_52.g17513 Utricularia gibba HOM05D003590 ORTHO05D004290 1.4e-38 163.7 224 48.7
Migut.F01864 Erythranthe guttata HOM05D003590 ORTHO05D004290 1.8e-38 163.3 184 58.2
SEGI_22814 Sequoiadendron giganteum HOM05D003590 ORTHO05D004290 2.4e-38 162.9 224 48.2
Pp3c2_28040 Physcomitrium patens HOM05D003590 ORTHO05D004290 4.1e-38 162.2 226 48.2
EL10Ac4g10000 Beta vulgaris HOM05D003590 ORTHO05D004290 6.9e-38 161.4 251 47.4
Pp3c7_13570 Physcomitrium patens HOM05D003590 ORTHO05D004290 4.5e-37 158.7 227 47.1
AagrBONN_evm.TU.Sc2ySwM_228.379 Anthoceros agrestis HOM05D003590 ORTHO05D004290 5.0e-36 155.2 224 46.9
Mapoly0058s0048 Marchantia polymorpha HOM05D003590 ORTHO05D004290 1.9e-35 153.3 226 47.3
Ah.06g195400 Amaranthus hybridus HOM05D003590 ORTHO05D004290 3.2e-35 152.5 188 54.3
Lj1A579G41 Lonicera japonica HOM05D003590 ORTHO05D004290 3.2e-35 152.5 310 40.0
SGA_v2.0_scaffold122G33190 Striga asiatica HOM05D003590 ORTHO05D004290 3.2e-35 152.5 279 44.8
Sabra06G0097800 Salix brachista HOM05D003590 ORTHO05D004290 5.5e-35 151.8 288 43.1
PSO478G1249 Papaver somniferum HOM05D003590 ORTHO05D004290 1.6e-34 150.2 223 48.9
FvH4_6g53380 Fragaria vesca HOM05D003590 ORTHO05D004290 6.1e-34 148.3 225 48.4
SMO115G0200 Selaginella moellendorffii HOM05D003590 ORTHO05D004290 1.4e-33 147.1 224 46.0
Hund21913 Selenicereus undatus HOM05D003590 ORTHO05D004290 1.4e-33 147.1 213 50.7
QL10p052769 Quercus lobata HOM05D003590 ORTHO05D004290 1.5e-32 143.7 165 55.8
PSO782G1591 Papaver somniferum HOM05D003590 ORTHO05D004290 2.0e-32 143.3 197 50.3
Hund07359 Selenicereus undatus HOM05D003590 ORTHO05D004290 2.0e-32 143.3 201 51.7
TWI36G0235 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 3.7e-31 139.0 135 64.4
Sabra16G0098800 Salix brachista HOM05D003590 ORTHO05D004290 5.3e-30 135.2 288 40.3
CBR_g79424 Chara braunii HOM05D003590 ORTHO05D004290 2.0e-29 133.3 232 43.5
Dinv15392 Davidia involucrata HOM05D003590 ORTHO05D004290 2.0e-29 133.3 136 62.5
Pp3c10_14840 Physcomitrium patens HOM05D003590 ORTHO05D004290 1.4e-27 127.1 198 45.5
vmacro19565 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.4e-27 127.1 164 53.7
Cpa.g.sc123.34 Carica papaya HOM05D003590 ORTHO05D004290 5.5e-27 125.2 193 48.7
SHI32795 Sapria himalayana HOM05D003590 ORTHO05D004290 1.2e-26 124.0 195 48.2
Oeu010166.1 Olea europaea HOM05D003590 ORTHO05D004290 3.0e-25 119.4 139 54.7
CSS0008581 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 3.3e-24 115.9 139 53.2
PRCOL_00001168 Prasinoderma coloniale HOM05D003590 ORTHO05D004290 3.3e-24 115.9 225 41.8
CSS0013807 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 2.4e-22 109.8 139 51.8
Actinidia06797 Actinidia chinensis HOM05D003590 ORTHO05D004290 2.0e-21 106.7 161 50.9
AUR62000295 Chenopodium quinoa HOM05D003590 ORTHO05D004290 3.6e-18 95.9 104 59.6
ECA246G3922 Erigeron canadensis HOM05D003590 ORTHO05D004290 3.6e-18 95.9 197 39.1
Lsat_1_v5_gn_1_99340 Lactuca sativa HOM05D003590 ORTHO05D004290 6.1e-18 95.1 126 50.0
Lj4g0013306 Lotus japonicus HOM05D003590 ORTHO05D004290 1.4e-17 94.0 77 68.8
CBR_g16972 Chara braunii HOM05D003590 ORTHO05D004290 1.7e-15 87.0 203 35.0
CSS0007792 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 4.8e-15 85.5 78 65.4
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 1.8e-14 83.6 145 42.1
QL11p022255 Quercus lobata HOM05D003590 ORTHO05D004290 5.9e-13 78.6 70 65.7
Oeu010165.1 Olea europaea HOM05D003590 ORTHO05D004290 7.7e-13 78.2 78 61.5
MCO10G215 Micromonas commoda HOM05D003590 ORTHO05D004290 5.5e-11 72.0 225 33.3
Hma1.2p1_0831F.1_g225440 Hydrangea macrophylla HOM05D003590 ORTHO05D004290 7.2e-11 71.6 63 63.5
AagrBONN_evm.TU.Sc2ySwM_228.2375 Anthoceros agrestis HOM05D003590 ORTHO05D004290 9.4e-11 71.2 139 38.1
CiPaw.09G006800 Carya illinoinensis HOM05D003590 ORTHO05D004290 1.2e-10 70.9 65 69.2
vmacro19566 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.6e-10 70.5 68 60.3
GSVIVG01036624001 Vitis vinifera HOM05D003590 ORTHO05D004290 2.7e-10 69.7 63 66.7
MD15G1434500 Malus domestica HOM05D003590 ORTHO05D004290 6.1e-10 68.6 58 65.5
Cre11.g468050 Chlamydomonas reinhardtii HOM05D003590 ORTHO05D004290 8.0e-10 68.2 150 36.0
FAN19G0667 Fragaria x ananassa HOM05D003590 ORTHO05D004290 4.4e-08 62.4 63 58.7
Cre13.g583550 Chlamydomonas reinhardtii HOM05D003590 ORTHO05D004290 4.8e-07 58.9 228 29.4


User provided reference genes

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